메뉴 건너뛰기




Volumn 53, Issue 1, 2012, Pages 74-82

Genotypic analysis of isolated peanut-nodulating rhizobial strains reveals differences among populations obtained from soils with different cropping histories

Author keywords

16S rRNA sequencing; Bradyrhizobim; ERIC PCR; Genetic diversity; Peanut cropping history; RFLP 16S rRNA

Indexed keywords

ARACHIS HYPOGAEA; BRADYRHIZOBIUM; CABRERA; ENTEROBACTERIACEAE; RHIZOBIACEAE;

EID: 83455171544     PISSN: 09291393     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.apsoil.2011.11.010     Document Type: Article
Times cited : (26)

References (50)
  • 2
    • 78249281344 scopus 로고    scopus 로고
    • Genotypic and phenotypic diversity of rhizobia isolated from Lathyrus japonicus indigenous to Japan
    • Aoki S., Kondo T., Prévost D., Nakata S., Kajita T., Ito M. Genotypic and phenotypic diversity of rhizobia isolated from Lathyrus japonicus indigenous to Japan. Syst. Appl. Microbiol. 2010, 33:383-397.
    • (2010) Syst. Appl. Microbiol. , vol.33 , pp. 383-397
    • Aoki, S.1    Kondo, T.2    Prévost, D.3    Nakata, S.4    Kajita, T.5    Ito, M.6
  • 3
    • 54449096586 scopus 로고    scopus 로고
    • Genetic diversity of native Bradyrhizobia isolated from soybeans (Glycine max L.) in different agricultural-ecological-climatic regions of India
    • Appunu C., N'Zoue A., Laguerre G. Genetic diversity of native Bradyrhizobia isolated from soybeans (Glycine max L.) in different agricultural-ecological-climatic regions of India. Appl. Environ. Microbiol. 2008, 74:5991-5996.
    • (2008) Appl. Environ. Microbiol. , vol.74 , pp. 5991-5996
    • Appunu, C.1    N'Zoue, A.2    Laguerre, G.3
  • 6
    • 37549005618 scopus 로고    scopus 로고
    • Competitiveness of a Bradyrhizobium sp. strain in soils containing indigenous rhizobia
    • Bogino P., Banchio E., Bonfiglio C., Giordano W. Competitiveness of a Bradyrhizobium sp. strain in soils containing indigenous rhizobia. Curr. Microbiol. 2008, 56:66-72.
    • (2008) Curr. Microbiol. , vol.56 , pp. 66-72
    • Bogino, P.1    Banchio, E.2    Bonfiglio, C.3    Giordano, W.4
  • 7
    • 77954282818 scopus 로고    scopus 로고
    • Molecular diversity of peanut-nodulating rhizobia in soils of Argentina
    • Bogino P., Banchio E., Giordano W. Molecular diversity of peanut-nodulating rhizobia in soils of Argentina. J. Basic Microbiol. 2010, 50:274-279.
    • (2010) J. Basic Microbiol. , vol.50 , pp. 274-279
    • Bogino, P.1    Banchio, E.2    Giordano, W.3
  • 8
    • 33744927717 scopus 로고    scopus 로고
    • Peanut (Arachis hypogaea) response to inoculation with Bradyrhizobium sp. in soils of Argentina
    • Bogino P., Banchio E., Rinaudi L., Cerioni G., Bonfiglio C., Giordano W. Peanut (Arachis hypogaea) response to inoculation with Bradyrhizobium sp. in soils of Argentina. Ann. Appl. Biol. 2006, 148:207-212.
    • (2006) Ann. Appl. Biol. , vol.148 , pp. 207-212
    • Bogino, P.1    Banchio, E.2    Rinaudi, L.3    Cerioni, G.4    Bonfiglio, C.5    Giordano, W.6
  • 10
    • 0030952624 scopus 로고    scopus 로고
    • Nodulation of groundnut by Bradyrhizobium: a simple infection process by crack entry
    • Boogerd F.C., van Rossum D. Nodulation of groundnut by Bradyrhizobium: a simple infection process by crack entry. FEMS Microbiol. Rev. 1997, 25:5-27.
    • (1997) FEMS Microbiol. Rev. , vol.25 , pp. 5-27
    • Boogerd, F.C.1    van Rossum, D.2
  • 12
    • 0026723774 scopus 로고
    • Use of repetitive (repetitive extragenic palindromic and enterobacterial repetitive intergeneric consensus) sequences and the polymerase chain reaction to fingerprint the genomes of Rhizobium meliloti isolates and other soil bacteria
    • de Bruijn F.J. Use of repetitive (repetitive extragenic palindromic and enterobacterial repetitive intergeneric consensus) sequences and the polymerase chain reaction to fingerprint the genomes of Rhizobium meliloti isolates and other soil bacteria. Appl. Environ. Microbiol. 1992, 58:2180-2187.
    • (1992) Appl. Environ. Microbiol. , vol.58 , pp. 2180-2187
    • de Bruijn, F.J.1
  • 13
    • 0041703174 scopus 로고    scopus 로고
    • Competitive abilities of common field isolates and a commercial strain of Rhizobium leguminosarum bv. trifolii for clover nodule occupancy
    • Denton M.D., Reeve W.G., Howieson J.G., Coventry D.R. Competitive abilities of common field isolates and a commercial strain of Rhizobium leguminosarum bv. trifolii for clover nodule occupancy. Soil Biol. Biochem. 2003, 35:1039-1048.
    • (2003) Soil Biol. Biochem. , vol.35 , pp. 1039-1048
    • Denton, M.D.1    Reeve, W.G.2    Howieson, J.G.3    Coventry, D.R.4
  • 15
    • 59949084793 scopus 로고    scopus 로고
    • Genetic diversity and host range of rhizobia nodulating Lotus tenuis in typical soils of the Salado river basin (Argentina)
    • Estrella M.J., Muñoz S., Soto M.J., Ruiz O., Sanjuán J. Genetic diversity and host range of rhizobia nodulating Lotus tenuis in typical soils of the Salado river basin (Argentina). Appl. Environ. Microbiol. 2009, 75:1088-1098.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 1088-1098
    • Estrella, M.J.1    Muñoz, S.2    Soto, M.J.3    Ruiz, O.4    Sanjuán, J.5
  • 17
    • 2942526836 scopus 로고    scopus 로고
    • Infection and invasion of roots by symbiotic, nitrogen-fixing rhizobia during nodulation of temperate legumes
    • Gage D.J. Infection and invasion of roots by symbiotic, nitrogen-fixing rhizobia during nodulation of temperate legumes. Microbiol. Mol. Biol. Rev. 2004, 68:280-300.
    • (2004) Microbiol. Mol. Biol. Rev. , vol.68 , pp. 280-300
    • Gage, D.J.1
  • 18
    • 0037353554 scopus 로고    scopus 로고
    • Legumes: importance and constraints to greater use
    • Graham P.H., Vance C.P. Legumes: importance and constraints to greater use. Plant Physiol. 2003, 131:872-877.
    • (2003) Plant Physiol. , vol.131 , pp. 872-877
    • Graham, P.H.1    Vance, C.P.2
  • 19
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Higgins D., Thompson J., Gibson T., Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22:4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Higgins, D.1    Thompson, J.2    Gibson, T.3    Thompson, J.D.4    Higgins, D.G.5    Gibson, T.J.6
  • 20
    • 36049050962 scopus 로고    scopus 로고
    • Rhizobia phylogenetically related to common bean symbionts Rhizobium giardinii and Rhizobium tropici isolated from peanut nodules in Central Argentina
    • Ibañez F., Taurian T., Angelini J., Tonelli M.L., Fabra A. Rhizobia phylogenetically related to common bean symbionts Rhizobium giardinii and Rhizobium tropici isolated from peanut nodules in Central Argentina. Soil Biol. Biochem. 2008, 40:537-539.
    • (2008) Soil Biol. Biochem. , vol.40 , pp. 537-539
    • Ibañez, F.1    Taurian, T.2    Angelini, J.3    Tonelli, M.L.4    Fabra, A.5
  • 21
    • 33645107423 scopus 로고    scopus 로고
    • Differences in common bean rhizobial populations associated with soil tillage management in Southern Brazil
    • Kaschuk G., Hungria M., Santos J.C.P., Berton-Junior J.F. Differences in common bean rhizobial populations associated with soil tillage management in Southern Brazil. Soil Till. Res. 2006, 87:205-217.
    • (2006) Soil Till. Res. , vol.87 , pp. 205-217
    • Kaschuk, G.1    Hungria, M.2    Santos, J.C.P.3    Berton-Junior, J.F.4
  • 22
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences
    • Kimura M. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 1980, 16:111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 23
    • 0027952597 scopus 로고
    • Rapid identification of rhizobia by restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes
    • Laguerre G., Allard M.R., Revoy F., Amarger N. Rapid identification of rhizobia by restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes. Appl. Environ. Microbiol. 1994, 60:56-63.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 56-63
    • Laguerre, G.1    Allard, M.R.2    Revoy, F.3    Amarger, N.4
  • 24
    • 0029891660 scopus 로고    scopus 로고
    • Typing of rhizobia by PCR DNA fingerprinting and PCR-restriction fragment length polymorphism analysis of chromosomal and symbiotic gene regions: application to Rhizobium leguminosarum and its different biovars
    • Laguerre G., Mavingui P., Allard M.R., Charnay M.P., Louvrier P., Mazurier S.I., Rigottier-Gois L., Amarger N. Typing of rhizobia by PCR DNA fingerprinting and PCR-restriction fragment length polymorphism analysis of chromosomal and symbiotic gene regions: application to Rhizobium leguminosarum and its different biovars. Appl. Environ. Microbiol. 1996, 62:2029-2036.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 2029-2036
    • Laguerre, G.1    Mavingui, P.2    Allard, M.R.3    Charnay, M.P.4    Louvrier, P.5    Mazurier, S.I.6    Rigottier-Gois, L.7    Amarger, N.8
  • 25
    • 34447123376 scopus 로고    scopus 로고
    • Symbiotic and genomic diversity of cowpea Bradyrhizobia from soils in Botswana and South Africa
    • Law I.J., Botha W.J., Majaule U., Phalane F. Symbiotic and genomic diversity of cowpea Bradyrhizobia from soils in Botswana and South Africa. Biol. Fertil. Soils 2007, 43:653-663.
    • (2007) Biol. Fertil. Soils , vol.43 , pp. 653-663
    • Law, I.J.1    Botha, W.J.2    Majaule, U.3    Phalane, F.4
  • 26
    • 77955334666 scopus 로고    scopus 로고
    • The biodiversity of beneficial microbe-host mutualism: the case of rhizobia
    • Lindström K., Murwira M., Willems A., Altier N. The biodiversity of beneficial microbe-host mutualism: the case of rhizobia. Res. Microbiol. 2010, 161:453-463.
    • (2010) Res. Microbiol. , vol.161 , pp. 453-463
    • Lindström, K.1    Murwira, M.2    Willems, A.3    Altier, N.4
  • 27
    • 0002542478 scopus 로고
    • Information theory in ecology
    • Margalef D.R. Information theory in ecology. Gen. Syst. 1958, 3:36-71.
    • (1958) Gen. Syst. , vol.3 , pp. 36-71
    • Margalef, D.R.1
  • 28
    • 3142551279 scopus 로고    scopus 로고
    • Contributions of rhizobia to soil nitrogen fertility
    • Kluwer Academic Publishers, Dordrecht, L.K. Abbott, D.V. Murphy (Eds.)
    • McInnes A., Haq K. Contributions of rhizobia to soil nitrogen fertility. Soil Biological Fertility: A Key to Sustainable Land Use in Agriculture 2003, 99-108. Kluwer Academic Publishers, Dordrecht. L.K. Abbott, D.V. Murphy (Eds.).
    • (2003) Soil Biological Fertility: A Key to Sustainable Land Use in Agriculture , pp. 99-108
    • McInnes, A.1    Haq, K.2
  • 29
    • 3142570952 scopus 로고    scopus 로고
    • Structure and diversity among rhizobial strains, populations and communities-a review
    • McInnes A., Thies J.E., Abbott L.K., Howieson J.G. Structure and diversity among rhizobial strains, populations and communities-a review. Soil Biol. Biochem. 2004, 36:1295-1308.
    • (2004) Soil Biol. Biochem. , vol.36 , pp. 1295-1308
    • McInnes, A.1    Thies, J.E.2    Abbott, L.K.3    Howieson, J.G.4
  • 30
    • 52349115909 scopus 로고    scopus 로고
    • Genetic diversity of rhizobia nodulating Arachis hypogaea L. in diverse land use systems of humid forest zone in Cameroon
    • Ngo Nkot L., Krasova-Wade T., Etoa F.X., Sylla S.N., Nwaga D. Genetic diversity of rhizobia nodulating Arachis hypogaea L. in diverse land use systems of humid forest zone in Cameroon. Appl. Soil Ecol. 2008, 40:411-416.
    • (2008) Appl. Soil Ecol. , vol.40 , pp. 411-416
    • Ngo Nkot, L.1    Krasova-Wade, T.2    Etoa, F.X.3    Sylla, S.N.4    Nwaga, D.5
  • 31
    • 0036201275 scopus 로고    scopus 로고
    • Identification of isolates from soybean nodules in Xinjiang region as Sinorhizobium xinjiangense and genetic differentiation of S. xinjiangense from Sinorhizobium fredii
    • Peng G.X., Tan Z.Y., Wang E.T., Reinhold-Hurek B., Chen W.F., Chen W.X. Identification of isolates from soybean nodules in Xinjiang region as Sinorhizobium xinjiangense and genetic differentiation of S. xinjiangense from Sinorhizobium fredii. Int. J. Syst. Evol. Microbiol. 2002, 52:457-462.
    • (2002) Int. J. Syst. Evol. Microbiol. , vol.52 , pp. 457-462
    • Peng, G.X.1    Tan, Z.Y.2    Wang, E.T.3    Reinhold-Hurek, B.4    Chen, W.F.5    Chen, W.X.6
  • 33
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 1987, 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 34
    • 0035103667 scopus 로고    scopus 로고
    • Genetic diversity of Bradyrhizobium strains isolated from Arachis hypogaea
    • Saleena L.M., Loganathan P., Rangarajan S., Nair S. Genetic diversity of Bradyrhizobium strains isolated from Arachis hypogaea. Can. J. Microbiol. 2001, 47:118-122.
    • (2001) Can. J. Microbiol. , vol.47 , pp. 118-122
    • Saleena, L.M.1    Loganathan, P.2    Rangarajan, S.3    Nair, S.4
  • 38
    • 0028161758 scopus 로고
    • Failure of inoculant rhizobia to overcome the dominante of indigenous strains for nodule formation
    • Streeter J.G. Failure of inoculant rhizobia to overcome the dominante of indigenous strains for nodule formation. Can. J. Microbiol. 1994, 40:513-522.
    • (1994) Can. J. Microbiol. , vol.40 , pp. 513-522
    • Streeter, J.G.1
  • 39
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura K., Dudley J., Nei M., Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 40
    • 33745495817 scopus 로고    scopus 로고
    • Genetic diversity of rhizobia nodulating Arachis hypogaea L. in central Argentinean soils
    • Taurian T., Ibañez F., Fabra A., Aguilar O.M. Genetic diversity of rhizobia nodulating Arachis hypogaea L. in central Argentinean soils. Plant Soil 2006, 282:41-52.
    • (2006) Plant Soil , vol.282 , pp. 41-52
    • Taurian, T.1    Ibañez, F.2    Fabra, A.3    Aguilar, O.M.4
  • 41
    • 0030044532 scopus 로고    scopus 로고
    • Plylogenetic relationships among Rhizobium species nodulating the common bean (Phaseolus vulgaris L.)
    • van Berkum P., Beyene D., Eardly B.D. Plylogenetic relationships among Rhizobium species nodulating the common bean (Phaseolus vulgaris L.). Int. J. Syst. Bacteriol. 1996, 46:240-244.
    • (1996) Int. J. Syst. Bacteriol. , vol.46 , pp. 240-244
    • van Berkum, P.1    Beyene, D.2    Eardly, B.D.3
  • 43
    • 0026323259 scopus 로고
    • Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes
    • Versalovic J., Koeuth T., Lupski J.R. Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes. Nucleic Acids Res. 1991, 24:6823-6831.
    • (1991) Nucleic Acids Res. , vol.24 , pp. 6823-6831
    • Versalovic, J.1    Koeuth, T.2    Lupski, J.R.3
  • 46
    • 0035151510 scopus 로고    scopus 로고
    • Phylogenetic and DNA-DNA hybridization analyses of Bradyrhizobium species
    • Willems A., Coopman R., Gillis M. Phylogenetic and DNA-DNA hybridization analyses of Bradyrhizobium species. Int. J. Syst. Evol. Microbiol. 2001, 51:111-117.
    • (2001) Int. J. Syst. Evol. Microbiol. , vol.51 , pp. 111-117
    • Willems, A.1    Coopman, R.2    Gillis, M.3
  • 47
    • 6944249168 scopus 로고    scopus 로고
    • Polyphasic characteristics of Bradyrhizobia isolated from nodules of peanut (Arachis hypogaea) in China
    • Yang J.K., Xie F.L., Zou J., Zhou Q., Zhou J.C. Polyphasic characteristics of Bradyrhizobia isolated from nodules of peanut (Arachis hypogaea) in China. Soil Biol. Biochem. 2005, 37:141-153.
    • (2005) Soil Biol. Biochem. , vol.37 , pp. 141-153
    • Yang, J.K.1    Xie, F.L.2    Zou, J.3    Zhou, Q.4    Zhou, J.C.5
  • 48
    • 33646086744 scopus 로고    scopus 로고
    • Manure and soil properties affect survival and persistence of soyabean nodulating rhizobia in smallholder soils of Zimbabwe
    • Zengeni R., Mpepereki S., Giller K.E. Manure and soil properties affect survival and persistence of soyabean nodulating rhizobia in smallholder soils of Zimbabwe. Appl. Soil Ecol. 2006, 32:232-242.
    • (2006) Appl. Soil Ecol. , vol.32 , pp. 232-242
    • Zengeni, R.1    Mpepereki, S.2    Giller, K.E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.