메뉴 건너뛰기




Volumn 412, Issue , 2012, Pages 52-57

Development of a real-time PCR assay for the detection of the invasive clam, Corbula amurensis, in environmental samples

Author keywords

Environmental sampling; Invasive species; Larvae; Molecular detection; Surveillance

Indexed keywords

BENTHOS; BIOASSAY; BIOFILM; BIVALVE; DETECTION METHOD; GENETIC ANALYSIS; INVASIVE SPECIES; LARVA; MACROALGA; MOLECULAR ANALYSIS; PLANKTON; POLYMERASE CHAIN REACTION; POPULATION DENSITY; POPULATION REGULATION; PROBABILITY; SEAWATER;

EID: 84155165091     PISSN: 00220981     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jembe.2011.10.021     Document Type: Article
Times cited : (22)

References (27)
  • 2
    • 0027100509 scopus 로고
    • Trophic interactions and direct physical effects control phytoplankton biomass and production in an estuary
    • Alpine A.E., Cloern J.E. Trophic interactions and direct physical effects control phytoplankton biomass and production in an estuary. Limnol. Oceanogr. 1992, 37:946-955.
    • (1992) Limnol. Oceanogr. , vol.37 , pp. 946-955
    • Alpine, A.E.1    Cloern, J.E.2
  • 4
    • 0002434774 scopus 로고
    • Remarkable invasion of San Francisco Bay (California, USA) by the Asian clam Potamocorbula amurensis. I. Introduction and dispersal
    • Carlton J.T., Thompson J.K., Schemel L.E., Nichols F.H. Remarkable invasion of San Francisco Bay (California, USA) by the Asian clam Potamocorbula amurensis. I. Introduction and dispersal. Mar. Ecol. Prog. Ser. 1990, 66:81-94.
    • (1990) Mar. Ecol. Prog. Ser. , vol.66 , pp. 81-94
    • Carlton, J.T.1    Thompson, J.K.2    Schemel, L.E.3    Nichols, F.H.4
  • 5
    • 0036101968 scopus 로고    scopus 로고
    • The eastern Pacific recent species of the Corbulidae (Bivalvia)
    • Coan E.V. The eastern Pacific recent species of the Corbulidae (Bivalvia). Malacologia 2002, 44:47-105.
    • (2002) Malacologia , vol.44 , pp. 47-105
    • Coan, E.V.1
  • 6
    • 33644865858 scopus 로고    scopus 로고
    • Improved quantitative real-time PCR assays for enumeration of harmful algal species in field samples using an exogenous DNA reference standard
    • Coyne K.J., Handy S.M., Demir E., Whereat E.B., Hutchins D.A., Portune K.J., Doblin M.A., Cary S.C. Improved quantitative real-time PCR assays for enumeration of harmful algal species in field samples using an exogenous DNA reference standard. Limnol. Oceanogr. Meth. 2005, 3:381-391.
    • (2005) Limnol. Oceanogr. Meth. , vol.3 , pp. 381-391
    • Coyne, K.J.1    Handy, S.M.2    Demir, E.3    Whereat, E.B.4    Hutchins, D.A.5    Portune, K.J.6    Doblin, M.A.7    Cary, S.C.8
  • 7
    • 34548681208 scopus 로고    scopus 로고
    • DNA-based methods for monitoring invasive species: a review and prospectus
    • Darling J.A., Blum M.J. DNA-based methods for monitoring invasive species: a review and prospectus. Biol. Invasions 2007, 9:751-765.
    • (2007) Biol. Invasions , vol.9 , pp. 751-765
    • Darling, J.A.1    Blum, M.J.2
  • 8
    • 0344304437 scopus 로고    scopus 로고
    • Development and evaluation of a PCR-based test for detection of Asterias (Echinodermata: Asteroidea) larvae in Australian plankton samples from ballast water
    • Deagle B.E., Bax N., Hewitt C.L., Patil J.G. Development and evaluation of a PCR-based test for detection of Asterias (Echinodermata: Asteroidea) larvae in Australian plankton samples from ballast water. Mar. Freshw. Res. 2003, 54:709-719.
    • (2003) Mar. Freshw. Res. , vol.54 , pp. 709-719
    • Deagle, B.E.1    Bax, N.2    Hewitt, C.L.3    Patil, J.G.4
  • 9
    • 0028112638 scopus 로고
    • Genetic population structure of the recently introduced Asian clam, Potamocorbula amurensis, in San Francisco Bay
    • Duda T.F. Genetic population structure of the recently introduced Asian clam, Potamocorbula amurensis, in San Francisco Bay. Mar. Biol. 1994, 119:235-241.
    • (1994) Mar. Biol. , vol.119 , pp. 235-241
    • Duda, T.F.1
  • 10
    • 0037059641 scopus 로고    scopus 로고
    • Techniques for the identification of bivalve larvae
    • Garland E.D., Zimmer C.A. Techniques for the identification of bivalve larvae. Mar. Ecol. Prog. Ser. 2002, 225:299-310.
    • (2002) Mar. Ecol. Prog. Ser. , vol.225 , pp. 299-310
    • Garland, E.D.1    Zimmer, C.A.2
  • 11
    • 0028066397 scopus 로고
    • PCR based detection of mtDNA haplotypes of native and invading mussels on the Northeastern Pacific Coast - latitudinal pattern of invasion
    • Geller J.B., Carlton J.T., Powers D.A. PCR based detection of mtDNA haplotypes of native and invading mussels on the Northeastern Pacific Coast - latitudinal pattern of invasion. Mar. Biol. 1994, 119:243-249.
    • (1994) Mar. Biol. , vol.119 , pp. 243-249
    • Geller, J.B.1    Carlton, J.T.2    Powers, D.A.3
  • 12
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids Symp. Ser. 1999, 41:95-98.
    • (1999) Nucl. Acids Symp. Ser. , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 13
    • 58749111972 scopus 로고    scopus 로고
    • Molecular detection of native and invasive marine invertebrate larvae present in ballast and open water environmental samples collected in Puget Sound
    • Harvey J.B.J., Hoy M.S., Rodriguez R.J. Molecular detection of native and invasive marine invertebrate larvae present in ballast and open water environmental samples collected in Puget Sound. J. Exp. Mar. Biol. Ecol. 2009, 369:93-99.
    • (2009) J. Exp. Mar. Biol. Ecol. , vol.369 , pp. 93-99
    • Harvey, J.B.J.1    Hoy, M.S.2    Rodriguez, R.J.3
  • 14
    • 13544256490 scopus 로고    scopus 로고
    • Comparison of Enterococcus measurements in freshwater at two recreational beaches by quantitative polymerase chain reaction and membrane filter culture analysis
    • Haugland R.A., Siefring S.C., Wymer L.J., Brenner K.P., Dufour A.P. Comparison of Enterococcus measurements in freshwater at two recreational beaches by quantitative polymerase chain reaction and membrane filter culture analysis. Water Res. 2005, 39:559-568.
    • (2005) Water Res. , vol.39 , pp. 559-568
    • Haugland, R.A.1    Siefring, S.C.2    Wymer, L.J.3    Brenner, K.P.4    Dufour, A.P.5
  • 15
    • 23944499854 scopus 로고    scopus 로고
    • Sensitivity and cost considerations for the detection and eradication of marine pests in ports
    • Hayes K.R., Cannon R., Neil K., Inglis G. Sensitivity and cost considerations for the detection and eradication of marine pests in ports. Mar. Pollut. Bull. 2005, 50:823-834.
    • (2005) Mar. Pollut. Bull. , vol.50 , pp. 823-834
    • Hayes, K.R.1    Cannon, R.2    Neil, K.3    Inglis, G.4
  • 19
    • 0024241467 scopus 로고
    • The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions
    • Medlin L.K., Elwood H.J., Stickel S., Sogin M.L. The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions. Gene 1988, 71:491-499.
    • (1988) Gene , vol.71 , pp. 491-499
    • Medlin, L.K.1    Elwood, H.J.2    Stickel, S.3    Sogin, M.L.4
  • 20
    • 35848945054 scopus 로고    scopus 로고
    • Fluorescent in situ hybridisation assay as a species specific identifier of the northern Pacific seastar, Asterias amurensis
    • Mountfort D.O., Rhodes L., Broom J., Gladstone M., Tyrrell J. Fluorescent in situ hybridisation assay as a species specific identifier of the northern Pacific seastar, Asterias amurensis. N. Z. J. Mar. Freshw. Res. 2007, 41:283-290.
    • (2007) N. Z. J. Mar. Freshw. Res. , vol.41 , pp. 283-290
    • Mountfort, D.O.1    Rhodes, L.2    Broom, J.3    Gladstone, M.4    Tyrrell, J.5
  • 21
    • 0034487576 scopus 로고    scopus 로고
    • Spawning, fertilization, and larval development of Potamocorbula amurensis (Mollusca: Bivalvia) from San Francisco Bay, California
    • Nicolini M.H., Penry D.L. Spawning, fertilization, and larval development of Potamocorbula amurensis (Mollusca: Bivalvia) from San Francisco Bay, California. Pac. Sci. 2000, 54:377-388.
    • (2000) Pac. Sci. , vol.54 , pp. 377-388
    • Nicolini, M.H.1    Penry, D.L.2
  • 22
    • 34247605605 scopus 로고    scopus 로고
    • Development of a real-time PCR probe for quantification of the heterotrophic dinoflagellate Cryptoperidiniopsis brodyi (Dinophyceae) in environmental samples
    • Park T.-G., de Salas M.F., Bolch C.J.S., Hallegraeff G.M. Development of a real-time PCR probe for quantification of the heterotrophic dinoflagellate Cryptoperidiniopsis brodyi (Dinophyceae) in environmental samples. Appl. Environ. Microbiol. 2007, 73:2552-2560.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 2552-2560
    • Park, T.-G.1    de Salas, M.F.2    Bolch, C.J.S.3    Hallegraeff, G.M.4
  • 23
    • 0037106205 scopus 로고    scopus 로고
    • Ecological and paleoecological implications of the rapid increase and decrease of an introduced bivalve Potamocorbula sp. after the construction of a reclamation dike in Isahaya Bay, western Kyushu, Japan
    • Sato S., Azuma M. Ecological and paleoecological implications of the rapid increase and decrease of an introduced bivalve Potamocorbula sp. after the construction of a reclamation dike in Isahaya Bay, western Kyushu, Japan. Palaeogeogr. Palaeoclimatol. Palaeoecol. 2002, 185:369-378.
    • (2002) Palaeogeogr. Palaeoclimatol. Palaeoecol. , vol.185 , pp. 369-378
    • Sato, S.1    Azuma, M.2
  • 24
    • 0035358860 scopus 로고    scopus 로고
    • Eradication of island invasives: practical actions and results achieved
    • Simberloff D. Eradication of island invasives: practical actions and results achieved. Trends Ecol. Evol. 2001, 16:273-274.
    • (2001) Trends Ecol. Evol. , vol.16 , pp. 273-274
    • Simberloff, D.1
  • 25
    • 84155168269 scopus 로고    scopus 로고
    • Sandwich hybridization assay, targeting the ribosomal RNA internal transcribed spacer region, for rapid on site detection of the northern Pacific seastar, Asterias amurensis
    • Smith K., Rhodes L.L., Adamson J.E., Tyrrell J.V., Mountfort D.O., Jones W.J. Sandwich hybridization assay, targeting the ribosomal RNA internal transcribed spacer region, for rapid on site detection of the northern Pacific seastar, Asterias amurensis. N. Z. J. Mar. Freshw. Res. 2011, 45:103-111.
    • (2011) N. Z. J. Mar. Freshw. Res. , vol.45 , pp. 103-111
    • Smith, K.1    Rhodes, L.L.2    Adamson, J.E.3    Tyrrell, J.V.4    Mountfort, D.O.5    Jones, W.J.6
  • 26
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22:4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 27
    • 0030748867 scopus 로고    scopus 로고
    • Inhibition and facilitation of nucleic acid amplification
    • Wilson I.G. Inhibition and facilitation of nucleic acid amplification. Appl. Environ. Microbiol. 1997, 63:3741-3751.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 3741-3751
    • Wilson, I.G.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.