Assessing genetic polymorphisms using DNA extracted from cells present in saliva samples

BMC Medical Research Methodology

Volumn 11, Issue , 2011, Pages

  Nemoda, Zsofia ^a   Horvat Gordon, Maria ^b   Fortunato, Christine K ^c   Beltzer, Emilie K ^c   Scholl, Jessica L ^b   Granger, Douglas A ^d  

^a SEMMELWEIS UNIVERSITY   (Hungary)

^b Salimetrics LLC   (United States)

^c PENNSYLVANIA STATE UNIVERSITY   (United States)

^d JOHNS HOPKINS UNIVERSITY SCHOOL OF NURSING   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CATECHOL METHYLTRANSFERASE; DNA; SEROTONIN TRANSPORTER; SLC6A4 PROTEIN, HUMAN;

ADULT; ARTICLE; GENETICS; GENOTYPE; GENOTYPING TECHNIQUE; HUMAN; ISOLATION AND PURIFICATION; LABORATORY DIAGNOSIS; METABOLISM; METHODOLOGY; POLYMERASE CHAIN REACTION; REPRODUCIBILITY; SALIVA; SINGLE NUCLEOTIDE POLYMORPHISM; VARIABLE NUMBER OF TANDEM REPEAT;

ADULT; CATECHOL O-METHYLTRANSFERASE; DNA; GENOTYPE; GENOTYPING TECHNIQUES; HUMANS; MINISATELLITE REPEATS; POLYMERASE CHAIN REACTION; POLYMORPHISM, SINGLE NUCLEOTIDE; REPRODUCIBILITY OF RESULTS; SALIVA; SEROTONIN PLASMA MEMBRANE TRANSPORT PROTEINS; SPECIMEN HANDLING;

EID: 83655196896     PISSN: None     EISSN: 14712288     Source Type: Journal    
DOI: 10.1186/1471-2288-11-170     Document Type: Article

References (36)

1. Genomewide association studies: history, rationale, and prospects for psychiatric disorders. Psychiatric GWAS Consortium Coordinating Committee, Cichon S, Craddock N, Daly M, Faraone SV, Gejman PV, et al. Am J Psychiatry 2009 166 540 556 19339359
2. Evaluation of saliva as a source of human DNA for population and association studies. Quinque D, Kittler R, Kayser M, Stoneking M, Nasidze I, Anal Biochem 2006 353 272 277 10.1016/j.ab.2006.03.021 16620753 (Pubitemid 43775441)
3. New saliva DNA collection method compared to buccal cell collection techniques for epidemiological studies. Rogers NL, Cole SA, Lan HC, Crossa A, Demerath EW, Am J Hum Biol 2007 19 319 326 10.1002/ajhb.20586 17421001 (Pubitemid 46839443)
4. DNA yield and quality of saliva samples and suitability for large-scale epidemiological studies in children. Koni AC, Scott RA, Wang G, Bailey ME, Peplies J, Bammann K, et al. Int J Obes (Lond) 2011 35 113 118
5. Inhibitory effect of salivary fluids on PCR: potency and removal. Ochert AS, Boulter AW, Birnbaum W, Johnson NW, Teo CG, PCR Methods Appl 1994 3 365 368 7920243
6. Peer victimization and aggression: moderation by individual differences in salivary cortisol and alpha-amylase. Rudolph KD, Troop-Gordon W, Granger DA, J Abnorm Child Psychol 2010 38 843 856 10.1007/s10802-010-9412-3 20405198
7. Testosterone and child and adolescent adjustment: the moderating role of parent-child relationships. Booth A, Johnson DR, Granger DA, Crouter AC, McHale S, Dev Psychol 2003 39 85 98 12518811 (Pubitemid 37177414)
8. The association between children's sleep disruption and salivary interleukin-6. El-Sheikh M, Buckhalt JA, Granger DA, Erath SA, Acebo C, J Sleep Res 2007 16 188 197 10.1111/j.1365-2869.2007.00593.x 17542949 (Pubitemid 46850095)
9. Early childhood stress is associated with elevated antibody levels to herpes simplex virus type 1. Shirtcliff EA, Coe CL, Pollak SD, Proc Natl Acad Sci USA 2009 106 2963 2967 10.1073/pnas.0806660106 19188604
10. Functional genetic polymorphisms in serotonin and dopamine gene systems and their significance in behavioural disorders. D'Souza UM, Craig IW, Prog Brain Res 2008 172 73 98 18772028
11. Human catechol-O-methyltransferase pharmacogenetics: description of a functional polymorphism and its potential application to neuropsychiatric disorders. Lachman HM, Papolos DF, Saito T, Yu YM, Szumlanski CL, Weinshilboum RM, Pharmacogenetics 1996 6 243 250 10.1097/00008571-199606000-00007 8807664 (Pubitemid 26226317)
12. Functional analysis of genetic variation in catechol-O-methyltransferase (COMT): effects on mRNA, protein, and enzyme activity in postmortem human brain. Chen J, Lipska BK, Halim N, Ma QD, Matsumoto M, Melhem S, et al. Am J Hum Genet 2004 75 807 821 10.1086/425589 15457404 (Pubitemid 39390488)
13. Association of anxiety-related traits with a polymorphism in the serotonin transporter gene regulatory region. Lesch KP, Bengel D, Heils A, Sabol SZ, Greenberg BD, Petri S, et al. Science 1996 274 1527 1531 10.1126/science.274.5292.1527 8929413 (Pubitemid 26403928)
14. The human serotonin transporter gene polymorphism - basic research and clinical implications. Heils A, Mossner R, Lesch KP, J Neural Transm 1997 104 1005 1014 10.1007/BF01273314 9503253 (Pubitemid 28031667)
15. Implications for diagnostics in the biochemistry and physiology of saliva. Nieuw Amerongen AV, Ligtenberg AJ, Veerman EC, Ann N Y Acad Sci 2007 1098 1 6 10.1196/annals.1384.033 17303829 (Pubitemid 47092554)
16. Salivary cortisol as indicators of pain in preterm infants: a pilot study. Herrington CJ, Olomu IN, Geller SM, Clin Nurs Res 2004 13 53 68 10.1177/1054773803259665 14768767 (Pubitemid 38543407)
17. Integration of salivary biomarkers into developmental and behaviorally-oriented research: problems and solutions for collecting specimens. Granger DA, Kivlighan KT, Fortunato C, Harmon AG, Hibel LC, Schwartz EB, et al. Physiol Behav 2007 92 583 590 10.1016/j.physbeh.2007.05.004 17572453 (Pubitemid 350016121)
18. Biobehavioral correlates of relocation in the frail elderly: salivary cortisol, affect, and cognitive function. Hodgson N, Freedman VA, Granger DA, Erno A, J Am Geriatr Soc 2004 52 1856 1862 10.1111/j.1532-5415.2004.52505.x 15507062 (Pubitemid 41710269)
19. Salivary testosterone measurements: collecting, storing, and mailing saliva samples. Dabbs JM Jr, Physiol Behav 1991 49 815 817 10.1016/0031-9384(91) 90323-G 1881989
20. Attachment, temperament, and adrenocortical activity in infancy: A study of psychoendocrine regulation. Gunnar MR, Mangelsdorf S, Larson M, Hertsgaard L, Dev Psychol 1989 25 355 363
21. Measuring salivary cortisol in studies of child development: watch out - what goes in may not come out of saliva collection devices. Harmon AG, Hibel LC, Rumyantseva O, Granger DA, Dev Psychobiol 2007 49 495 500 10.1002/dev.20231 17577235 (Pubitemid 47171887)
22. Salivary testosterone concentration of Aymara men native to 3600 m. Beall CM, Worthman CM, Stallings J, Strohl KP, Brittenham GM, Barragan M, Ann Hum Biol 1992 19 67 78 10.1080/03014469200001932 1734824
23. Social economics of childhood glucocorticoid stress response and health. Flinn MV, England BG, Am J Phys Anthropol 1997 102 33 53 10.1002/(SICI)1096- 8644(199701)102:1<33::AID-AJPA4>3.0.CO;2-E 9034037 (Pubitemid 27074915)
24. New enzyme immunoassay for salivary cortisol. Raff H, Homar PJ, Skoner DP, Clin Chem 2003 49 203 204 10.1373/49.1.203 12507989 (Pubitemid 36078582)
25. Stability of salivary steroids: the influences of storage, food and dental care. Gröschl M, Wagner R, Rauh M, Dörr HG, Steroids 2001 66 737 741 10.1016/S0039-128X(01)00111-8 11522335 (Pubitemid 32755770)
26. Salivary alpha-amylase stability, diurnal profile and lack of response to the cold hand test in young women. O'Donnell K, Kammerer M, O'Reilly R, Taylor A, Glover V, Stress 2009 12 549 554 10.3109/10253890902822664 19658030
27. Long-term stability of salivary cortisol. Garde AH, Hansen AM, Scand J Clin Lab Invest 2005 65 433 436 10.1080/00365510510025773 16081365 (Pubitemid 41134091)
28. Measurement of immunoglobulin A in saliva by particle-enhanced nephelometric immunoassay: sample collection, limits of quantitation, precision, stability and reference range. Booth CK, Dwyer DB, Pacque PF, Ball MJ, Ann Clin Biochem 2009 46 401 406 10.1258/acb.2009.008248 19641004
29. Human glandular salivas: their separate collection and analysis. Veerman EC, van den Keybus PA, Vissink A, Nieuw Amerongen AV, Eur J Oral Sci 1996 104 346 352 10.1111/j.1600-0722.1996.tb00090.x 8930581 (Pubitemid 126785384)
30. A new device for collecting saliva for cortisol determination. de Weerth C, Jansen J, Vos MH, Maitimu I, Lentjes EG, Psychoneuroendocrinology 2007 32 1144 1148 10.1016/j.psyneuen.2007.07.005 17850983 (Pubitemid 350086818)
31. Salivary flow and alpha-amylase: collection technique, duration, and oral fluid type. Beltzer EK, Fortunato CK, Guaderrama MM, Peckins MK, Garramone BM, Granger DA, Physiol Behav 2010 101 289 296 10.1016/j.physbeh.2010.05.016 20515701
32. Differences in saliva collection location and disparities in baseline and diurnal rhythms of alpha-amylase: a preliminary note of caution. Harmon AG, Towe-Goodman NR, Fortunato CK, Granger DA, Horm Behav 2008 54 592 596 10.1016/j.yhbeh.2008.05.019 18640119
33. Simultaneous genotyping of four functional loci of human SLC6A4, with a reappraisal of 5-HTTLPR and rs25531. Wendland JR, Martin BJ, Kruse MR, Lesch KP, Murphy DL, Mol Psychiatry 2006 11 224 226 10.1038/sj.mp.4001789 16402131
34. Comparison of the genotyping results using DNA obtained from blood and saliva. Philibert RA, Zadorozhnyaya O, Beach SR, Brody GH, Psychiatr Genet 2008 18 275 281 10.1097/YPG.0b013e3283060f81 19018232
35. Clinical trial participant characteristics and saliva and DNA metrics. Nishita DM, Jack LM, McElroy M, McClure JB, Richards J, Swan GE, Bergen AW, BMC Med Res Methodol 2009 9 71 10.1186/1471-2288-9-71 19874586
36. Wong D, Salivary Diagnostics Hoboken: Wiley-Blackwell 2008