Plasmodium vivax lineages: Geographical distribution, tandem repeat polymorphism, and phylogenetic relationship

Malaria Journal

Volumn 10, Issue , 2011, Pages

  Prajapati, Surendra K ^a   Joshi, Hema ^a   Shalini, Sneh ^a   Patarroyo, Manuel A ^b,c   Suwanarusk, Rossarin ^d   Kumar, Ashwani ^e   Sharma, Surya K ^a   Eapen, Alex ^e   Dev, Vas ^e   Bhatt, Rajendra M ^a   Valecha, Neena ^a   Nosten, Francois ^f,g,h   Rizvi, Moshahid A ⁱ   Dash, Aditya P ^a,j  

^a NATIONAL INSTITUTE OF MALARIA RESEARCH   (India)

^b Fundation Instituto de Inmunología de Colombia   (Colombia)

^c UNIVERSIDAD DEL ROSARIO   (Colombia)

^d AGENCY FOR SCIENCE   (Singapore)

^e NIMR Field Station   (India)

^f SHOKLO MALARIA RESEARCH UNIT   (Thailand)

^g MAHIDOL UNIVERSITY   (Thailand)

^h UNIVERSITY OF OXFORD   (United Kingdom)

ⁱ JAMIA MILLIA ISLAMIA CENTRAL UNIVERSITY   (India)

^j WORLD HEALTH ORGANIZATION   (Switzerland)

more..

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME RNA; MICROSATELLITE DNA; PROTOZOAL DNA; PROTOZOAL RNA; RIBOSOME DNA; RNA 18S;

ALLELE; ARTICLE; CHROMOSOME; COLOMBIA; GENE AMPLIFICATION; GENE FREQUENCY; GENETIC ANALYSIS; GENETIC POLYMORPHISM; GENETIC VARIABILITY; GENOME; GEOGRAPHIC DISTRIBUTION; INDIA; NICARAGUA; NONHUMAN; PANAMA; PHENOTYPE; PHYLOGENY; PLASMODIUM VIVAX; STRAIN DIFFERENCE; TANDEM REPEAT POLYMORPHISM; THAILAND; VIET NAM; CLASSIFICATION; DNA FINGERPRINTING; GENETICS; HUMAN; ISOLATION AND PURIFICATION; RNA GENE; TANDEM REPEAT;

DNA FINGERPRINTING; DNA, PROTOZOAN; DNA, RIBOSOMAL; GENES, RRNA; HUMANS; MICROSATELLITE REPEATS; PHYLOGENY; PLASMODIUM VIVAX; POLYMORPHISM, GENETIC; RNA, PROTOZOAN; RNA, RIBOSOMAL, 18S; TANDEM REPEAT SEQUENCES;

EID: 83655196874     PISSN: None     EISSN: 14752875     Source Type: Journal    
DOI: 10.1186/1475-2875-10-374     Document Type: Article

References (34)

1. WHO, Annual Report Geneva: World Health Organization 2008
2. Severe Plasmodium vivax malaria exhibits marked inflammatory imbalance. Andrade BB, Reis-Filho A, Souza-Neto SM, Clarencio J, Camargo LM, Barral A, Barral-Netto M, Malar J 2010 9 13
3. Severe Plasmodium vivax malaria: a report on serial cases from Bikaner in northwestern India. Kochar DK, Das A, Kochar SK, Saxena V, Sirohi P, Garg S, Kochar A, Khatri MP, Gupta V, Am J Trop Med Hyg 2009 80 194 198
4. Plasmodium vivax malaria. Kochar DK, Saxena V, Singh N, Kochar SK, Kumar SV, Das A, Emerg Infect Dis 2005 11 132 134 (Pubitemid 40093368)
5. Plasmodium vivax and mixed infections are associated with severe malaria in children: a prospective cohort study from Papua New Guinea. Genton B, D'Acremont V, Rare L, Baea K, Reeder JC, Alpers MP, Muller I, PLoS Med 2008 5 127
6. Severe vivax malaria: newly recognised or rediscovered. Rogerson SJ, Carter R, PLoS Med 2008 5 136
7. Multidrug-resistant Plasmodium vivax associated with severe and fatal malaria: a prospective study in Papua, Indonesia. Tjitra E, Anstey NM, Sugiarto P, Warikar N, Kenangalem E, Karyana M, Lampah DA, Price RN, PLoS Med 2008 5 128
8. Burden of malaria in India: retrospective and prospective view. Kumar A, Valecha N, Jain T, Dash AP, Am J Trop Med Hyg 2007 77 69 78
9. Microsatellite markers reveal a spectrum of population structures in the malaria parasite Plasmodium falciparum. Anderson TJ, Haubold B, Williams JT, Estrada-Franco JG, Richardson L, Mollinedo R, Bockarie M, Mokili J, Mharakurwa S, French N, Whitworth J, Velez ID, Brockman AH, Nosten F, Ferreira MU, Day KP, Mol Biol Evol 2000 17 1467 1482
10. The origins and spread of antimalarial drug resistance: lessons for policy makers. Anderson TJ, Roper C, Acta Trop 2005 94 269 280 (Pubitemid 40720332)
11. Twelve microsatellite markers for characterization of Plasmodium falciparum from finger-prick blood samples. Anderson TJ, Su XZ, Bockarie M, Lagog M, Day KP, Parasitology 1999 119 Pt 2 113 125 (Pubitemid 29381128)
12. Contrasting genetic structure in Plasmodium vivax populations from Asia and South America. Imwong M, Nair S, Pukrittayakamee S, Sudimack D, Williams JT, Mayxay M, Newton PN, Kim JR, Nandy A, Osorio L, Carlton JM, White NJ, Day NP, Anderson TJ, Int J Parasitol 2007 37 1013 1022 (Pubitemid 46887595)
13. Plasmodium vivax synonymous substitution frequencies, evolution and population structure deduced from diversity in AMA 1 and MSP 1 genes. Figtree M, Pasay CJ, Slade R, Cheng Q, Cloonan N, Walker J, Saul A, Mol Biochem Parasitol 2000 108 53 66 (Pubitemid 30236315)
14. Extensive microsatellite diversity in the human malaria parasite Plasmodium vivax. Karunaweera ND, Ferreira MU, Munasinghe A, Barnwell JW, Collins WE, King CL, Kawamoto F, Hartl DL, Wirth DF, Gene 2008 410 105 112
15. Geographic subdivision of the range of the malaria parasite Plasmodium vivax. Li J, Collins WE, Wirtz RA, Rathore D, Lal A, McCutchan TF, Emerg Infect Dis 2001 7 35 42 (Pubitemid 32173331)
16. Comparative genomics of the neglected human malaria parasite Plasmodium vivax. Carlton JM, Adams JH, Silva JC, Bidwell SL, Lorenzi H, Caler E, Crabtree J, Angiuoli SV, Merino EF, Amedeo P, Cheng Q, Coulson RM, Crabb BS, Del Portillo HA, Essien K, Feldblyum TV, Fernandez-Becerra C, Gilson PR, Gueye AH, Guo X, Kang'a S, Kooij TW, Korsinczky M, Meyer EV, Nene V, Paulsen I, White O, Ralph SA, Ren Q, Sargeant TJ, Salzberg SL, Stoeckert CJ, Sullivan SA, Yamamoto MM, Hoffman SL, Wortman JR, Gardner MJ, Galinski MR, Barnwell JW, Fraser-Liggett CM, Nature 2008 455 757 763
17. Relapses of Plasmodium vivax infection usually result from activation of heterologous hypnozoites. Imwong M, Snounou G, Pukrittayakamee S, Tanomsing N, Kim JR, Nandy A, Guthmann JP, Nosten F, Carlton J, Looareesuwan S, Nair S, Sudimack D, Day NP, Anderson TJ, White NJ, J Infect Dis 2007 195 927 933 (Pubitemid 46452096)
18. Microsatellite variation, repeat array length, and population history of Plasmodium vivax. Imwong M, Sudimack D, Pukrittayakamee S, Osorio L, Carlton JM, Day NP, White NJ, Anderson TJ, Mol Biol Evol 2006 23 1016 1018 (Pubitemid 43726066)
19. Local adaptation and vector-mediated population structure in Plasmodium vivax malaria. Joy DA, Gonzalez-Ceron L, Carlton JM, Gueye A, Fay M, McCutchan TF, Su XZ, Mol Biol Evol 2008 25 1245 1252
20. Single-nucleotide polymorphisms and genome diversity in Plasmodium vivax. Feng X, Carlton JM, Joy DA, Mu J, Furuya T, Suh BB, Wang Y, Barnwell JW, Su XZ, Proc Natl Acad Sci USA 2003 100 8502 8507 (Pubitemid 36842574)
21. Plasmodium vivax in India. Joshi H, Prajapati SK, Verma A, Kang'a S, Carlton JM, Trends Parasitol 2008 24 228 235
22. Tandem repeats finder: a program to analyze DNA sequences. Benson G, Nucleic Acids Res 1999 27 573 580 (Pubitemid 29210025)
23. Polymorphism at the merozoite surface protein-3alpha locus of Plasmodium vivax: global and local diversity. Bruce MC, Galinski MR, Barnwell JW, Snounou G, Day KP, Am J Trop Med Hyg 1999 61 518 525 (Pubitemid 29506329)
24. Microsatellite analyser (MSA): a platform independent analysis tool for large microsatellite data sets. Dieringer D, Schlötterer C, Molecular Ecology Notes 2003 3 168 169
25. MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Kumar S, Nei M, Dudley J, Tamura K, Brief Bioinform 2008 9 299 306 (Pubitemid 351890826)
26. MEGA: Molecular Evolutionary Genetics Analysis software for microcomputers. Kumar S, Tamura K, Nei M, Comput Appl Biosci 1994 10 189 191 (Pubitemid 24125441)
27. Identification of a polymorphic Plasmodium vivax microsatellite marker. Gomez JC, McNamara DT, Bockarie MJ, Baird JK, Carlton JM, Zimmerman PA, Am J Trop Med Hyg 2003 69 377 379 (Pubitemid 38248271)
28. Meager genetic variability of the human malaria agent Plasmodium vivax. Leclerc MC, Durand P, Gauthier C, Patot S, Billotte N, Menegon M, Severini C, Ayala FJ, Renaud F, Proc Natl Acad Sci USA 2004 101 14455 14460 (Pubitemid 39346770)
29. Genetic structure of Plasmodium vivax isolates in India. Joshi H, Subbarao SK, Adak T, Nanda N, Ghosh SK, Carter R, Sharma VP, Trans R Soc Trop Med Hyg 1997 91 231 235 (Pubitemid 27197304)
30. Markers for population genetic analysis of human plasmodia species, P. falciparum and P. vivax. Joshi H, J Vector Borne Dis 2003 40 78 83 (Pubitemid 38419858)
31. Plasmodium vivax: enzyme polymorphism in isolates of Indian origin. Joshi H, Subbarao SK, Raghavendra K, Sharma VP, Trans R Soc Trop Med Hyg 1989 83 179 181 (Pubitemid 19265557)
32. Antigenic repertoire of Plasmodium vivax transmission-blocking vaccine candidates from the Indian subcontinent. Prajapati SK, Joshi H, Dua VK, Malar J 2011 10 111
33. Plasmodium vivax merozoite surface protein-3 alpha: a high-resolution marker for genetic diversity studies. Prajapati SK, Joshi H, Valecha N, J Vector Borne Dis 2010 47 85 90
34. Plasmodium vivax: sequence polymorphism and effect of natural selection at apical membrane antigen 1 (PvAMA1) among Indian population. Thakur A, Alam MT, Bora H, Kaur P, Sharma YD, Gene 2008 419 35 42