메뉴 건너뛰기




Volumn , Issue , 2011, Pages 5559-5562

Nearest hyperplane distance neighbor clustering algorithm applied to gene co-expression analysis in Alzheimer's disease

Author keywords

[No Author keywords available]

Indexed keywords

ALZHEIMER'S DISEASE; BIOMEDICAL LITERATURE; CELLULAR MECHANISMS; CO-EXPRESSION; DNA MICROARRAY DATA; GENE EXPRESSION DATA; HIGH DIMENSIONAL DATA; K-LOCAL HYPERPLANE; MICROARRAY ANALYSIS; NEAREST NEIGHBOR CLASSIFIERS; NEAREST NEIGHBOR-CLUSTERING ALGORITHM; NOVEL INFORMATION; TISSUE SAMPLES; UNSUPERVISED CLUSTERING ALGORITHM;

EID: 84055192840     PISSN: 1557170X     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/IEMBS.2011.6091344     Document Type: Conference Paper
Times cited : (9)

References (28)
  • 1
    • 33847203593 scopus 로고    scopus 로고
    • Micro-RNA speciation in fetal, adult and Alzheimer's disease hippocampus
    • W. J. Lukiw, "Micro-RNA speciation in fetal, adult and Alzheimer's disease hippocampus," Neuroreport, vol. 18, no.3, pp. 297-300,2007.
    • (2007) Neuroreport , vol.18 , Issue.3 , pp. 297-300
    • Lukiw, W.J.1
  • 2
    • 0031826073 scopus 로고    scopus 로고
    • Strong nuclear factor-kB-DNA binding parallels cyclooxygenase-2 gene transcription in aging and in sporadic Alzheimer's disease superior temporal lobe neocortex
    • W. J. Lukiw and N. G. Bazan, "Strong nuclear factor-kB-DNA binding parallels cyclooxygenase-2 gene transcription in aging and in sporadic Alzheimer's disease superior temporal lobe neocortex," Journal of Neuroscience Research, vol. 53, no. 5, pp. 583-592, 1998.
    • (1998) Journal of Neuroscience Research , vol.53 , Issue.5 , pp. 583-592
    • Lukiw, W.J.1    Bazan, N.G.2
  • 3
    • 70350035701 scopus 로고    scopus 로고
    • Characterization of an NF-kappaB-regulated, miRNA-146a-mediated down-regulation pf complement factor H (CFH) in metal-sulfate-stressed human brain cells
    • A. I. Pogue, et al., "Characterization of an NF-kappaB-regulated, miRNA-146a-mediated down-regulation pf complement factor H (CFH) in metal-sulfate-stressed human brain cells," Journal of inorganic biochemistry, vol. 103, no. 11, pp. 1591-1695, 2009.
    • (2009) Journal of Inorganic Biochemistry , vol.103 , Issue.11 , pp. 1591-1695
    • Pogue, A.I.1
  • 4
    • 57649119790 scopus 로고    scopus 로고
    • An NF-?B-sensitive micro RNA-146a-mediated inflammatory circuit in Alzheimer Disease and in stressed human brain cells
    • W. J. Lukiw, Y. Zhao and J.G.Cui, "An NF-?B-sensitive micro RNA-146a-mediated inflammatory circuit in Alzheimer Disease and in stressed human brain cells," Journal of Biological Chemistry, vol. 283,no. 46, pp. 31315-31322, 2008.
    • (2008) Journal of Biological Chemistry , vol.283 , Issue.46 , pp. 31315-31322
    • Lukiw, W.J.1    Zhao, Y.2    Cui, J.G.3
  • 5
    • 78649863208 scopus 로고    scopus 로고
    • Differential regulation of interleukin-1 receptorassociated kinase-1 (IRAK-1) and IRAK-2 by microRNA-146a and NF-kappaB in stressed human astroglial cells and in Alzheimer's disease
    • J.G.Cui, et al.,"Differential regulation of interleukin-1 receptorassociated kinase-1 (IRAK-1) and IRAK-2 by microRNA-146a and NF-kappaB in stressed human astroglial cells and in Alzheimer's disease," Journal of biological chemestry, vol. 285, no. 50, pp. 38951-38960, 2010.
    • (2010) Journal of Biological Chemestry , vol.285 , Issue.50 , pp. 38951-38960
    • Cui, J.G.1
  • 7
    • 84898980366 scopus 로고    scopus 로고
    • K-local hyperplane and convex distance nearest neighbor algorithms
    • P. Vincent and Y. Bengio, "K-local hyperplane and convex distance nearest neighbor algorithms," in Advances in Neural Information Processing Systems, vol. 14, 2002, pp. 995-992,.
    • (2002) Advances in Neural Information Processing Systems , vol.14 , pp. 995-992
    • Vincent, P.1    Bengio, Y.2
  • 8
    • 33646871614 scopus 로고    scopus 로고
    • An ensemble of K-local hyperplanes for predicting protein-protein interactions
    • L. Nanni and A. Lumini, "An ensemble of K-local hyperplanes for predicting protein-protein interactions," Bioinformatics, vol. 22, no. 10, pp. 1207-1210, 2006.
    • (2006) Bioinformatics , vol.22 , Issue.10 , pp. 1207-1210
    • Nanni, L.1    Lumini, A.2
  • 9
    • 33646405841 scopus 로고    scopus 로고
    • K-local hyperplane distance nearest-neighbor algorithm and protein fold recognition
    • O. Okun, "K-local hyperplane distance nearest-neighbor algorithm and protein fold recognition," Pattern recognition and image analysis, vol. 16, no. 1, pp. 19-22, 2006.
    • (2006) Pattern Recognition and Image Analysis , vol.16 , Issue.1 , pp. 19-22
    • Okun, O.1
  • 12
    • 1242341923 scopus 로고    scopus 로고
    • Incipient Alzheimer's disease: Microarray correlation analyses reveal major transcriptional and tumor suppressor responses
    • E. M. Blalock, et al., "Incipient Alzheimer's disease: Microarray correlation analyses reveal major transcriptional and tumor suppressor responses," Proc. of the National Academy of Sciences of U S A, vol. 101, no 7, pp. 2173-2178, 2004.
    • (2004) Proc. of the National Academy of Sciences of U S A , vol.101 , Issue.7 , pp. 2173-2178
    • Blalock, E.M.1
  • 13
    • 0036081355 scopus 로고    scopus 로고
    • Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
    • R. Edgar, M. Domrachev and A. E. Lash, "Gene Expression Omnibus: NCBI gene expression and hybridization array data repository," Nucleic Acids Research, vol. 30, no. 1, pp. 207-210, 2002.
    • (2002) Nucleic Acids Research , vol.30 , Issue.1 , pp. 207-210
    • Edgar, R.1    Domrachev, M.2    Lash, A.E.3
  • 14
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID Bioinformatics Resources
    • D. W. Huang, B. T. Sherman and R. A. Lempicki, "Systematic and integrative analysis of large gene lists using DAVID Bioinformatics Resources," Nature Protocols, vol. 4, no.1, pp. 44-57, 2009.
    • (2009) Nature Protocols , vol.4 , Issue.1 , pp. 44-57
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 15
    • 58549112996 scopus 로고    scopus 로고
    • Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists
    • D. W. Huang, B. T. Sherman and R. A. Lempicki, "Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists," Nucleic Acids Research, vol. 37,no. 1, pp. 1-13, 2009.
    • (2009) Nucleic Acids Research , vol.37 , Issue.1 , pp. 1-13
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 16
    • 13444272087 scopus 로고    scopus 로고
    • Entrez Gene: Gene-centered information at NCBI
    • database issue
    • D. Maglott, et al., "Entrez Gene: gene-centered information at NCBI," Nucleic Acids Research, vol. 33,database issue, pp. D54-D58, 2005.
    • (2005) Nucleic Acids Research , vol.33
    • Maglott, D.1
  • 17
    • 33748486517 scopus 로고    scopus 로고
    • AceView: A comprehensive cDNA-supported gene and transcripts annotation
    • D. Thierry-Mieg and J. Thierry-Mieg., "AceView: a comprehensive cDNA-supported gene and transcripts annotation," Genome Biology, vol. 7, no. 1, pp. S12.1-S12.14,2006.
    • (2006) Genome Biology , vol.7 , Issue.1
    • Thierry-Mieg, D.1    Thierry-Mieg, J.2
  • 18
    • 33847687662 scopus 로고    scopus 로고
    • Respiratory complex I: Mechanistic and structural insights provided by the crystal structure of the hydrophilic domain
    • L. Sazanov, "Respiratory complex I: mechanistic and structural insights provided by the crystal structure of the hydrophilic domain," Biochemestry, vol. 46, no. 9, pp. 2275-2288,2007.
    • (2007) Biochemestry , vol.46 , Issue.9 , pp. 2275-2288
    • Sazanov, L.1
  • 20
    • 33750347347 scopus 로고    scopus 로고
    • Mitochondrial dysfunction and oxidative stress in neurodegenerative diseases
    • M. Lin and F., Beal, "Mitochondrial dysfunction and oxidative stress in neurodegenerative diseases," Nature, vol. 443, pp. 787-795, 2006.
    • (2006) Nature , vol.443 , pp. 787-795
    • Lin, M.1    Beal, F.2
  • 21
    • 79959265543 scopus 로고    scopus 로고
    • Bioinformatics identification of modules of transcription factor binding sites in Alzheimer's disease related genes by in silico promoter analysis and microarrays
    • to be published
    • R. Augustin, et al., "Bioinformatics identification of modules of transcription factor binding sites in Alzheimer's disease related genes by in silico promoter analysis and microarrays," International journal of Alzheimer's disease, to be published.
    • International Journal of Alzheimer's Disease
    • Augustin, R.1
  • 22
    • 70549084415 scopus 로고    scopus 로고
    • Genome-wide association study identifies common variants at four loci as genetic risk factors for Parkinson?s disease
    • W. Satake, et al., "Genome-wide association study identifies common variants at four loci as genetic risk factors for Parkinson?s disease," Nature genetics, vol. 41, no 12, pp. 1303-1308, 2009.
    • (2009) Nature Genetics , vol.41 , Issue.12 , pp. 1303-1308
    • Satake, W.1
  • 23
    • 0037387048 scopus 로고    scopus 로고
    • Parkinsonianlike signs and risk of incident alzheimer disease in older persons
    • R. Wilson, et al., "Parkinsonianlike Signs and Risk of Incident Alzheimer Disease in Older Persons," Archives of neurology, vol. 60, no. 4,pp. 539-544, 2003.
    • (2003) Archives of Neurology , vol.60 , Issue.4 , pp. 539-544
    • Wilson, R.1
  • 24
    • 34548477722 scopus 로고    scopus 로고
    • Identification and characterization of two putative nuclear localization signals (NLS) in the DNA-binding protein NUCKS
    • K. Grundt, et al., "Identification and characterization of two putative nuclear localization signals (NLS) in the DNA-binding protein NUCKS," International Journal of Biochemistry, Biophysics and Molecular Biology, vol. 1773, no. 9, pp. 1398-13406, 2007.
    • (2007) International Journal of Biochemistry, Biophysics and Molecular Biology , vol.1773 , Issue.9 , pp. 1398-13406
    • Grundt, K.1
  • 25
    • 0037214281 scopus 로고    scopus 로고
    • Novel transcriptional potentiation of BETA2/neurod on the secretin gene promoter by the DNA-binding protein finb/RREB-1
    • S. Ray, et al., "Novel Transcriptional Potentiation of BETA2/NeuroD on the Secretin Gene Promoter by the DNA-Binding Protein Finb/RREB-1," Molecular and cellular biology, vol. 23, no 1, pp. 259-271, 2003.
    • (2003) Molecular and Cellular Biology , vol.23 , Issue.1 , pp. 259-271
    • Ray, S.1
  • 26
    • 0024445028 scopus 로고
    • Adrenergic receptors in aging and Alzheimer's disease: Increased beta 2-receptors in prefrontal cortex and hippocampus
    • R. N. Kalaria, et al., "Adrenergic receptors in aging and Alzheimer's disease: increased beta 2-receptors in prefrontal cortex and hippocampus," Journal of Neurochemistry, vol. 53, no 6, pp. 1772-1781, 1989.
    • (1989) Journal of Neurochemistry , vol.53 , Issue.6 , pp. 1772-1781
    • Kalaria, R.N.1
  • 27
    • 23944507076 scopus 로고    scopus 로고
    • Isolation of high spectral quality RNA using run-on gene transcription; Application to gene expression profiling of human brain
    • J. G. Cui, et al., "Isolation of high spectral quality RNA using run-on gene transcription; application to gene expression profiling of human brain," Cellular and molecular neurobiology, vol. 25, no. 3-4, pp. 789-794, 2005.
    • (2005) Cellular and Molecular Neurobiology , vol.25 , Issue.3-4 , pp. 789-794
    • Cui, J.G.1
  • 28
    • 65749093295 scopus 로고    scopus 로고
    • Micro-RNA abundance and stability in human brain: Specific alterations in Alzheimer's disease temporal lobe neocortex
    • P. Sethi and W. J.Lukiw, "Micro-RNA abundance and stability in human brain: specific alterations in Alzheimer's disease temporal lobe neocortex," Neuroscience letters,vol. 459, no 2, pp. 100-104, 2009.
    • (2009) Neuroscience Letters , vol.459 , Issue.2 , pp. 100-104
    • Sethi, P.1    Lukiw, W.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.