Diversity of rhizobia nodulating wild shrubs of Sicily and some neighbouring islands

Archives of Microbiology

Volumn 190, Issue 4, 2008, Pages 461-470

  Cardinale, Massimiliano ^a,b   Lanza, Angela ^a   Bonnì, Maria Laura ^a   Marsala, Salvatore ^a   Puglia, Anna Maria ^a   Quatrini, Paola ^a  

^a UNIVERSITY OF PALERMO   (Italy)

^b GRAZ UNIVERSITY OF TECHNOLOGY   (Austria)

Author keywords

16SrDNA; Bradyrhizobium; Genisteae; Mediterranean wild legumes; Nodule occupancy; Rhizobium; Soil rehabilitation; Symbiotic genes; Thermopsideae

Indexed keywords

INTERNAL TRANSCRIBED SPACER; RNA 16S;

ARTICLE; BRADYRHIZOBIUM; HOST RANGE; ITALY; LEGUME; MICROBIAL DIVERSITY; NODULATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RHIZOBIACEAE; SHRUB; SOIL TREATMENT; SYMBIOSIS; TAXONOMY; UNINDEXED SEQUENCE;

ACYLTRANSFERASES; BACTERIAL PROTEINS; BIODIVERSITY; BIOMASS; CLUSTER ANALYSIS; DNA FINGERPRINTING; DNA, BACTERIAL; DNA, RIBOSOMAL; DNA, RIBOSOMAL SPACER; FABACEAE; GENOTYPE; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANT ROOTS; POLYMORPHISM, GENETIC; RHIZOBIACEAE; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SICILY;

AGROBACTERIUM; ANAGYRIS FOETIDA; BRADYRHIZOBIACEAE; BRADYRHIZOBIUM; BRADYRHIZOBIUM CANARIENSE; BRADYRHIZOBIUM ELKANII; BRADYRHIZOBIUM JAPONICUM; GENISTEAE; MESORHIZOBIUM; RHIZOBIUM; TELINE MONSPESSULANA; THERMOPSIDEAE;

EID: 52449095157     PISSN: 03028933     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00203-008-0394-2     Document Type: Article

References (39)

1. SF Altschul TL Madden AA Schäffer J Zhang Z Zhang W Miller DJ Lipman 1997 Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucl Acids Res 25 3389 3402
2. PM Antunes A Varennes I de Rajcan MJ Goss 2006 Accumulation of specific flavonoids in soybean (Glycine max (L.) Merr.) as a function of the early tripartite symbiosis with arbuscular mycorrhizal fungi and Bradyrhizobium japonicum (Kirchner) Jordan Soil Biol Biochem 38 1234 1242
3. F Caravaca JM Barea J Palenzuela D Figueroa MM Alguacil A Roldán 2003 Establishment of shrub species in a degraded semiarid site after inoculation with native or allochthonous arbuscular mycorrhizal fungi Appl Soil Ecol 22 103 111
4. Cardinale M (2004) Risanamenento ambientale di un'ex discarica mediante recupero a verde utilizzando leguminose legnose ed inoculi microbici: studio dell'adattabilità delle piante ed analisi dell'evoluzione della comunità batterica del suolo. PhD thesis. University of Palermo, Italy.
5. M Cardinale L Brusetti P Quatrini S Borin AM Puglia A Rizzi E Zanardini C Sorlini C Corselli D Daffonchio 2004 Comparison of different primer sets for use in automated ribosomal intergenic spacer analysis of complex bacterial communities Appl Environ Microbiol 70 6147 6156
6. L Conte A Troìa G Cristofolini 1998 Genetic diversity in Cytisus aeolicus Guss. (Leguminosae) a rare endemite of the Italian flora Pl Biosyst 132 239 249
7. F Debellè L Moulin B Mangin J Denarie C Boivin 2001 Nod genes and Nod signals and the evolution of the rhizobium legume symbiosis Acta Biochim Pol 48 359 365
8. NS Diffenbaugh JS Pal F Giorgi X Gao 2007 Heat stress intensification in the Mediterranean climate change hotspot Geophys Res Lett 34 L11706 10.1029/2007GL030000
9. S Duodu TV Bhuvaneswari J Gudmundsson MM Svenning 2005 Symbiotic and saprophytic survival of three unmarked Rhizobium leguminosarum biovar trifolii strains introduced into the field Environ Microbiol 7 1049 1058
10. Felsenstein J (2004) PHYLIP (Phylogeny Inference Package) version 3.6 (Distributed by the author). Department of Genome Sciences, University of Washington, Seattle
11. J Felsenstein GA Churchill 1996 A hidden Markov model approach to variation among sites in rate of evolution Mol Biol Evol 13 93 104
12. K Haukka K Lindstrom JPW Young 1998 Three phylogenetic groups of nodA and nifH genes in Sinorhizobium and Mesorhizobium isolates from leguminous trees growing in Africa and Latin America Appl Environ Microbiol 64 419 426
13. M Kalita T Stȩpkowski B Lotocka W Malek 2006 Phylogeny of nodulation genes and symbiotic properties of Genista tinctoria bradyrhizobia Arch Microbiol 186 87 97
14. A Jarabo-Lorenzo R Perez-Galdona J Donate-Correa R Rivas E Velazquez M Hernandez F Temprano E Martinez-Molina T Ruiz-Argueso M Leon-Barrios 2003 Genetic diversity of bradyrhizobial populations from diverse geographic origins that nodulate Lupinus spp. and Ornithopus spp System Appl Microbiol 26 611 623
15. G Laguerre SI Mazurier N Amarger 1992 Plasmid profiles and restriction fragment length polymorphism of Rhizobium leguminosarum bv. viciae in field populations FEMS Microbiol Ecol 101 17 26
16. A Maremmani S Bedini I Matoševic PE Tomei M Giovannetti 2003 Type of mycorrhizal associations in two coastal nature reserves of the Mediterranean basin Mycorrhiza 13 33 40
17. L Moulin A Munive B Dreyfus C Boivin-Masson 2001 Nodulation of legumes by members of the β-subclass of Proteobacteria Nature 411 948 950
18. L Moulin G Bena C Boivin-Masson T Stȩpkowski 2004 Phylogenetic analyses of symbiotic nodulation genes support vertical and lateral gene co-transfer within the Bradyrhizobium genus Mol Phylogenet Evol 30 720 732
19. R Muresu L Sulas E Polone A Squartini 2005 PCR primers based on different portions of insertion elements can assist genetic relatedness studies, strain fingerprinting and species identification in rhizobia FEMS Microbiol Ecol 54 445 453
20. RD Page 1996 TreeView: an application to display phylogenetic trees on personal computers Comput Appl Biosci 12 357 358
21. X Perret C Staehelin WJ Broughton 2000 Molecular basis of symbiotic promiscuity Microbiol Mol Biol Rev 64 180 201
22. C Pardo P Cubas H Tahiri 2004 Molecular phylogeny and systematics of Genista (Leguminosae) and related genera based on nucleotide sequences of nrDNA (ITS region) and cpDNA (trnL-trnF intergenic spacer) Plant System Evol 244 93 119
23. V Poinsot E Belanger S Laberge GP Yang H Antoun J Cloutier M Treilhou J Denarié JC Prome F Debellé 2001 Unusual methyl-branched alpha, beta-unsaturated acyl chain substitutions in the Nod Factors of an arctic rhizobium, Mesorhizobium sp. strain N33 (Oxytropis arctobia) J Bacteriol 183 3721 3728
24. P Quatrini G Scaglione M Cardinale F Caradonna AM Puglia 2002 Bradyrhizobium sp. nodulating the Mediterranean shrub Spanish Broom (Spartium junceum L.) J Appl Microbiol 92 13 21
25. P Quatrini G Scaglione G Incannella L Badalucco AM Puglia T La Mantia 2003 Microbial inoculants on woody legumes to recover a municipal landfill site Water Air Soil Pollut Focus 3 189 199
26. N Requena I Jimenez M Toro JM Barea 1997 Interactions between plant-growth-promoting rhizobacteria (PGPR), arbuscular mycorrhizal fungi and Rhizobium spp. in the rhizosphere of Anthyllis cytisoides, a model legume for revegetation in mediterranean semi-arid ecosystems New Phytol 136 667 677
27. N Requena E Perez-Solis C Azcón-Aguilar P Jeffries JM Barea 2001 Management of indigenous plant-microbe symbioses aids restoration of desertified ecosystems Appl Environ Microbiol 67 495 498
28. S Rodríguez-Echeverría MA Pérez-Fernández S Vlaar T Finnan 2003 Analysis of the legume-rhizobia symbiosis in shrubs from central western Spain J Appl Microbiol 95 1367 1374
29. N Saitou M Nei 1987 The neighbor-joining method: a new method for reconstructing phylogenetic trees Mol Biol Evol 4 406 425
30. T Stȩpkowski A Swiderska K Miedzinska M Czaplinska M Swiderski J Biesiadka AB Legocki 2003 Low sequence similarity and gene content of symbiotic clusters of Bradyrhizobium sp. WM9 (Lupinus) indicate early divergence of "lupin" lineage in the genus Bradyrhizobium Antonie Van Leeuwenhoek 84 115 124
31. T Stȩpkowski L Moulin A Krzyzanska A McInnes IJ Law J Howieson 2005 European origin of Bradyrhizobium populations infecting lupins and serradella in soils of Western Australia and South Africa Appl Environ Microbiol 71 7041 7052
32. T Stȩpkowski CE Hughes IJ Law L Markiewicz D Gurda A Chlebicka L Moulin 2007 Diversification of lupine Bradyrhizobium strains: evidence from nodulation gene trees Appl Environ Microbiol 73 3254 3264
33. A Sy E Giraud P Jourand N Garcia A Willems P de Lajudie Y Prin M Neyra M Gillis C Boivin-Masson B Dreyfus 2001 Methylotrophic Methylobacterium bacteria nodulate and fix nitrogen in symbiosis with legumes J Bacteriol 183 214 220
34. JD Thompson DG Higgins TJ Gibson 1994 CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucl Acids Res 22 4673 4680
35. Vinuesa P, Silva C (2004) Species delineation and biogeography of symbiotic bacteria associated with cultivated and wild legumes. In: Werner D (ed) Biological Resources and Migration. Springer, Berlin, pp 43-155
36. P Vinuesa M Leon-Barrios C Silva A Willems A Jarabo-Lorenzo R Perez-Galdona D Werner E Martinez-Romero 2005 Bradyrhizobium canariense sp. nov., an acid-tolerant endosymbiont that nodulates endemic genistoid legumes (Papilionoideae: Genisteae) from the Canary Islands, along with Bradyrhizobium japonicum bv. genistearum, Bradyrhizobium genospecies alpha and Bradyrhizobium genospecies beta Int J Syst Evol Microbiol 55 569 575
37. W Weisburg SM Barns DA Pelletier DJ Lane 1991 16S ribosomal DNA amplification for phylogenetic study J Bacteriol 173 697 703
38. H Zahran 1999 Rhizobium-legume symbiosis and nitrogen fixation under severe conditions and in an arid climate Microbiol Mol Biol Rev 63 968 989
39. F Zakhia H Jeder O Domergue A Willems JC Cleyet-Marel M Gillis De Dreyfus P Lajudie 2004 Characterisation of wild legume nodulating bacteria (LNB) in the infra-arid zone of Tunisia System Appl Microbiol 7 380 395