A taxonomic and phylogenetic revision of the Penicillium sclerotiorum complex

Studies in Mycology

Volumn 70, Issue , 2011, Pages 139-158

  Rivera, K G ^a   Seifertkeith, K A ^a  

^a OTTAWA RESEARCH AND DEVELOPMENT CENTRE   (Canada)

Author keywords

DNA barcoding; Multigene phylogeny; Sclerotia; Soil borne hyphomycetes

Indexed keywords

EID: 84255209241     PISSN: 01660616     EISSN: None     Source Type: Journal    
DOI: 10.3114/sim.2011.70.03     Document Type: Article

References (42)

1. Beyma JFH van (1937). Penicillium sclerotiorum nov. spec. Centrablatt für Bakteriologie, Parastenkunde und Infektionskrankheiten Abt. II, 96: 481-491.
2. 5Cl, a chlorine-containing metabolic product of Penicillium sclerotiorum van Beyma. Biochemical Journal 34: 1418- 1421.
3. De Lucca AJ, Klich M, Boue S, Cleveland TE, Sien T, Walsh TJ (2008). Fungicidal activity of plant saponin CAY-1 for fungi isolated from diseased Vitus fruit and stems. American Journal of Enology and Viticuluture 59: 67-72.
4. Filtenborg O, Frisvad JC, Trane U (1990). The significance of yeast extract composition of metabolite production in Penicillium. In: Modern concepts in Penicillium and Aspergillus classification. (Samson RA, Pitt JI, eds). Plenum Press, New York: 433-441.
5. Frisvad JC (1993). Modifications on media based on creatine for use in Penicillium and Aspergillus taxonomy. Letters in Applied Microbiology 16: 154-157.
6. Frisvad JC, Samson RA (2004). Polyphasic taxonomy of Penicillium subgenus Penicillium. A guide to identification of the food and air-borne terverticillate Penicillia and their mycotoxins. Studies in Mycology 49: 1-174.
7. Gascuel O (1997). BIONJ: An improved version of the NJ algorithm based on a simple model of sequence data. Molecular Biology and Evolution 14: 685-695.
8. Glass NL, Donaldson GC (1995) Development of primer sets deigned for use with the PCR to amplify conserved genes from filamentous ascomycetes. Applied and Environmental Microbiology 61: 1323-1330.
9. Guindon S, Lethiec F, Duroux P, Gascuel O (2005). PhyML online: A web server for fast maximum likelihood-based phylogenetic inference. Nucleic Acids Research 33 (Web Server issue): W557-559.
10. Hall TA (1999). BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95-98.
11. Hebert PDN, Cywinska A, Ball SL, de Waard JR (2003). Biological identifications through DNA barcodes. Proceedings of the Royal Society of London Series B-Biological Sciences 270: 313-321.
12. Hong SB, Cho HS, Shin HD, Frisvad JC, Samson RA (2006). Novel Neosartorya species isolated from soil in Korea. International Journal of Systematics and Evolutionary Microbiology 2: 477-486.
13. Houbraken J, Samson RA (2011). Phylogeny of Penicillium and the segregation of Trichocomaceae into three families. Studies in Mycology 70: 1-51.
14. Huelsenbeck JP, Ronquist F (2001). MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
15. Iwatsuki M, Takada S, Ishiyama A, Namatame M, Tukashima-Nishihara A, Nonaka K, Masuma R, Mori M, Shiomi K, Otoguro K, Omura S (2010). In vitro and in vivo antimalarial activities of puberulic acid and its new analogs, viticolins A-C, produced by Penicillium sp. FKI-4410. Journal of Antibiotics (Tokyo) 64: 183-188.
16. Katoh K, Asimenos G, Toh H (2009). Multiple alignment of DNA sequences with MAFFT. Methods in Molecular Biology 537: 39-64.
17. rd ed. Denmark, Sankt Jørgen Tryk.
18. McAlpin CE (2004). Synnema and sclerotium production in Aspergillus caelatus and the influence of substrate composition on their development in selected strains. Mycologia 5: 937-947.
19. Nonaka K, Masuma R, Iwatsuki M, Shiomi K, Otoguro K (2011). Penicillium viticola, a new species isolated from a grape in Japan. Mycoscience 52: 338-343.
20. Pairet L, Wrigley SK, Chetland I, Reynolds EE, Hayes MA, Holloway J, Ainsworth AM, Katzer W, Cheng XM, Hupe DJ, Charleton PDAM (1995). Azapilones with endothelin receptor binding activity produced by Penicillium sclerotiorum: Taxonomy, isolation, structure elucidation and biological activity. The Journal of Antibiotics 48: 913-929.
21. Peterson SW (2000). Phylogenetic analyses of Penicillium species based on ITS and LSU-rDNA nucleotide sequences. In: Integration of modern taxonomic methods for Penicillium and Aspergillus. (Samson RA, Pitt JI, eds). Hardwood Academic Publishers, Amsterdam: 163-178.
22. Peterson SW, Bayer EM, Wicklow DT (2004). Penicillium thiersii, Penicillium angulare and Penicillium decaturense, new species isolated from wood-decay fungi in North America and their phylogenetic placement from multilocus DNA sequence analysis. Mycologia 96: 1280-1293.
23. Pitt JI (1973). An appraisal of identification methods for Penicillium species: Novel taxonomic criteria based on temperature and water relations. Mycologia 65: 1135-1157.
24. Pitt JI (1980). The Genus Penicillium and its Teleomorphic States Eupenicillium and Talaromyces. Academic Press, London, UK.
25. Posada D, Crandall KA (1998). Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817-818.
26. Ramírez C (1982). Manual and atlas of the Penicillia. Elsevier Biomedical Press, Amsterdam.
27. Raper KB, Thom C (1949). A Manual of the Penicillia. Williams & Wilkins Co., Baltimore.
28. Rivera KG, Díaz J, Chavarría-Díaz F, Garcia M, Urb M, Thorn RG, Louis-Seize G, Janzen DH, Seifert KA (2011). Penicillium mallochii and P. guanacastense, two new species isolated from Costa Rican caterpillars. Mycotaxon (in press).
29. Ronquist F, Huelsenbeck JP (2003). MrBayes v. 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
30. Rudolph ED (1962). The effect of some physiological and environmental factors on sclerotial Aspergilli. American Journal of Botany 49: 71-78.
31. Samson RA, Seifert KA, Kuijpers AFA, Houbraken JAMP, Frisvad JC (2004). Phylogenetic analysis of Penicillium subgenus Penicillium using partial betatubulin sequences. Studies in Mycology 48: 175-200.
32. Sawane AM, Saoji AA (2004). A report on Penicillium in the intramural and extramural air of residential areas of Nagpur city (India). Aerobiologia 20: 229-236.
33. Scott JB, Chkraborty S (2006). Multilocus sequence analyses of Fusarium pseudograminearum reveals a single phylogenetic species. Mycological Research 110: 1413-1425.
34. Seifert KA, Samson RA, deWaard J, Houbraken J, Levesque CA, Moncalvo JM, Louis-Seize G, Hebert PDN (2007). Prospects for fungus identification using CO1 DNA barcodes. Proceedings of the National Academy of Science 104: 3901-3906.
35. Stolk AC, Samson RA (1983). The Ascomycete genus Eupenicillium and related Penicillium anamorphs. Studies in Mycology 23: 1-149.
36. Swofford DL (2003). Phylogenetic Analysis Using Parsimony (*and Other Methods). v. 4, Sinauer Associates, Sunderland, Massachusetts.
37. Taylor JW, Jacobson D, Kroken S, Kasuga T, Geiser DM, Hibbitt DS, Fisher MC (2000). Phylogenetic species recognition and species concepts in fungi. Fungal Genetics and Biology 31: 21-32.
38. Vega FE, Posada F, Peterson SW, Gianfagna TJ, Chavez F (2006). Penicillium species endophytic in coffee plants and ochratoxin A production. Mycologia 98: 31-42.
39. Vesper SJ, Wymer LJ, Meklin T, Varma M, Stott R, Richardson M, Haugland RA (2005). Comparison of populations of mould species in homes in the UK and USA using mould-specific quantitative PCR. Letters in Applied Microbiology 41: 367-373.
40. Wheeler BEJ, Sharon N (1965). The production of sclerotia by Sclerotium rolfsii. Transactions of the British Mycological Society 48: 291-301.
41. White TJ, Bruns T, Lee S, Taylor JW (1990). Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: PCR protocols: A Guide to Methods and Applications. (Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds). Academic Press, London, UK: 315-322.
42. Wyllie TD, DeVay JE (1970). Growth characteristics of several isolates of Verticillium albo-atrum and Verticillium nigrescens from cotton. Phytopathology 60: 907- 910.