Multi-centre evaluation of the speed-oligo Mycobacteria assay for differentiation of Mycobacterium spp. in clinical isolates

BMC Infectious Diseases

Volumn 11, Issue , 2011, Pages

  Hofmann Thiel, Sabine ^a   Turaev, Laziz ^b   Alnour, Tarig ^a,c   Drath, Lore ^d   Müllerova, Maria ^e   Hoffmann, Harald ^a  

^a SYNLAB ACADEMY   (Germany)

^b National Reference Laboratory of Tuberculosis   (Uzbekistan)

^c ALZAIEM ALAZHARI UNIVERSITY   (Sudan)

^d Bioscientia Center for Human Genetics   (Germany)

^e KLINLAB   (Czech Republic)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIUM CULTURE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; CLINICAL EFFECTIVENESS; CONTROLLED STUDY; DIAGNOSTIC VALUE; DNA DETERMINATION; DNA EXTRACTION; DNA PROBE; FALSE POSITIVE RESULT; GENE AMPLIFICATION; GENE TARGETING; GENOTYPE; GEOGRAPHIC DISTRIBUTION; HYBRIDIZATION; INTERMETHOD COMPARISON; MYCOBACTERIUM; MYCOBACTERIUM MARINUM; MYCOBACTERIUM PEREGRINUM; NONHUMAN; POLYMERASE CHAIN REACTION; SENSITIVITY ANALYSIS; SPECIES DIFFERENTIATION; SPEED OLIGO MYCOBACTERIA ASSAY; CLASSIFICATION; CLINICAL TRIAL; COMPARATIVE STUDY; EVALUATION; GENETICS; HUMAN; ISOLATION AND PURIFICATION; LABORATORY DIAGNOSIS; MICROBIOLOGY; MULTICENTER STUDY; MYCOBACTERIOSIS; SENSITIVITY AND SPECIFICITY;

BACTERIAL DNA;

DNA PROBES; DNA, BACTERIAL; FALSE POSITIVE REACTIONS; HUMANS; MYCOBACTERIUM; MYCOBACTERIUM INFECTIONS; POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY;

EID: 83655203234     PISSN: None     EISSN: 14712334     Source Type: Journal    
DOI: 10.1186/1471-2334-11-353     Document Type: Article

References (29)

1. WHO REPORT 2007 Global Tuberculosis Control. Surveillance, Planning, Financing. WHO REPORT 2007., http://www.who.int/tb/publications/global_report/2007/pdf/full.pdf
2. Tortoli E. Clinical manifestations of nontuberculous mycobacteria infections. Clin Microbiol Infect 2009, 15(10):906-910. 10.1111/j.1469-0691.2009.03014.x, 19845702.
3. Piersimoni C, Scarparo C. Pulmonary infections associated with non-tuberculous mycobacteria in immunocompetent patients. Lancet Infect Dis 2008, 8(5):323-334. 10.1016/S1473-3099(08)70100-2, 18471777.
4. Kox LF, van Leeuwen J, Knijper S, Jansen HM, Kolk AH. PCR assay based on DNA coding for 16S rRNA for detection and identification of mycobacteria in clinical samples. J Clin Microbiol 1995, 33(12):3225-3233. 228678, 8586707.
5. Patel JB, Leonard DG, Pan X, Musser JM, Berman RE, Nachamkin I. Sequence-based identification of Mycobacterium species using the MicroSeq 500 16S rDNA bacterial identification system. J Clin Microbiol 2000, 38(1):246-251. 88703, 10618095.
6. Kim HJ, Mun HS, Kim H, Oh EJ, Ha Y, Bai GH, Park YG, Cha CY, Kook YH, Kim BJ. Differentiation of Mycobacterial species by hsp65 duplex PCR followed by duplex-PCR-based restriction analysis and direct sequencing. J Clin Microbiol 2006, 44(11):3855-3862. 10.1128/JCM.01214-06, 1698348, 16928964.
7. Roth A, Fischer M, Hamid ME, Michalke S, Ludwig W, Mauch H. Differentiation of phylogenetically related slowly growing mycobacteria based on 16S-23S rRNA gene internal transcribed spacer sequences. J Clin Microbiol 1998, 36(1):139-147. 124824, 9431937.
8. Tortoli E, Nanetti A, Piersimoni C, Cichero P, Farina C, Mucignat G, Scarparo C, Bartolini L, Valentini R, Nista D, et al. Performance assessment of new multiplex probe assay for identification of mycobacteria. J Clin Microbiol 2001, 39(3):1079-1084. 10.1128/JCM.39.3.1079-1084.2001, 87876, 11230430.
9. Scarparo C, Piccoli P, Rigon A, Ruggiero G, Nista D, Piersimoni C. Direct identification of mycobacteria from MB/BacT alert 3D bottles: comparative evaluation of two commercial probe assays. J Clin Microbiol 2001, 39(9):3222-3227. 10.1128/JCM.39.9.3222-3227.2001, 88322, 11526154.
10. Lebrun L, Weill FX, Lafendi L, Houriez F, Casanova F, Gutierrez MC, Ingrand D, Lagrange P, Vincent V, Herrmann JL. Use of the INNO-LiPA-MYCOBACTERIA assay (version 2) for identification of Mycobacterium avium-Mycobacterium intracellulare-Mycobacterium scrofulaceum complex isolates. J Clin Microbiol 2005, 43(6):2567-2574. 10.1128/JCM.43.6.2567-2574.2005, 1151901, 15956365.
11. Russo C, Tortoli E, Menichella D. Evaluation of the new GenoType Mycobacterium assay for identification of mycobacterial species. J Clin Microbiol 2006, 44(2):334-339. 10.1128/JCM.44.2.334-339.2006, 1392669, 16455880.
12. Padilla E, Gonzalez V, Manterola JM, Perez A, Quesada MD, Gordillo S, Vilaplana C, Pallares MA, Molinos S, Sanchez MD, et al. Comparative evaluation of the new version of the INNO-LiPA Mycobacteria and genotype Mycobacterium assays for identification of Mycobacterium species from MB/BacT liquid cultures artificially inoculated with Mycobacterial strains. J Clin Microbiol 2004, 42(7):3083-3088. 10.1128/JCM.42.7.3083-3088.2004, 446295, 15243064.
13. Makinen J, Sarkola A, Marjamaki M, Viljanen MK, Soini H. Evaluation of genotype and LiPA MYCOBACTERIA assays for identification of Finnish mycobacterial isolates. J Clin Microbiol 2002, 40(9):3478-3481. 10.1128/JCM.40.9.3478-3481.2002, 130730, 12202597.
14. Richter E, Rusch-Gerdes S, Hillemann D. Evaluation of the GenoType Mycobacterium Assay for identification of mycobacterial species from cultures. J Clin Microbiol 2006, 44(5):1769-1775. 10.1128/JCM.44.5.1769-1775.2006, 1479216, 16672405.
15. Gitti Z, Neonakis I, Fanti G, Kontos F, Maraki S, Tselentis Y. Use of the GenoType Mycobacterium CM and AS assays to analyze 76 nontuberculous mycobacterial isolates from Greece. J Clin Microbiol 2006, 44(6):2244-2246. 10.1128/JCM.02088-05, 1489412, 16757630.
16. Quezel-Guerraz NM, Arriaza MM, Avila JA, Sanchez-Yebra Romera WE, Martinez-Lirola MJ. Evaluation of the Speed-oligo(R) Mycobacteria assay for identification of Mycobacterium spp. from fresh liquid and solid cultures of human clinical samples. Diagn Microbiol Infect Dis 2010, 68(2):123-131. 10.1016/j.diagmicrobio.2010.06.006, 20846584.
17. Moore JE, Kruijshaar ME, Ormerod LP, Drobniewski F, Abubakar I. Increasing reports of non-tuberculous mycobacteria in England, Wales and Northern Ireland, 1995-2006. BMC Public Health 2010, 10:612. 10.1186/1471-2458-10-612, 2964631, 20950421.
18. van Ingen J, Bendien SA, de Lange WC, Hoefsloot W, Dekhuijzen PN, Boeree MJ, van Soolingen D. Clinical relevance of non-tuberculous mycobacteria isolated in the Nijmegen-Arnhem region, The Netherlands. Thorax 2009, 64(6):502-506. 10.1136/thx.2008.110957, 19213773.
19. Cassidy PM, Hedberg K, Saulson A, McNelly E, Winthrop KL. Nontuberculous mycobacterial disease prevalence and risk factors: a changing epidemiology. Clin Infect Dis 2009, 49(12):e124-e129. 10.1086/648443, 19911942.
20. Marras TK, Chedore P, Ying AM, Jamieson F. Isolation prevalence of pulmonary non-tuberculous mycobacteria in Ontario, 1997 2003. Thorax 2007, 62(8):661-666. 10.1136/thx.2006.070797, 2117272, 17311842.
21. Rieder HL, Van Deun A, Kam KM, Kim SJ, Chonde TM, Trebucq A, Urbanczik R. Priorities for Tuberculosis Bacteriology Services in Low-Income Countries. 2007, Paris, France, Second.
22. Sarkola A, Makinen J, Marjamaki M, Marttila HJ, Viljanen MK, Soini H. Prospective evaluation of the GenoType assay for routine identification of mycobacteria. Eur J Clin Microbiol Infect Dis 2004, 23(8):642-645.
23. Diguimbaye-Djaibe C, Vincent V, Schelling E, Hilty M, Ngandolo R, Mahamat HH, Pfyffer G, Baggi F, Tanner M, Zinsstag J. Species identification of non-tuberculous mycobacteria from humans and cattle of Chad. Schweiz Arch Tierheilkd 2006, 148(5):251-256. 10.1024/0036-7281.148.5.251, 16739898.
24. Chilima BZ, Clark IM, Floyd S, Fine PE, Hirsch PR. Distribution of environmental mycobacteria in Karonga District, northern Malawi. Appl Environ Microbiol 2006, 72(4):2343-2350. 10.1128/AEM.72.4.2343-2350.2006, 1449038, 16597928.
25. Makinen J, Marjamaki M, Marttila H, Soini H. Evaluation of a novel strip test, GenoType Mycobacterium CM/AS, for species identification of mycobacterial cultures. Clin Microbiol Infect 2006, 12(5):481-483. 10.1111/j.1469-0691.2006.01380.x, 16643527.
26. Griffith DE, Aksamit T, Brown-Elliott BA, Catanzaro A, Daley C, Gordin F, Holland SM, Horsburgh R, Huitt G, Iademarco MF, et al. An official ATS/IDSA statement: diagnosis, treatment, and prevention of nontuberculous mycobacterial diseases. Am J Respir Crit Care Med 2007, 175(4):367-416. 10.1164/rccm.200604-571ST, 17277290.
27. Harmsen D, Rothganger J, Frosch M, Albert J. RIDOM: Ribosomal Differentiation of Medical Micro-organisms Database. Nucleic Acids Res 2002, 30(1):416-417. 10.1093/nar/30.1.416, 99060, 11752353.
28. Boddinghaus B, Wolters J, Heikens W, Bottger EC. Phylogenetic analysis and identification of different serovars of Mycobacterium intracellulare at the molecular level. FEMS Microbiol Lett 1990, 58(2):197-203.
29. Askgaard DS, Giese SB, Thybo S, Lerche A, Bennedsen J. Serovars of Mycobacterium avium complex isolated from patients in Denmark. J Clin Microbiol 1994, 32(11):2880-2882. 264184, 7852596.