Evaluation of GenoType and LiPA MYCOBACTERIA assays for identification of finnish mycobacterial isolates

Journal of Clinical Microbiology

Volumn 40, Issue 9, 2002, Pages 3478-3481

  Mäkinen, Johanna ^a   Sarkola, Aleksi ^a   Marjamäki, Merja ^a   Viljanen, Matti K ^a   Soini, Hanna ^a  

^a NATIONAL PUBLIC HEALTH INSTITUTE   (Finland)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; DIAGNOSTIC ACCURACY; DIAGNOSTIC TEST; GENETIC VARIABILITY; INTERMETHOD COMPARISON; MYCOBACTERIUM; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SENSITIVITY AND SPECIFICITY; STRAIN DIFFERENCE; ANALYTICAL EQUIPMENT; CLASSIFICATION; DNA PROBE; EVALUATION; FINLAND; GENETICS; GENOTYPE; HUMAN; METHODOLOGY; MICROBIOLOGY; MYCOBACTERIOSIS; NUCLEIC ACID HYBRIDIZATION; TEST STRIP;

BACTERIAL TYPING TECHNIQUES; DNA PROBES; DNA, BACTERIAL; FINLAND; GENOTYPE; HUMAN; MYCOBACTERIUM; MYCOBACTERIUM INFECTIONS; NUCLEIC ACID HYBRIDIZATION; POLYMERASE CHAIN REACTION; REAGENT KITS, DIAGNOSTIC; REAGENT STRIPS; HUMANS;

BACTERIAL DNA;

EID: 0036708350     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.40.9.3478-3481.2002     Document Type: Article

References (25)

1. RFLP of rRNA genes and sequencing of the 16S-23S rDNA intergenic spacer region of ammonia-oxidizing bacteria: A phylogenetic approach
2. Identification and strain differentiation of Mycobacterium species on the basis of DNA 16S-23S spacer region polymorphism
3. Efficient discrimination of Mycobacterium tuberculosis strains by 16S-23S spacer region-based random amplified polymorphic DNA analysis
4. Heterogeneity and clonality among isolates of Mycobacterium kansasii: Implications for epidemiological and pathogenicity studies
5. Use of PCR-restriction fragment length polymorphism analysis of the hsp65 gene for rapid identification of mycobacteria in Brazil
6. Allele-specific PCR method based on pncA and oxyR sequences for distinguishing Mycobacterium bovis from Mycobacterium tuberculosis: Intraspecific M. bovis pncA sequence polymorphism
7. Epidemiology of infection by nontuberculous mycobacteria
8. Species identification of mycobacteria using rDNA sequencing
9. Genotypic identification of mycobacteria by nucleic acid sequence determination: Report of a 2-year experience in a clinical laboratory
10. Description of a novel Mycobacterium simiae allelic variant isolated from Caribbean AIDS patients by PCR-restriction enzyme analysis and sequencing of hsp65 gene
11. Genetic diversity of Mycobacterium avium recovered from AIDS patients in the Caribbean as studied by a consensus IS1245-RFLP method and pulsed-field gel electrophoresis
12. Evaluation of the LiPA MYCOBACTERIA assay for identification of mycobacterial species from BACTEC 12B bottles
13. Molecular typing of Mycobacterium avium isolates by sequencing of the 16S-23S rDNA internal transcribed spacer and comparison with IS1245-based fingerprinting
14. Genotypic characterization of five subspecies of Mycobacterium kansasii
15. hsp65 sequencing for identification of rapidly growing mycobacteria
16. Differentiation of phylogenetically related slowly growing mycobacteria based on 16S-23S rRNA gene internal transcribed spacer sequences
17. Novel diagnostic algorithm for identification of mycobacteria using genus-specific amplification of the 16S-23S rRNA gene spacer and restriction endonucleases
18. Mycobacterial taxonomy
19. Identification of mycobacteria by PCR-based sequence determination of the 32-kilodalton protein gene
20. Molecular diagnosis of mycobacteria
21. Rapid identification of mycobacteria to the species level using INNO-LiPA Mycobacteria, a reverse hybridization assay
22. PCR identification of Mycobacterium bovis BCG
23. Routine use of PCR-restriction fragment length polymorphism analysis for identification of mycobacteria growing in liquid media
24. Rapid identification of mycobacteria to the species level by polymerase chain reaction and restriction enzyme analysis
25. Performance assessment of new multiplex probe assay for identification of mycobacteria