메뉴 건너뛰기




Volumn 39, Issue 22, 2011, Pages 9759-9767

Secondary structure is required for 3′ splice site recognition in yeast

Author keywords

[No Author keywords available]

Indexed keywords

ADENINE; GENOMIC DNA; GUANOSINE; MESSENGER RNA; RNA; URACIL;

EID: 83755172783     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkr662     Document Type: Article
Times cited : (38)

References (38)
  • 1
    • 70350569286 scopus 로고    scopus 로고
    • Mechanisms of alternative splicing regulation: Insights from molecular and genomics approaches
    • Chen,M. and Manley,J.L. (2009) Mechanisms of alternative splicing regulation: insights from molecular and genomics approaches. Nat. Rev. Mol. Cell Biol., 10, 741-754.
    • (2009) Nat. Rev. Mol. Cell Biol. , vol.10 , pp. 741-754
    • Chen, M.1    Manley, J.L.2
  • 2
    • 0021771486 scopus 로고
    • Secondary structure of splice sites in adenovirus mRNA precursors
    • Munroe,S.H. (1984) Secondary structure of splice sites in adenovirus mRNA precursors. Nucleic Acids Res., 12, 8437-8456.
    • (1984) Nucleic Acids Res. , vol.12 , pp. 8437-8456
    • Munroe, S.H.1
  • 3
    • 0022301477 scopus 로고
    • Alternative splicing caused by RNA secondary structure
    • Solnick,D. (1985) Alternative splicing caused by RNA secondary structure. Cell, 43, 667-676. (Pubitemid 16090706)
    • (1985) Cell , vol.43 , Issue.II3 , pp. 667-676
    • Solnick, D.1
  • 4
    • 10044274340 scopus 로고    scopus 로고
    • Influence of RNA secondary structure on the pre-mRNA splicing process
    • DOI 10.1128/MCB.24.24.10505-10514.2004
    • Buratti,E. and Baralle,F.E. (2004) Influence of RNA secondary structure on the pre-mRNA splicing process. Mol.Cell. Biol., 24, 10505-10514. (Pubitemid 39603113)
    • (2004) Molecular and Cellular Biology , vol.24 , Issue.24 , pp. 10505-10514
    • Buratti, E.1    Baralle, F.E.2
  • 5
    • 77649158879 scopus 로고    scopus 로고
    • Role of RNA structure in regulating pre-mRNA splicing
    • Warf,M.B. and Berglund,J.A. (2010) Role of RNA structure in regulating pre-mRNA splicing. Trends Biochem. Sci., 35, 169-178.
    • (2010) Trends Biochem. Sci. , vol.35 , pp. 169-178
    • Warf, M.B.1    Berglund, J.A.2
  • 6
    • 33846925650 scopus 로고    scopus 로고
    • Modulating role of RNA structure in alternative splicing of a critical exon in the spinal muscular atrophy genes
    • DOI 10.1093/nar/gkl1050
    • Singh,N.N., Singh,R.N. and Androphy,E.J. (2007) Modulating role of RNA structure in alternative splicing of a critical exon in the spinal muscular atrophy genes. Nucleic Acids Res., 35, 371-389. (Pubitemid 46232056)
    • (2007) Nucleic Acids Research , vol.35 , Issue.2 , pp. 371-389
    • Singh, N.N.1    Singh, R.N.2    Androphy, E.J.3
  • 8
    • 69049102132 scopus 로고    scopus 로고
    • Modulation of alternative splicing by long-range RNA structures in Drosophila
    • Raker,V.A., Mironov,A.A., Gelfand,M.S. and Pervouchine,D.D. (2009) Modulation of alternative splicing by long-range RNA structures in Drosophila. Nucleic Acids Res., 37, 4533-4544.
    • (2009) Nucleic Acids Res. , vol.37 , pp. 4533-4544
    • Raker, V.A.1    Mironov, A.A.2    Gelfand, M.S.3    Pervouchine, D.D.4
  • 10
    • 44949155424 scopus 로고    scopus 로고
    • L30 Binds the Nascent RPL30 Transcript to Repress U2 snRNP Recruitment
    • DOI 10.1016/j.molcel.2008.05.002, PII S1097276508003304
    • Macias,S., Bragulat,M., Tardiff,D.F. and Vilardell,J. (2008) L30 binds the nascent RPL30 transcript to repress U2 snRNP recruitment. Mol. Cell, 30, 732-742. (Pubitemid 351815128)
    • (2008) Molecular Cell , vol.30 , Issue.6 , pp. 732-742
    • Macias, S.1    Bragulat, M.2    Tardiff, D.F.3    Vilardell, J.4
  • 11
    • 36949031286 scopus 로고    scopus 로고
    • Yeast genome evolution - The origin of the species
    • DOI 10.1002/yea.1515
    • Scannell,D.R., Butler,G. and Wolfe,K.H. (2007) Yeast genome evolution-the origin of the species. Yeast, 24, 929-942. (Pubitemid 350238157)
    • (2007) Yeast , vol.24 , Issue.11 , pp. 929-942
    • Scannell, D.R.1    Butler, G.2    Wolfe, K.H.3
  • 12
    • 50849088978 scopus 로고    scopus 로고
    • Evolutionary convergence on highly-conserved 30 intron structures in intron-poor eukaryotes and insights into the ancestral eukaryotic genome
    • Irimia,M. and Roy,S.W. (2008) Evolutionary convergence on highly-conserved 30 intron structures in intron-poor eukaryotes and insights into the ancestral eukaryotic genome. PLoS Genet., 4, e1000148.
    • (2008) PLoS Genet. , vol.4
    • Irimia, M.1    Roy, S.W.2
  • 13
    • 0029312150 scopus 로고
    • RNA structural patterns and splicing: Molecular basis for an RNA-based enhancer
    • Libri,D., Stutz,F., McCarthy,T. and Rosbash,M. (1995) RNA structural patterns and splicing: molecular basis for an RNA-based enhancer. RNA, 1, 425-436.
    • (1995) RNA , vol.1 , pp. 425-436
    • Libri, D.1    Stutz, F.2    McCarthy, T.3    Rosbash, M.4
  • 14
    • 0029959408 scopus 로고    scopus 로고
    • Intramolecular structure in yeast introns aids the early steps of in vitro spliceosome assembly
    • Charpentier,B. and Rosbash,M. (1996) Intramolecular structure in yeast introns aids the early steps of in vitro spliceosome assembly. RNA, 2, 509-522. (Pubitemid 26374224)
    • (1996) RNA , vol.2 , Issue.6 , pp. 509-522
    • Charpentier, B.1    Rosbash, M.2
  • 15
    • 52049122387 scopus 로고    scopus 로고
    • Correlation between the secondary structure of pre-mRNA introns and the efficiency of splicing in Saccharomyces cerevisiae
    • Rogic,S., Montpetit,B., Hoos,H.H., Mackworth,A.K., Ouellette,B.F. and Hieter,P. (2008) Correlation between the secondary structure of pre-mRNA introns and the efficiency of splicing in Saccharomyces cerevisiae. BMC Genomics, 9, 355.
    • (2008) BMC Genomics , vol.9 , pp. 355
    • Rogic, S.1    Montpetit, B.2    Hoos, H.H.3    MacKworth, A.K.4    Ouellette, B.F.5    Hieter, P.6
  • 16
    • 0022720942 scopus 로고
    • Yeast pre-messenger RNA splicing efficiency depends on critical spacing requirements between the branch point and 3' splice site
    • Cellini,A., Felder,E. and Rossi,J.J. (1986) Yeast pre-messenger RNA splicing efficiency depends on critical spacing requirements between the branch point and 3' splice site. EMBO J., 5, 1023-1030.
    • (1986) EMBO J. , vol.5 , pp. 1023-1030
    • Cellini, A.1    Felder, E.2    Rossi, J.J.3
  • 17
    • 0002337352 scopus 로고    scopus 로고
    • Interaction trap/ two-hybrid system to identify interacting proteins
    • Ausubel,F.M., Brent,R., Kingston,R.E., Moore,D.D., Seidman,J.D., Smith,J.A. and Struhl,K. (eds) , Wiley, New York, Unit 20.1
    • Golemis,E.A., Gyuris,J. and Brent,R. (1996) Interaction trap/ two-hybrid system to identify interacting proteins. In Ausubel,F.M., Brent,R., Kingston,R.E., Moore,D.D., Seidman,J.D., Smith,J.A. and Struhl,K. (eds), Current Protocols in Molecular Biology, Wiley, New York, Unit 20.1.
    • (1996) Current Protocols in Molecular Biology
    • Golemis, E.A.1    Gyuris, J.2    Brent, R.3
  • 18
    • 0027516055 scopus 로고
    • Mutational analysis of pre-mRNA splicing in Saccharomyces cerevisiae using a sensitive new reporter gene, CUP1
    • Lesser,C.F. and Guthrie,C. (1993) Mutational analysis of pre-mRNA splicing in Saccharomyces cerevisiae using a sensitive new reporter gene, CUP1. Genetics, 133, 851-863. (Pubitemid 23097273)
    • (1993) Genetics , vol.133 , Issue.4 , pp. 851-863
    • Lesser, C.F.1    Guthrie, C.2
  • 19
    • 84897585709 scopus 로고    scopus 로고
    • In-line probing analysis of riboswitches
    • Regulski,E.E. and Breaker,R.R. (2008) In-line probing analysis of riboswitches. Methods Mol. Biol., 419, 53-67.
    • (2008) Methods Mol. Biol. , vol.419 , pp. 53-67
    • Regulski, E.E.1    Breaker, R.R.2
  • 21
    • 32544440797 scopus 로고    scopus 로고
    • RNAshapes: An integrated RNA analysis package based on abstract shapes
    • DOI 10.1093/bioinformatics/btk010
    • Steffen,P., Voss,B., Rehmsmeier,M., Reeder,J. and Giegerich,R. (2006) RNAshapes: an integrated RNA analysis package based on abstract shapes. Bioinformatics, 22, 500-503. (Pubitemid 43231429)
    • (2006) Bioinformatics , vol.22 , Issue.4 , pp. 500-503
    • Steffen, P.1    Voss, B.2    Rehmsmeier, M.3    Reeder, J.4    Giegerich, R.5
  • 22
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • DOI 10.1093/nar/gkg595
    • Zuker,M. (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res., 31, 3406-3415. (Pubitemid 37442169)
    • (2003) Nucleic Acids Research , vol.31 , Issue.13 , pp. 3406-3415
    • Zuker, M.1
  • 23
    • 40449139010 scopus 로고    scopus 로고
    • The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data
    • DOI 10.1038/nature06684, PII NATURE06684
    • Parisien,M. and Major,F. (2008) The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data. Nature, 452, 51-55. (Pubitemid 351355097)
    • (2008) Nature , vol.452 , Issue.7183 , pp. 51-55
    • Parisien, M.1    Major, F.2
  • 24
    • 0025780938 scopus 로고
    • Unexpected point mutations activate cryptic 3' splice sites by perturbing a natural secondary structure within a yeast intron
    • Deshler,J.O. and Rossi,J.J. (1991) Unexpected point mutations activate cryptic 3' splice sites by perturbing a natural secondary structure within a yeast intron. Genes Dev., 5, 1252-1263. (Pubitemid 21906035)
    • (1991) Genes and Development , vol.5 , Issue.7 , pp. 1252-1263
    • Deshler, J.O.1    Rossi, J.J.2
  • 25
    • 60349104299 scopus 로고    scopus 로고
    • The spliceosome: Design principles of a dynamic RNP machine
    • Wahl,M.C., Will,C.L. and Luhrmann,R. (2009) The spliceosome: design principles of a dynamic RNP machine. Cell, 136, 701-718.
    • (2009) Cell , vol.136 , pp. 701-718
    • Wahl, M.C.1    Will, C.L.2    Luhrmann, R.3
  • 26
    • 0023338718 scopus 로고
    • A novel role for the 3' region of introns in pre-mRNA splicing of Saccharomyces cerevisiae
    • Rymond,B.C., Torrey,D.D. and Rosbash,M. (1987) A novel role for the 3' region of introns in pre-mRNA splicing of Saccharomyces cerevisiae. Genes Dev., 1, 238-246.
    • (1987) Genes Dev. , vol.1 , pp. 238-246
    • Rymond, B.C.1    Torrey, D.D.2    Rosbash, M.3
  • 27
    • 0028339804 scopus 로고
    • Formation of the yeast splicing complex A1 and association of the splicing factor PRP19 with the pre-mRNA are independent of the 3' region of the intron
    • Cheng,S.C. (1994) Formation of the yeast splicing complex A1 and association of the splicing factor PRP19 with the pre-mRNA are independent of the 3' region of the intron. Nucleic Acids Res., 22, 1548-1554.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 1548-1554
    • Cheng, S.C.1
  • 28
    • 0033576626 scopus 로고    scopus 로고
    • Functional recognition of the 3' splice site AG by the splicing factor U2AF35
    • Wu,S., Romfo,C.M., Nilsen,T.W. and Green,M.R. (1999) Functional recognition of the 3' splice site AG by the splicing factor U2AF35. Nature, 402, 832-835.
    • (1999) Nature , vol.402 , pp. 832-835
    • Wu, S.1    Romfo, C.M.2    Nilsen, T.W.3    Green, M.R.4
  • 29
    • 0033973143 scopus 로고    scopus 로고
    • Bimolecular exon ligation by the human spliceosome bypasses early 3' splice site AG recognition and requires NTP hydrolysis
    • DOI 10.1017/S1355838200001862
    • Anderson,K. and Moore,M.J. (2000) Bimolecular exon ligation by the human spliceosome bypasses early 3' splice site AG recognition and requires NTP hydrolysis. RNA, 6, 16-25. (Pubitemid 30069033)
    • (2000) RNA , vol.6 , Issue.1 , pp. 16-25
    • Anderson, K.1    Moore, M.J.2
  • 30
    • 0025098474 scopus 로고
    • Exon definition may facilitate splice site selection in RNAs with multiple exons
    • Robberson,B.L., Cote,G.J. and Berget,S.M. (1990) Exon definition may facilitate splice site selection in RNAs with multiple exons. Mol. Cell Biol., 10, 84-94.
    • (1990) Mol. Cell Biol. , vol.10 , pp. 84-94
    • Robberson, B.L.1    Cote, G.J.2    Berget, S.M.3
  • 31
    • 0028895417 scopus 로고
    • Exon recognition in vertebrate splicing
    • Berget,S.M. (1995) Exon recognition in vertebrate splicing. J. Biol. Chem., 270, 2411-2414.
    • (1995) J. Biol. Chem. , vol.270 , pp. 2411-2414
    • Berget, S.M.1
  • 32
    • 33745048938 scopus 로고    scopus 로고
    • A class of human exons with predicted distant branch points revealed by analysis of AG dinucleotide exclusion zones
    • Gooding,C., Clark,F., Wollerton,M.C., Grellscheid,S.N., Groom,H. and Smith,C.W. (2006) A class of human exons with predicted distant branch points revealed by analysis of AG dinucleotide exclusion zones. Genome Biol., 7, R1.
    • (2006) Genome Biol. , vol.7
    • Gooding, C.1    Clark, F.2    Wollerton, M.C.3    Grellscheid, S.N.4    Groom, H.5    Smith, C.W.6
  • 33
    • 0027214101 scopus 로고
    • Scanning and competition between AGs are involved in 3' splice site selection in mammalian introns
    • Smith,C.W., Chu,T.T. and Nadal-Ginard,B. (1993) Scanning and competition between AGs are involved in 3' splice site selection in mammalian introns. Mol. Cell Biol., 13, 4939-4952. (Pubitemid 23220399)
    • (1993) Molecular and Cellular Biology , vol.13 , Issue.8 , pp. 4939-4952
    • Smith, C.W.J.1    Tung Tammy Chu2    Nadal-Ginard, B.3
  • 34
    • 77950231039 scopus 로고    scopus 로고
    • Four exons of the serotonin receptor 4 gene are associated with multiple distant branch points
    • Hallegger,M., Sobala,A. and Smith,C.W. (2010) Four exons of the serotonin receptor 4 gene are associated with multiple distant branch points. RNA, 16, 839-851.
    • (2010) RNA , vol.16 , pp. 839-851
    • Hallegger, M.1    Sobala, A.2    Smith, C.W.3
  • 35
    • 0026030643 scopus 로고
    • A U-rich tract enhances usage of an alternative 3' splice site in yeast
    • Patterson,B. and Guthrie,C. (1991) A U-rich tract enhances usage of an alternative 3' splice site in yeast. Cell, 64, 181-187. (Pubitemid 121001149)
    • (1991) Cell , vol.64 , Issue.1 , pp. 181-187
    • Patterson, B.1    Guthrie, C.2
  • 36
    • 1842330298 scopus 로고    scopus 로고
    • The role of branchpoint-3' splice site spacing and interaction between intron terminal nucleotides in 3' splice site selection in Saccharomyces cerevisiae
    • DOI 10.1093/emboj/16.4.779
    • Luukkonen,B.G. and Seraphin,B. (1997) The role of branchpoint-3' splice site spacing and interaction between intron terminal nucleotides in 3' splice site selection in Saccharomyces cerevisiae. EMBO J., 16, 779-792. (Pubitemid 27089525)
    • (1997) EMBO Journal , vol.16 , Issue.4 , pp. 779-792
    • Luukkonen, B.G.M.1    Seraphin, B.2
  • 37
    • 0030694848 scopus 로고    scopus 로고
    • Crosslinking of the U5 snRNP-specific 116-kDa protein to RNA hairpins that block step 2 of splicing
    • Liu,Z.R., Laggerbauer,B., Luhrmann,R. and Smith,C.W. (1997) Crosslinking of the U5 snRNP-specific 116-kDa protein to RNA hairpins that block step 2 of splicing. RNA, 3, 1207-1219. (Pubitemid 27495094)
    • (1997) RNA , vol.3 , Issue.11 , pp. 1207-1219
    • Liu, Z.-R.1    Laggerbauer, B.2    Luhrmann, R.3    Smith, C.W.J.4
  • 38
    • 16344385067 scopus 로고    scopus 로고
    • Complex spliceosomal organization ancestral to extant eukaryotes
    • DOI 10.1093/molbev/msi091
    • Collins,L. and Penny,D. (2005) Complex spliceosomal organization ancestral to extant eukaryotes. Mol. Biol. Evol., 22, 1053-1066. (Pubitemid 40471418)
    • (2005) Molecular Biology and Evolution , vol.22 , Issue.4 , pp. 1053-1066
    • Collins, L.1    Penny, D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.