An optimized relaxation-based coherence transfer NMR experiment for the measurement of side-chain order in methyl-protonated, highly deuterated proteins

Journal of Physical Chemistry B

Volumn 115, Issue 49, 2011, Pages 14878-14884

  Sun, Hechao ^a   Kay, Lewis E ^b,c   Tugarinov, Vitali ^a  

^a University of Maryland   (United States)

^b UNIVERSITY OF TORONTO   (Canada)

^c HOSPITAL FOR SICK CHILDREN   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

DEUTERIUM; EXPERIMENTS; FUNCTIONAL GROUPS; MAGNETIZATION; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PROTEINS; PROTONATION; QUANTUM THEORY;

COHERENCE TRANSFER; DEUTERATED PROTEINS; DOUBLE-QUANTUM; METHYL GROUP; QUANTITATIVE MEASUREMENT; SIDE-CHAINS; THEORETICAL TREATMENTS; TIME-SCALES; TRANSVERSE MAGNETIZATION;

MEASUREMENTS;

EID: 83455169183     PISSN: 15206106     EISSN: 15205207     Source Type: Journal    
DOI: 10.1021/jp209049k     Document Type: Article

References (60)

1. Metzler, W. J.; Wittekind, M.; Goldfarb, V.; Mueller, L.; Farmer, B. T. J. Am. Chem. Soc. 1996, 118, 6800
2. Gardner, K. H.; Rosen, M. K.; Kay, L. E. Biochemistry 1997, 36, 1389
3. Sprangers, R.; Velyvis, A.; Kay, L. E. Nat. Methods 2007, 4, 697
4. Ruschak, A. M.; Kay, L. E. J. Biomol. NMR 2010, 46, 75
5. Tang, Y.; Schneider, W. M.; Shen, Y.; Raman, S.; Inouye, M.; Baker, D.; Roth, M. J.; Montelione, G. T. J. Struct. Funct. Genomics 2010, 11, 223
6. Sheppard, D.; Sprangers, R.; Tugarinov, V. Prog. Nucl. Magn. Reson. Spectrosc. 2010, 56, 1
7. Richarz, R.; Nagayama, K.; Wüthrich, K. Biochemistry 1980, 19, 5189
8. Wittebort, R. J.; Rothgeb, T. M.; Szabo, A.; Gurd, F. R. Proc. Natl. Acad. Sci. U.S.A. 1979, 76, 1059
9. Henry, G. D.; Weiner, J. H.; Sykes, B. D. Biochemistry 1986, 25, 590
10. Bax, A. Two-Dimensional Nuclear Magnetic Resonance in Liquids; Hingham: Boston, MA, 1982.
11. Ernst, R. R.; Bodenhausen, G.; Wokaun, A. Principles of Nuclear Magnetic Resonance in One and Two Dimensions; Oxford University Press: Oxford, 1987.
12. Clore, G. M.; Gronenborn, A. M. Science 1991, 252, 1390
13. Wagner, G.; Thanabal, V.; Stockman, B. J.; Peng, J. W.; Nirmala, N. R.; Hyberts, S. G.; Goldberg, M. S.; Detlefsen, D. J.; Clubb, R. T.; Adler, M. Biopolymers 1992, 32, 381
14. Bax, A. Curr. Opin. Struct. Biol. 1994, 4, 738
15. Goto, N. K.; Kay, L. E. Curr. Opin. Struct. Biol. 2000, 10, 585
16. Tugarinov, V.; Kanelis, V.; Kay, L. E. Nat. Protoc. 2006, 1, 749
17. Kainosho, M.; Torizawa, T.; Iwashita, Y.; Terauchi, T.; Mei Ono, A.; Guntert, P. Nature 2006, 440, 52
18. Tugarinov, V.; Hwang, P. M.; Kay, L. E. Annu. Rev. Biochem. 2004, 73, 107
19. Kay, L. E. J. Magn. Reson. 2011, 210, 159
20. Kay, L. E. J. Magn. Reson. 2005, 173, 193
21. Muhandiram, D. R.; Yamazaki, T.; Sykes, B. D.; Kay, L. E. J. Am. Chem. Soc. 1995, 117, 11536
22. Millet, O.; Muhandiram, D. R.; Skrynnikov, N. R.; Kay, L. E. J. Am. Chem. Soc. 2002, 124, 6439
23. Tugarinov, V.; Ollerenshaw, J. E.; Kay, L. E. J. Am. Chem. Soc. 2005, 127, 8214
24. Tugarinov, V.; Kay, L. E. J. Am. Chem. Soc. 2006, 128, 12484
25. Yang, D.; Kay, L. E. J. Magn. Reson., Ser. B 1996, 110, 213
26. Ishima, R.; Louis, J. M.; Torchia, D. A. J. Am. Chem. Soc. 1999, 121, 11589
27. Ishima, R.; Petkova, A. P.; Louis, J. M.; Torchia, D. A. J. Am. Chem. Soc. 2001, 123, 6164
28. Tugarinov, V.; Kay, L. E. Biochemistry 2005, 44, 15970
29. Sprangers, R.; Kay, L. E. Nature 2007, 445, 618
30. Godoy-Ruiz, R.; Guo, C.; Tugarinov, V. J. Am. Chem. Soc. 2010, 132, 18340
31. Kay, L. E.; Torchia, D. A. J. Magn. Reson. 1991, 95, 536
32. Kay, L. E.; Bull, T. E.; Nicholson, L. K.; Griesinger, C.; Schwalbe, H.; Bax, A.; Torchia, D. A. J. Magn. Reson. 1992, 100, 538
33. Werbelow, L. G.; Grant, D. M. Adv. Magn. Reson. 1977, 9, 189
34. Vold, R. R.; Vold, R. L. J. Chem. Phys. 1976, 64, 320
35. Tugarinov, V.; Kay, L. E. ChemBioChem 2005, 6, 1567
36. Tugarinov, V.; Kay, L. E. J. Am. Chem. Soc. 2006, 128, 7299
37. Tugarinov, V.; Sprangers, R.; Kay, L. E. J. Am. Chem. Soc. 2007, 129, 1743
38. Muller, N.; Bodenhausen, G.; Ernst, R. R. J. Magn. Reson. 1987, 75, 297
39. Kay, L. E.; Prestegard, J. H. J. Am. Chem. Soc. 1987, 109, 3829
40. Gelis, I.; Bonvin, A. M.; Keramisanou, D.; Koukaki, M.; Gouridis, G.; Karamanou, S.; Economou, A.; Kalodimos, C. G. Cell 2007, 131, 756
41. Amero, C.; Schanda, P.; Durá, M. A.; Ayala, I.; Marion, D.; Franzetti, B.; Brutscher, B.; Boisbouvier, J. J. Am. Chem. Soc. 2009, 131, 3448
42. Ruschak, A. M.; Religa, T. L.; Breuer, S.; Witt, S.; Kay, L. E. Nature 2010, 467, 868
43. Religa, T. L.; Sprangers, R.; Kay, L. E. Science 2010, 328, 98
44. Cavanagh, J.; Fairbrother, W. J.; Palmer, A. G.; Rance, M.; Skelton, N. J. Protein NMR Spectroscopy; Elsevier Academic Press: Burlington, MA, 2007.
45. Howard, B. R.; Endrizzi, J. A.; Remington, S. J. Biochemistry 2000, 39, 3156
46. Mittermaier, A.; Kay, L. E. J. Am. Chem. Soc. 2001, 123, 6892
47. Guo, C.; Zhang, D.; Tugarinov, V. J. Am. Chem. Soc. 2008, 130, 10872
48. Tugarinov, V.; Hwang, P. M.; Ollerenshaw, J. E.; Kay, L. E. J. Am. Chem. Soc. 2003, 125, 10420
49. Tugarinov, V.; Kay, L. E. J. Biomol. NMR 2004, 28, 165
50. Delaglio, F.; Grzesiek, S.; Vuister, G. W.; Zhu, G.; Pfeifer, J.; Bax, A. J. Biomol. NMR 1995, 6, 277
51. Kamith, U.; Shriver, J. W. J. Biol. Chem. 1989, 264, 5586
52. Skrynnikov, N. R.; Millet, O.; Kay, L. E. J. Am. Chem. Soc. 2002, 124, 6449
53. Sheppard, D.; Li, D. W.; Brüschweiler, R.; Tugarinov, V. J. Am. Chem. Soc. 2009, 131, 15853
54. Cho, C. H.; Urquidi, J.; Singh, S.; Robinson, G. W. J. Phys. Chem. B 1999, 103, 1991
55. Bax, A.; Griffey, R. H.; Hawkings, B. L. J. Magn. Reson. 1983, 55, 301
56. Mueller, L. J. Am. Chem. Soc. 1979, 101, 4481
57. Sørensen, O. W. Prog. Nucl. Magn. Reson. Spectrosc. 1989, 21, 503
58. Eliav, U.; Navon, G. J. Chem. Phys. 1991, 95, 7114
59. Shaka, A. J.; Keeler, T.; Fenkiel, T.; Freeman, R. J. Magn. Reson. 1983, 52, 335
60. Marion, D.; Ikura, M.; Tschudin, R.; Bax, A. J. Magn. Reson. 1989, 85, 393