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Volumn 77, Issue 1, 2012, Pages 67-70

Low genotyping error rates in non-invasively collected samples from roe deer of the Bavarian Forest National Park

Author keywords

Capreolus capreolus; D Loop; Faeces; Hair; Microsatellite genotypes

Indexed keywords

ALLELE; DEER; ERROR ANALYSIS; FECES; GENETIC ANALYSIS; GENETIC MARKER; GENETIC STRUCTURE; GENOTYPE; HAIR; POLYMERASE CHAIN REACTION; SAMPLING; WILD POPULATION;

EID: 83555166255     PISSN: 16165047     EISSN: 16181476     Source Type: Journal    
DOI: 10.1016/j.mambio.2011.05.003     Document Type: Article
Times cited : (5)

References (33)
  • 1
    • 68949112082 scopus 로고    scopus 로고
    • Advancing ecological understandings through technological transformations in noninvasive genetics
    • Beja-Pereira A., Oliveira R., Alves P.C., Schwartz M.K. Advancing ecological understandings through technological transformations in noninvasive genetics. Mol. Ecol. Resources 2009, 9:1279-1301.
    • (2009) Mol. Ecol. Resources , vol.9 , pp. 1279-1301
    • Beja-Pereira, A.1    Oliveira, R.2    Alves, P.C.3    Schwartz, M.K.4
  • 3
    • 1542502880 scopus 로고    scopus 로고
    • Captive roe deer (Capreolus capreolus) select for low amounts of tannic acid but not quebracho: fluctuation of preferences and potential benefits Comp
    • Clauss M., Lason K., Gehrke J., Lechner-Doll M., Fickel J., Grune T., Streich W.J. Captive roe deer (Capreolus capreolus) select for low amounts of tannic acid but not quebracho: fluctuation of preferences and potential benefits Comp. Biochem. Physiol. B 2003, 136:369-382.
    • (2003) Biochem. Physiol. B , vol.136 , pp. 369-382
    • Clauss, M.1    Lason, K.2    Gehrke, J.3    Lechner-Doll, M.4    Fickel, J.5    Grune, T.6    Streich, W.J.7
  • 4
    • 0037630871 scopus 로고    scopus 로고
    • Population size estimates in Yellowstone wolves with error-prone noninvasive microsatellite genotypes
    • Creel S., Spong G., Sands J.L., Rotella J., Zeigle J., Joe L., Murphy K.M., Smith D. Population size estimates in Yellowstone wolves with error-prone noninvasive microsatellite genotypes. Mol. Ecol. 2003, 12:2003-2009.
    • (2003) Mol. Ecol. , vol.12 , pp. 2003-2009
    • Creel, S.1    Spong, G.2    Sands, J.L.3    Rotella, J.4    Zeigle, J.5    Joe, L.6    Murphy, K.M.7    Smith, D.8
  • 6
    • 0036278761 scopus 로고    scopus 로고
    • On the origin of faeces: morphological versus molecular methods for surveying rare carnicores from their scats
    • Davison A., Birks J.D.S., Brookes R.C., Braithwaite T.C., Messenger J.E. On the origin of faeces: morphological versus molecular methods for surveying rare carnicores from their scats. J. Zool. 2002, 257:141-143.
    • (2002) J. Zool. , vol.257 , pp. 141-143
    • Davison, A.1    Birks, J.D.S.2    Brookes, R.C.3    Braithwaite, T.C.4    Messenger, J.E.5
  • 7
    • 33644554176 scopus 로고    scopus 로고
    • A methodological approach for non-invasive sampling for population size estimates in wild boars (Sus scrofa)
    • Fickel J., Hohmann U. A methodological approach for non-invasive sampling for population size estimates in wild boars (Sus scrofa). Eur. J. Wildl. Res. 2006, 52:28-33.
    • (2006) Eur. J. Wildl. Res. , vol.52 , pp. 28-33
    • Fickel, J.1    Hohmann, U.2
  • 8
    • 0032910183 scopus 로고    scopus 로고
    • A novel method to evaluate the relative tannin-binding capacities of salivary proteins
    • Fickel J., Pitra C., Joest B.A., Hofmann R.R. A novel method to evaluate the relative tannin-binding capacities of salivary proteins. Comp. Biochem. Physiol. C 1998, 122:225-229.
    • (1998) Comp. Biochem. Physiol. C , vol.122 , pp. 225-229
    • Fickel, J.1    Pitra, C.2    Joest, B.A.3    Hofmann, R.R.4
  • 9
    • 0033926869 scopus 로고    scopus 로고
    • Microsatellite markers for the European Roe deer (Capreolus capreolus)
    • Fickel J., Reinsch A. Microsatellite markers for the European Roe deer (Capreolus capreolus). Mol. Ecol. 2000, 9:994-995.
    • (2000) Mol. Ecol. , vol.9 , pp. 994-995
    • Fickel, J.1    Reinsch, A.2
  • 10
    • 35448938313 scopus 로고    scopus 로고
    • Semen cryopreservation and the conservation of endangered species
    • Fickel J., Wagener A., Ludwig A. Semen cryopreservation and the conservation of endangered species. Eur. J. Wildl. Res. 2007, 53:81-89.
    • (2007) Eur. J. Wildl. Res. , vol.53 , pp. 81-89
    • Fickel, J.1    Wagener, A.2    Ludwig, A.3
  • 11
    • 0031239254 scopus 로고    scopus 로고
    • Microsatellite scoring errors associated with noninvasive genotyping based on nuclear DNA amplified from shed hair
    • Gagneux P., Boesch C., Woodruff D.S. Microsatellite scoring errors associated with noninvasive genotyping based on nuclear DNA amplified from shed hair. Mol. Ecol. 1997, 6:861-868.
    • (1997) Mol. Ecol. , vol.6 , pp. 861-868
    • Gagneux, P.1    Boesch, C.2    Woodruff, D.S.3
  • 12
    • 0003710305 scopus 로고
    • Contribution a la dynamique des populations de grands mammifères. L'exemple du chevreuil (Capreolus capreolus)
    • PhD thesis, University of Lyon, Lyon, France.
    • Gaillard, J.M. 1988. Contribution a la dynamique des populations de grands mammifères. L'exemple du chevreuil (Capreolus capreolus). PhD thesis, University of Lyon, Lyon, France.
    • (1988)
    • Gaillard, J.M.1
  • 13
    • 0032170154 scopus 로고    scopus 로고
    • Plucked hair samples as a source of DNA: reliability of dinucleotide microsatellite genotyping
    • Goossens B., Waits L.P., Taberlet P. Plucked hair samples as a source of DNA: reliability of dinucleotide microsatellite genotyping. Mol. Ecol. 1998, 7:1237-1241.
    • (1998) Mol. Ecol. , vol.7 , pp. 1237-1241
    • Goossens, B.1    Waits, L.P.2    Taberlet, P.3
  • 14
    • 33750950262 scopus 로고    scopus 로고
    • Maximum likelihood estimation of the frequency of null alleles at microsatellite loci
    • Kalinowski S.T., Taper M.L. Maximum likelihood estimation of the frequency of null alleles at microsatellite loci. Cons. Genet. 2006, 7:991-995.
    • (2006) Cons. Genet. , vol.7 , pp. 991-995
    • Kalinowski, S.T.1    Taper, M.L.2
  • 15
    • 33749990100 scopus 로고    scopus 로고
    • Structure of an otter population in Germany - results of DNA and hormone analyses from faecal samples
    • Kalz B., Jewgenow K., Fickel J. Structure of an otter population in Germany - results of DNA and hormone analyses from faecal samples. Mamm. Biol 2006, 71:321-335.
    • (2006) Mamm. Biol , vol.71 , pp. 321-335
    • Kalz, B.1    Jewgenow, K.2    Fickel, J.3
  • 17
    • 0032077236 scopus 로고    scopus 로고
    • Statistical confi{ligature}dence for likelihood-based paternity inference in natural populations
    • Marshall T.C., Slate J., Kruuk L.E.B., Pemberton J.M. Statistical confi{ligature}dence for likelihood-based paternity inference in natural populations. Mol. Ecol. 1998, 7:639-655.
    • (1998) Mol. Ecol. , vol.7 , pp. 639-655
    • Marshall, T.C.1    Slate, J.2    Kruuk, L.E.B.3    Pemberton, J.M.4
  • 18
    • 0036160390 scopus 로고    scopus 로고
    • Assessing allelic dropout and genotype reliability using maximum likelihood
    • Miller C.R., Joyce P., Waits L.P. Assessing allelic dropout and genotype reliability using maximum likelihood. Genetics 2002, 160:357-366.
    • (2002) Genetics , vol.160 , pp. 357-366
    • Miller, C.R.1    Joyce, P.2    Waits, L.P.3
  • 20
    • 0008948517 scopus 로고
    • Some aspects of population structure and longevity of field roe deer
    • Pielowski Z. Some aspects of population structure and longevity of field roe deer. Acta Theriologica 1984, 29:17-33.
    • (1984) Acta Theriologica , vol.29 , pp. 17-33
    • Pielowski, Z.1
  • 21
    • 0000625869 scopus 로고
    • Analyzing tables of statistical tests
    • Rice W.R. Analyzing tables of statistical tests. Evolution 1989, 43:223-225.
    • (1989) Evolution , vol.43 , pp. 223-225
    • Rice, W.R.1
  • 22
    • 0032401963 scopus 로고    scopus 로고
    • Microsatellites in reindeer, Rangifer tarandus, and their use in other cervids
    • Røed K.H., Midthjell L. Microsatellites in reindeer, Rangifer tarandus, and their use in other cervids. Mol. Ecol. 1998, 7:1773-1776.
    • (1998) Mol. Ecol. , vol.7 , pp. 1773-1776
    • Røed, K.H.1    Midthjell, L.2
  • 23
    • 36849080837 scopus 로고    scopus 로고
    • GENEPOP'007: a complete re-implementation of the GENEPOP software for Windows and Linux
    • Rousset F. GENEPOP'007: a complete re-implementation of the GENEPOP software for Windows and Linux. Mol. Ecol. Resources 2008, 8:103-106.
    • (2008) Mol. Ecol. Resources , vol.8 , pp. 103-106
    • Rousset, F.1
  • 24
    • 77649300624 scopus 로고    scopus 로고
    • Advancement to hair-sampling surveys of a medium-sized mammal: DNA-based individual identification and population estimation of a rare Australian marsupial, the spotted-tailed quoll (Dasyurus maculatus)
    • Ruibal M., Peakall R., Claridge A., Murray A., Firestone K. Advancement to hair-sampling surveys of a medium-sized mammal: DNA-based individual identification and population estimation of a rare Australian marsupial, the spotted-tailed quoll (Dasyurus maculatus). Wildl. Res. 2010, 37:27-38.
    • (2010) Wildl. Res. , vol.37 , pp. 27-38
    • Ruibal, M.1    Peakall, R.2    Claridge, A.3    Murray, A.4    Firestone, K.5
  • 25
    • 3042780412 scopus 로고    scopus 로고
    • Impact of roe deer Capreolus capreolus browsing on understorey vegetation in small farm woodlands
    • Sage R.B., Hollins K., Gregory C.L., Woodburn M.I.A., Carroll J.P. Impact of roe deer Capreolus capreolus browsing on understorey vegetation in small farm woodlands. Wildl. Biol. 2004, 10:115-120.
    • (2004) Wildl. Biol. , vol.10 , pp. 115-120
    • Sage, R.B.1    Hollins, K.2    Gregory, C.L.3    Woodburn, M.I.A.4    Carroll, J.P.5
  • 26
    • 0001654939 scopus 로고
    • The roe deer (Capreolus capreolus) population at Kalø and the factors regulating its size
    • Strandgaard H. The roe deer (Capreolus capreolus) population at Kalø and the factors regulating its size. Danish Rev. Game Biol. 1972, 7:1-205.
    • (1972) Danish Rev. Game Biol. , vol.7 , pp. 1-205
    • Strandgaard, H.1
  • 27
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • Tamura K., Dudley J., Nei M., Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 28
    • 0029285297 scopus 로고
    • Dinucleotide repeat polymorphism at the bovine HAUT1 and HAUT14 loci
    • Thieven U., Harlizius B., Simon D. Dinucleotide repeat polymorphism at the bovine HAUT1 and HAUT14 loci. Anim. Genet. 1995, 26:123.
    • (1995) Anim. Genet. , vol.26 , pp. 123
    • Thieven, U.1    Harlizius, B.2    Simon, D.3
  • 29
    • 0031574072 scopus 로고    scopus 로고
    • The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl. Acids Res. 1997, 24:4876-4882.
    • (1997) Nucl. Acids Res. , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 30
    • 4344606590 scopus 로고    scopus 로고
    • Micro-Checker: software for identifying and correcting genotyping errors in microsatellite data
    • van Ooosterhout C., Hutchinson W.F., Wills D.P.M., Shipley P. Micro-Checker: software for identifying and correcting genotyping errors in microsatellite data. Mol. Ecol. Notes 2004, 4:535-538.
    • (2004) Mol. Ecol. Notes , vol.4 , pp. 535-538
    • van Ooosterhout, C.1    Hutchinson, W.F.2    Wills, D.P.M.3    Shipley, P.4
  • 31
    • 0035993676 scopus 로고    scopus 로고
    • The genetic structure of natural and reintroduced roe deer (Capreolus capreolus) populations in the Alps and central Italy, with reference to the mitochondrial DNA phylogeography of Europe
    • Vernesi C., Pecchioli E., Caramelli D., Tiedemann R., Randi E., Bertorelle G. The genetic structure of natural and reintroduced roe deer (Capreolus capreolus) populations in the Alps and central Italy, with reference to the mitochondrial DNA phylogeography of Europe. Mol. Ecol. 2002, 11:1285-1297.
    • (2002) Mol. Ecol. , vol.11 , pp. 1285-1297
    • Vernesi, C.1    Pecchioli, E.2    Caramelli, D.3    Tiedemann, R.4    Randi, E.5    Bertorelle, G.6
  • 32
    • 0000938330 scopus 로고    scopus 로고
    • Phylogeography of the European roe deer Capreolus capreolus as revealed by sequence analysis of the mitochondrial control region
    • Wiehler J., Tiedemann R. Phylogeography of the European roe deer Capreolus capreolus as revealed by sequence analysis of the mitochondrial control region. Acta Theriol. Suppl. 1998, 5:187-197.
    • (1998) Acta Theriol. Suppl. , vol.5 , pp. 187-197
    • Wiehler, J.1    Tiedemann, R.2
  • 33
    • 79952832813 scopus 로고    scopus 로고
    • Ungulates and their management in Germany
    • Cambridge University Press, M. Apollonio, R. Andersen, R. Putman (Eds.)
    • Wotschikowsky U. Ungulates and their management in Germany. European Ungulates and their Management in the 21st Century 2010, 201-222. Cambridge University Press. M. Apollonio, R. Andersen, R. Putman (Eds.).
    • (2010) European Ungulates and their Management in the 21st Century , pp. 201-222
    • Wotschikowsky, U.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.