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Volumn 12, Issue , 2011, Pages

Structural characterization of helitrons and their stepwise capturing of gene fragments in the maize genome

Author keywords

[No Author keywords available]

Indexed keywords

HELICASE; REPLICATION FACTOR A; SINGLE STRANDED DNA; TRANSPOSASE;

EID: 83455203575     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-12-609     Document Type: Article
Times cited : (13)

References (33)
  • 1
    • 21644437476 scopus 로고    scopus 로고
    • Mechanisms of recent genome size variation in flowering plants
    • 10.1093/aob/mci008, 15596462
    • Bennetzen JL, Ma J, Devos KM. Mechanisms of recent genome size variation in flowering plants. Ann Bot 2005, 95(1):127-132. 10.1093/aob/mci008, 15596462.
    • (2005) Ann Bot , vol.95 , Issue.1 , pp. 127-132
    • Bennetzen, J.L.1    Ma, J.2    Devos, K.M.3
  • 2
    • 0035105221 scopus 로고    scopus 로고
    • Perspective: transposable elements, parasitic DNA, and genome evolution
    • Kidwell MG, Lisch DR. Perspective: transposable elements, parasitic DNA, and genome evolution. Evolution 2001, 55(1):1-24.
    • (2001) Evolution , vol.55 , Issue.1 , pp. 1-24
    • Kidwell, M.G.1    Lisch, D.R.2
  • 3
    • 0035902449 scopus 로고    scopus 로고
    • Rolling-circle transposons in eukaryotes
    • 10.1073/pnas.151269298, 37501, 11447285
    • Kapitonov VV, Jurka J. Rolling-circle transposons in eukaryotes. Proc Natl Acad Sci USA 2001, 98(15):8714-8719. 10.1073/pnas.151269298, 37501, 11447285.
    • (2001) Proc Natl Acad Sci USA , vol.98 , Issue.15 , pp. 8714-8719
    • Kapitonov, V.V.1    Jurka, J.2
  • 4
    • 34848876954 scopus 로고    scopus 로고
    • Helitrons on a roll: eukaryotic rolling-circle transposons
    • 10.1016/j.tig.2007.08.004, 17850916
    • Kapitonov VV, Jurka J. Helitrons on a roll: eukaryotic rolling-circle transposons. Trends Genet 2007, 23(10):521-529. 10.1016/j.tig.2007.08.004, 17850916.
    • (2007) Trends Genet , vol.23 , Issue.10 , pp. 521-529
    • Kapitonov, V.V.1    Jurka, J.2
  • 5
    • 33847165780 scopus 로고    scopus 로고
    • Spontaneous mutations caused by a Helitron transposon, Hel-It1, in morning glory, Ipomoea tricolor
    • 10.1111/j.1365-313X.2006.03007.x, 17257169
    • Choi JD, Hoshino A, Park KI, Park IS, Iida S. Spontaneous mutations caused by a Helitron transposon, Hel-It1, in morning glory, Ipomoea tricolor. Plant J 2007, 49(5):924-934. 10.1111/j.1365-313X.2006.03007.x, 17257169.
    • (2007) Plant J , vol.49 , Issue.5 , pp. 924-934
    • Choi, J.D.1    Hoshino, A.2    Park, K.I.3    Park, I.S.4    Iida, S.5
  • 6
    • 0037975554 scopus 로고    scopus 로고
    • Molecular paleontology of transposable elements in the Drosophila melanogaster genome
    • 10.1073/pnas.0732024100, 164487, 12743378
    • Kapitonov VV, Jurka J. Molecular paleontology of transposable elements in the Drosophila melanogaster genome. Proc Natl Acad Sci USA 2003, 100(11):6569-6574. 10.1073/pnas.0732024100, 164487, 12743378.
    • (2003) Proc Natl Acad Sci USA , vol.100 , Issue.11 , pp. 6569-6574
    • Kapitonov, V.V.1    Jurka, J.2
  • 7
    • 0037327353 scopus 로고    scopus 로고
    • The maize genome contains a helitron insertion
    • 10.1105/tpc.008375, 141208, 12566579
    • Lal SK, Giroux MJ, Brendel V, Vallejos CE, Hannah LC. The maize genome contains a helitron insertion. Plant Cell 2003, 15(2):381-391. 10.1105/tpc.008375, 141208, 12566579.
    • (2003) Plant Cell , vol.15 , Issue.2 , pp. 381-391
    • Lal, S.K.1    Giroux, M.J.2    Brendel, V.3    Vallejos, C.E.4    Hannah, L.C.5
  • 8
    • 67650800330 scopus 로고    scopus 로고
    • Fragments of the key flowering gene GIGANTEA are associated with helitron-type sequences in the Pooideae grass Lolium perenne
    • 10.1186/1471-2229-9-70, 2702305, 19500419
    • Langdon T, Thomas A, Huang L, Farrar K, King J, Armstead I. Fragments of the key flowering gene GIGANTEA are associated with helitron-type sequences in the Pooideae grass Lolium perenne. BMC Plant Biol 2009, 9:70. 10.1186/1471-2229-9-70, 2702305, 19500419.
    • (2009) BMC Plant Biol , vol.9 , pp. 70
    • Langdon, T.1    Thomas, A.2    Huang, L.3    Farrar, K.4    King, J.5    Armstead, I.6
  • 9
    • 0142026172 scopus 로고    scopus 로고
    • Vertebrate helentrons and other novel Helitrons
    • Poulter RT, Goodwin TJ, Butler MI. Vertebrate helentrons and other novel Helitrons. Gene 2003, 313:201-212.
    • (2003) Gene , vol.313 , pp. 201-212
    • Poulter, R.T.1    Goodwin, T.J.2    Butler, M.I.3
  • 10
    • 33846931279 scopus 로고    scopus 로고
    • Massive amplification of rolling-circle transposons in the lineage of the bat Myotis lucifugus
    • 10.1073/pnas.0609601104, 1794268, 17261799
    • Pritham EJ, Feschotte C. Massive amplification of rolling-circle transposons in the lineage of the bat Myotis lucifugus. Proc Natl Acad Sci USA 2007, 104(6):1895-1900. 10.1073/pnas.0609601104, 1794268, 17261799.
    • (2007) Proc Natl Acad Sci USA , vol.104 , Issue.6 , pp. 1895-1900
    • Pritham, E.J.1    Feschotte, C.2
  • 11
    • 69149101693 scopus 로고    scopus 로고
    • Structure-based discovery and description of plant and animal Helitrons
    • 10.1073/pnas.0905563106, 2722332, 19622734
    • Yang L, Bennetzen JL. Structure-based discovery and description of plant and animal Helitrons. Proc Natl Acad Sci USA 2009, 106(31):12832-12837. 10.1073/pnas.0905563106, 2722332, 19622734.
    • (2009) Proc Natl Acad Sci USA , vol.106 , Issue.31 , pp. 12832-12837
    • Yang, L.1    Bennetzen, J.L.2
  • 12
    • 33645866187 scopus 로고    scopus 로고
    • Helitron Transposons on the Sex Chromosomes of the Platyfish Xiphophorus maculatus and Their Evolution in Animal Genomes
    • 10.1089/zeb.2006.3.39, 18248245
    • Zhou Q, Froschauer A, Schultheis C, Schmidt C, Bienert GP, Wenning M, Dettai A, Volff JN. Helitron Transposons on the Sex Chromosomes of the Platyfish Xiphophorus maculatus and Their Evolution in Animal Genomes. Zebrafish 2006, 3(1):39-52. 10.1089/zeb.2006.3.39, 18248245.
    • (2006) Zebrafish , vol.3 , Issue.1 , pp. 39-52
    • Zhou, Q.1    Froschauer, A.2    Schultheis, C.3    Schmidt, C.4    Bienert, G.P.5    Wenning, M.6    Dettai, A.7    Volff, J.N.8
  • 13
    • 73949127791 scopus 로고    scopus 로고
    • The polychromatic Helitron landscape of the maize genome
    • 2785267, 19926866
    • Du C, Fefelova N, Caronna J, He L, Dooner HK. The polychromatic Helitron landscape of the maize genome. Proc Natl Acad Sci USA 2009, 106(47):19916-19921. 2785267, 19926866.
    • (2009) Proc Natl Acad Sci USA , vol.106 , Issue.47 , pp. 19916-19921
    • Du, C.1    Fefelova, N.2    Caronna, J.3    He, L.4    Dooner, H.K.5
  • 14
    • 72849134447 scopus 로고    scopus 로고
    • Distribution, diversity, evolution, and survival of Helitrons in the maize genome
    • 2785268, 19926865
    • Yang L, Bennetzen JL. Distribution, diversity, evolution, and survival of Helitrons in the maize genome. Proc Natl Acad Sci USA 2009, 106(47):19922-19927. 2785268, 19926865.
    • (2009) Proc Natl Acad Sci USA , vol.106 , Issue.47 , pp. 19922-19927
    • Yang, L.1    Bennetzen, J.L.2
  • 15
    • 25144488228 scopus 로고    scopus 로고
    • Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize
    • 10.1038/ng1615, 16056225
    • Morgante M, Brunner S, Pea G, Fengler K, Zuccolo A, Rafalski A. Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize. Nat Genet 2005, 37(9):997-1002. 10.1038/ng1615, 16056225.
    • (2005) Nat Genet , vol.37 , Issue.9 , pp. 997-1002
    • Morgante, M.1    Brunner, S.2    Pea, G.3    Fengler, K.4    Zuccolo, A.5    Rafalski, A.6
  • 16
    • 66649090313 scopus 로고    scopus 로고
    • Haplotype structure strongly affects recombination in a maize genetic interval polymorphic for Helitron and retrotransposon insertions
    • 10.1073/pnas.0902972106, 2688972, 19416860
    • He L, Dooner HK. Haplotype structure strongly affects recombination in a maize genetic interval polymorphic for Helitron and retrotransposon insertions. Proc Natl Acad Sci USA 2009, 106(21):8410-8416. 10.1073/pnas.0902972106, 2688972, 19416860.
    • (2009) Proc Natl Acad Sci USA , vol.106 , Issue.21 , pp. 8410-8416
    • He, L.1    Dooner, H.K.2
  • 17
    • 21144454436 scopus 로고    scopus 로고
    • Gene movement by Helitron transposons contributes to the haplotype variability of maize
    • 10.1073/pnas.0502923102, 1157042, 15951422
    • Lai J, Li Y, Messing J, Dooner HK. Gene movement by Helitron transposons contributes to the haplotype variability of maize. Proc Natl Acad Sci USA 2005, 102(25):9068-9073. 10.1073/pnas.0502923102, 1157042, 15951422.
    • (2005) Proc Natl Acad Sci USA , vol.102 , Issue.25 , pp. 9068-9073
    • Lai, J.1    Li, Y.2    Messing, J.3    Dooner, H.K.4
  • 18
    • 35848941492 scopus 로고    scopus 로고
    • Population and evolutionary dynamics of Helitron transposable elements in Arabidopsis thaliana
    • 10.1093/molbev/msm197, 17890239
    • Hollister JD, Gaut BS. Population and evolutionary dynamics of Helitron transposable elements in Arabidopsis thaliana. Mol Biol Evol 2007, 24(11):2515-2524. 10.1093/molbev/msm197, 17890239.
    • (2007) Mol Biol Evol , vol.24 , Issue.11 , pp. 2515-2524
    • Hollister, J.D.1    Gaut, B.S.2
  • 19
    • 55149109698 scopus 로고    scopus 로고
    • A comparative computational analysis of nonautonomous helitron elements between maize and rice
    • 10.1186/1471-2164-9-467, 2575219, 18842139
    • Sweredoski M, DeRose-Wilson L, Gaut BS. A comparative computational analysis of nonautonomous helitron elements between maize and rice. BMC Genomics 2008, 9:467. 10.1186/1471-2164-9-467, 2575219, 18842139.
    • (2008) BMC Genomics , vol.9 , pp. 467
    • Sweredoski, M.1    DeRose-Wilson, L.2    Gaut, B.S.3
  • 20
    • 42649139560 scopus 로고    scopus 로고
    • Helitron mediated amplification of cytochrome P450 monooxygenase gene in maize
    • 10.1007/s11103-008-9318-4, 18327644
    • Jameson N, Georgelis N, Fouladbash E, Martens S, Hannah LC, Lal S. Helitron mediated amplification of cytochrome P450 monooxygenase gene in maize. Plant Mol Biol 2008, 67(3):295-304. 10.1007/s11103-008-9318-4, 18327644.
    • (2008) Plant Mol Biol , vol.67 , Issue.3 , pp. 295-304
    • Jameson, N.1    Georgelis, N.2    Fouladbash, E.3    Martens, S.4    Hannah, L.C.5    Lal, S.6
  • 21
    • 33847275983 scopus 로고    scopus 로고
    • Maize haplotype with a helitron-amplified cytidine deaminase gene copy
    • 1657028, 17094807
    • Xu JH, Messing J. Maize haplotype with a helitron-amplified cytidine deaminase gene copy. BMC Genet 2006, 7:52. 1657028, 17094807.
    • (2006) BMC Genet , vol.7 , pp. 52
    • Xu, J.H.1    Messing, J.2
  • 22
    • 0026748738 scopus 로고
    • Conserved sequence motifs in the initiator proteins for rolling circle DNA replication encoded by diverse replicons from eubacteria, eucaryotes and archaebacteria
    • 10.1093/nar/20.13.3279, 312478, 1630899
    • Ilyina TV, Koonin EV. Conserved sequence motifs in the initiator proteins for rolling circle DNA replication encoded by diverse replicons from eubacteria, eucaryotes and archaebacteria. Nucleic Acids Res 1992, 20(13):3279-3285. 10.1093/nar/20.13.3279, 312478, 1630899.
    • (1992) Nucleic Acids Res , vol.20 , Issue.13 , pp. 3279-3285
    • Ilyina, T.V.1    Koonin, E.V.2
  • 24
    • 40549086282 scopus 로고    scopus 로고
    • Computational prediction and molecular confirmation of Helitron transposons in the maize genome
    • 10.1186/1471-2164-9-51, 2267711, 18226261
    • Du C, Caronna J, He L, Dooner HK. Computational prediction and molecular confirmation of Helitron transposons in the maize genome. BMC Genomics 2008, 9:51. 10.1186/1471-2164-9-51, 2267711, 18226261.
    • (2008) BMC Genomics , vol.9 , pp. 51
    • Du, C.1    Caronna, J.2    He, L.3    Dooner, H.K.4
  • 25
    • 27444432817 scopus 로고    scopus 로고
    • Origins, genetic organization and transcription of a family of non-autonomous helitron elements in maize
    • 10.1111/j.1365-313X.2005.02497.x, 16146520
    • Brunner S, Pea G, Rafalski A. Origins, genetic organization and transcription of a family of non-autonomous helitron elements in maize. Plant J 2005, 43(6):799-810. 10.1111/j.1365-313X.2005.02497.x, 16146520.
    • (2005) Plant J , vol.43 , Issue.6 , pp. 799-810
    • Brunner, S.1    Pea, G.2    Rafalski, A.3
  • 26
    • 17844406653 scopus 로고    scopus 로고
    • A novel class of Helitron-related transposable elements in maize contain portions of multiple pseudogenes
    • 10.1007/s11103-004-6636-z, 15821872
    • Gupta S, Gallavotti A, Stryker GA, Schmidt RJ, Lal SK. A novel class of Helitron-related transposable elements in maize contain portions of multiple pseudogenes. Plant Mol Biol 2005, 57(1):115-127. 10.1007/s11103-004-6636-z, 15821872.
    • (2005) Plant Mol Biol , vol.57 , Issue.1 , pp. 115-127
    • Gupta, S.1    Gallavotti, A.2    Stryker, G.A.3    Schmidt, R.J.4    Lal, S.K.5
  • 27
    • 33845215653 scopus 로고    scopus 로고
    • Remarkable variation in maize genome structure inferred from haplotype diversity at the bz locus
    • 10.1073/pnas.0603080103, 1693800, 17101975
    • Wang Q, Dooner HK. Remarkable variation in maize genome structure inferred from haplotype diversity at the bz locus. Proc Natl Acad Sci USA 2006, 103(47):17644-17649. 10.1073/pnas.0603080103, 1693800, 17101975.
    • (2006) Proc Natl Acad Sci USA , vol.103 , Issue.47 , pp. 17644-17649
    • Wang, Q.1    Dooner, H.K.2
  • 28
    • 73949103740 scopus 로고    scopus 로고
    • A cornucopia of Helitrons shapes the maize genome
    • 2785235, 19926864
    • Feschotte C, Pritham EJ. A cornucopia of Helitrons shapes the maize genome. Proc Natl Acad Sci USA 2009, 106(47):19747-19748. 2785235, 19926864.
    • (2009) Proc Natl Acad Sci USA , vol.106 , Issue.47 , pp. 19747-19748
    • Feschotte, C.1    Pritham, E.J.2
  • 29
    • 34748846304 scopus 로고    scopus 로고
    • Model-based identification of Helitrons results in a new classification of their families in Arabidopsis thaliana
    • 10.1016/j.gene.2007.06.030, 17889452
    • Tempel S, Nicolas J, El AA, Couee I. Model-based identification of Helitrons results in a new classification of their families in Arabidopsis thaliana. Gene 2007, 403(1-2):18-28. 10.1016/j.gene.2007.06.030, 17889452.
    • (2007) Gene , vol.403 , Issue.1-2 , pp. 18-28
    • Tempel, S.1    Nicolas, J.2    El, A.A.3    Couee, I.4
  • 30
    • 67849130525 scopus 로고    scopus 로고
    • Excision of Helitron transposons in maize
    • 10.1534/genetics.109.101527, 2674836, 19255366
    • Li Y, Dooner HK. Excision of Helitron transposons in maize. Genetics 2009, 182(1):399-402. 10.1534/genetics.109.101527, 2674836, 19255366.
    • (2009) Genetics , vol.182 , Issue.1 , pp. 399-402
    • Li, Y.1    Dooner, H.K.2
  • 32
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • 10.1093/molbev/msm092, 17488738
    • Tamura K, Dudley J, Nei M, Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 2007, 24(8):1596-1599. 10.1093/molbev/msm092, 17488738.
    • (2007) Mol Biol Evol , vol.24 , Issue.8 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 33
    • 0021695885 scopus 로고
    • Ribosomal DNA spacer-length polymorphisms in barley: mendelian inheritance, chromosomal location, and population dynamics
    • 10.1073/pnas.81.24.8014, 392284, 6096873
    • Saghai-Maroof MA, Soliman KM, Jorgensen RA, Allard RW. Ribosomal DNA spacer-length polymorphisms in barley: mendelian inheritance, chromosomal location, and population dynamics. Proc Natl Acad Sci USA 1984, 81(24):8014-8018. 10.1073/pnas.81.24.8014, 392284, 6096873.
    • (1984) Proc Natl Acad Sci USA , vol.81 , Issue.24 , pp. 8014-8018
    • Saghai-Maroof, M.A.1    Soliman, K.M.2    Jorgensen, R.A.3    Allard, R.W.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.