-
1
-
-
0028946084
-
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
-
239358, 7535888
-
Amann RI, Ludwig W, Schleifer KH. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 1995, 59:143-169. 239358, 7535888.
-
(1995)
Microbiol Rev
, vol.59
, pp. 143-169
-
-
Amann, R.I.1
Ludwig, W.2
Schleifer, K.H.3
-
2
-
-
35148888609
-
Microbial population structures in the deep marine biosphere
-
Huber JA, Welch DBM, Morrison GH, Huse SM, Neal PR, Butterfield DA, Sogin ML. Microbial population structures in the deep marine biosphere. Science 2007, 318:98-100.
-
(2007)
Science
, vol.318
, pp. 98-100
-
-
Huber, J.A.1
Welch, D.B.M.2
Morrison, G.H.3
Huse, S.M.4
Neal, P.R.5
Butterfield, D.A.6
Sogin, M.L.7
-
3
-
-
57149093416
-
Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing
-
Huse SM, Dethlefsen L, Huber JA, Welch D, Relman DA, Sogin ML. Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing. PLoS Genet 2008, 4:1-10.
-
(2008)
PLoS Genet
, vol.4
, pp. 1-10
-
-
Huse, S.M.1
Dethlefsen, L.2
Huber, J.A.3
Welch, D.4
Relman, D.A.5
Sogin, M.L.6
-
4
-
-
24044455869
-
Genome sequencing in microfabricated high-density picolitre reactors
-
1464427, 16056220
-
Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braverman MS, Chen YJ, Chen ZT, Dewell SB, de Winter A, Drake J, Du L, Fierro JM, Forte R, Gomes XV, Godwin BC, He W, Helgesen S, Ho CH, Hutchison SK, Irzyk GP, Jando SC, Alenquer MLI, Jarvie TP, Jirage KB, Kim JB, Knight JR, Lanza JR, et al. Genome sequencing in microfabricated high-density picolitre reactors. Nature 2005, 437:376-380. 1464427, 16056220.
-
(2005)
Nature
, vol.437
, pp. 376-380
-
-
Margulies, M.1
Egholm, M.2
Altman, W.E.3
Attiya, S.4
Bader, J.S.5
Bemben, L.A.6
Berka, J.7
Braverman, M.S.8
Chen, Y.J.9
Chen, Z.T.10
Dewell, S.B.11
de Winter, A.12
Drake, J.13
Du, L.14
Fierro, J.M.15
Forte, R.16
Gomes, X.V.17
Godwin, B.C.18
He, W.19
Helgesen, S.20
Ho, C.H.21
Hutchison, S.K.22
Irzyk, G.P.23
Jando, S.C.24
Alenquer, M.L.I.25
Jarvie, T.P.26
Jirage, K.B.27
Kim, J.B.28
Knight, J.R.29
Lanza, J.R.30
more..
-
5
-
-
77954834790
-
Bacterial diversity in rhizosphere soil from Antarctic vascular plants of Admiralty Bay, maritime Antarctica
-
10.1038/ismej.2010.35, 20357834
-
Lia CRS, Teixeira RS, Peixoto JC, Cury W, Jun S, Vivian H, Pellizari JT, Alexandre SR. Bacterial diversity in rhizosphere soil from Antarctic vascular plants of Admiralty Bay, maritime Antarctica. ISME J 2010, 4:989-1001. 10.1038/ismej.2010.35, 20357834.
-
(2010)
ISME J
, vol.4
, pp. 989-1001
-
-
Lia, C.R.S.1
Teixeira, R.S.2
Peixoto, J.C.3
Cury, W.4
Jun, S.5
Vivian, H.6
Pellizari, J.T.7
Alexandre, S.R.8
-
6
-
-
70449376998
-
High diversity of the viral community from an Antarctic Lake
-
10.1126/science.1179287, 19892985
-
López-Bueno A, Tamames J, Velázquez D, Moya A, Quesada A, Alcamí A. High diversity of the viral community from an Antarctic Lake. Science 2009, 326:858-861. 10.1126/science.1179287, 19892985.
-
(2009)
Science
, vol.326
, pp. 858-861
-
-
López-Bueno, A.1
Tamames, J.2
Velázquez, D.3
Moya, A.4
Quesada, A.5
Alcamí, A.6
-
8
-
-
0035072551
-
Clustering of highly homologous sequences to reduce the size of large protein database
-
10.1093/bioinformatics/17.3.282, 11294794
-
Li W, Jaroszewski L, Godzik A. Clustering of highly homologous sequences to reduce the size of large protein database. Bioinformatics 2001, 17:282-283. 10.1093/bioinformatics/17.3.282, 11294794.
-
(2001)
Bioinformatics
, vol.17
, pp. 282-283
-
-
Li, W.1
Jaroszewski, L.2
Godzik, A.3
-
9
-
-
77949525420
-
CANGS: a user-friendly utility for processing and analyzing 454 GS-FLX data in biodiversity studies
-
10.1186/1756-0500-3-3, 2830946, 20180949
-
Pandey RV, Nolte V, Schlötterer C. CANGS: a user-friendly utility for processing and analyzing 454 GS-FLX data in biodiversity studies. BMC Res Notes 2010, 3:3. 10.1186/1756-0500-3-3, 2830946, 20180949.
-
(2010)
BMC Res Notes
, vol.3
, pp. 3
-
-
Pandey, R.V.1
Nolte, V.2
Schlötterer, C.3
-
10
-
-
78650145196
-
A grammar-based distance metric enables fast and accurate clustering of large sets of 16S sequences
-
10.1186/1471-2105-11-601, 3022630, 21167044
-
Russell DJ, Way SF, Benson AK, Sayood K. A grammar-based distance metric enables fast and accurate clustering of large sets of 16S sequences. BMC Bioinformatics 2010, 11:601. 10.1186/1471-2105-11-601, 3022630, 21167044.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 601
-
-
Russell, D.J.1
Way, S.F.2
Benson, A.K.3
Sayood, K.4
-
11
-
-
78049240050
-
The Effects of alignment quality, distance calculation method, sequence filtering, and region on the analysis of 16S rRNA gene-based studies
-
10.1371/journal.pcbi.1000844, 2900292, 20628621
-
Schloss PD. The Effects of alignment quality, distance calculation method, sequence filtering, and region on the analysis of 16S rRNA gene-based studies. PLoS Comput Biol 2010, 6:e1000844. 10.1371/journal.pcbi.1000844, 2900292, 20628621.
-
(2010)
PLoS Comput Biol
, vol.6
-
-
Schloss, P.D.1
-
12
-
-
15444362001
-
Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
-
10.1128/AEM.71.1.501-506.2005, 544233, 15640226
-
Schloss PD, Handelsman J. Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol 2005, 71:501-1506. 10.1128/AEM.71.1.501-506.2005, 544233, 15640226.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 501-1506
-
-
Schloss, P.D.1
Handelsman, J.2
-
13
-
-
52949131932
-
Model-based prediction of sequence alignment quality
-
10.1093/bioinformatics/btn414, 18678587
-
Ahola V, Aittokallio T, Vihinen M, Uusipaikka E. Model-based prediction of sequence alignment quality. Bioinformatics 2008, 24:2165-2171. 10.1093/bioinformatics/btn414, 18678587.
-
(2008)
Bioinformatics
, vol.24
, pp. 2165-2171
-
-
Ahola, V.1
Aittokallio, T.2
Vihinen, M.3
Uusipaikka, E.4
-
14
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
10.1093/nar/gkh340, 390337, 15034147
-
Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 2004, 32:1792-1797. 10.1093/nar/gkh340, 390337, 15034147.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
15
-
-
62649137911
-
A comparison of MSA tools
-
2561165, 18841241
-
Essoussi N, Boujenfa K, Limam M. A comparison of MSA tools. Bioinformation 2008, 2:452-455. 2561165, 18841241.
-
(2008)
Bioinformation
, vol.2
, pp. 452-455
-
-
Essoussi, N.1
Boujenfa, K.2
Limam, M.3
-
16
-
-
0037100671
-
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform (describes the FFT-NS-1, FFT-NS-2 and FFT-NS-i strategies)
-
10.1093/nar/gkf436, 135756, 12136088
-
Katoh K, Misawa K, Kuma K, Miyata T. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform (describes the FFT-NS-1, FFT-NS-2 and FFT-NS-i strategies). Nucleic Acids Res 2002, 30:3059-3066. 10.1093/nar/gkf436, 135756, 12136088.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 3059-3066
-
-
Katoh, K.1
Misawa, K.2
Kuma, K.3
Miyata, T.4
-
17
-
-
77953627150
-
VITCOMIC: visualization tool for taxonomic compositions of microbial communities based on 16S rRNA gene sequences
-
10.1186/1471-2105-11-332, 2894824, 20565810
-
Mori H, Maruyama F, Kurokawa K. VITCOMIC: visualization tool for taxonomic compositions of microbial communities based on 16S rRNA gene sequences. BMC Bioinformatics 2010, 11:332. 10.1186/1471-2105-11-332, 2894824, 20565810.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 332
-
-
Mori, H.1
Maruyama, F.2
Kurokawa, K.3
-
18
-
-
0014757386
-
A general method applicable to the search for similarities in the amino acid sequence of two proteins
-
10.1016/0022-2836(70)90057-4, 5420325
-
Needleman SB, Wunsch CD. A general method applicable to the search for similarities in the amino acid sequence of two proteins. J Mol Biol 1970, 48:443-453. 10.1016/0022-2836(70)90057-4, 5420325.
-
(1970)
J Mol Biol
, vol.48
, pp. 443-453
-
-
Needleman, S.B.1
Wunsch, C.D.2
-
19
-
-
72949107142
-
Introducing Mothur: Open-source, platform-Independent, community-supported software for describing and comparing microbial communities
-
10.1128/AEM.01541-09, 2786419, 19801464
-
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, Sahl JW, Stres B, Thallinger GG, Van Horn DJ, Weber CF. Introducing Mothur: Open-source, platform-Independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 2009, 75:7537-7541. 10.1128/AEM.01541-09, 2786419, 19801464.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
Hollister, E.B.6
Lesniewski, R.A.7
Oakley, B.B.8
Parks, D.H.9
Robinson, C.J.10
Sahl, J.W.11
Stres, B.12
Thallinger, G.G.13
Van Horn, D.J.14
Weber, C.F.15
-
20
-
-
67249096511
-
ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences
-
10.1093/nar/gkp285, 2691849, 19417062
-
Sun Y, Cai Y, Liu L, Yu F, Farrell ML, McKendree W, Farmerie W. ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences. Nucleic Acids Res 2009, 37:e76. 10.1093/nar/gkp285, 2691849, 19417062.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Sun, Y.1
Cai, Y.2
Liu, L.3
Yu, F.4
Farrell, M.L.5
McKendree, W.6
Farmerie, W.7
-
21
-
-
58149200948
-
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
-
10.1093/nar/gkn879, 2686447, 19004872
-
Cole JR, Wang Q, Cardenas E, Fish J, Chai B, Farris RJ, Kulam-Syed-Mohideen AS, McGarrell DM, Marsh T, Garrity GM, Tiedje JM. The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res 2009, 37:D141. 10.1093/nar/gkn879, 2686447, 19004872.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Cole, J.R.1
Wang, Q.2
Cardenas, E.3
Fish, J.4
Chai, B.5
Farris, R.J.6
Kulam-Syed-Mohideen, A.S.7
McGarrell, D.M.8
Marsh, T.9
Garrity, G.M.10
Tiedje, J.M.11
-
22
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
10.1093/bioinformatics/btq461, 20709691
-
Edgar RC. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 2010, 26:2460-2461. 10.1093/bioinformatics/btq461, 20709691.
-
(2010)
Bioinformatics
, vol.26
, pp. 2460-2461
-
-
Edgar, R.C.1
-
23
-
-
79952001955
-
Clustering 16S rRNA for OTU prediction: a method of unsupervised Bayesian clustering
-
10.1093/bioinformatics/btq725, 3042185, 21233169
-
Hao X, Jiang R, Chen T. Clustering 16S rRNA for OTU prediction: a method of unsupervised Bayesian clustering. Bioinformatics 2011, 27:611-618. 10.1093/bioinformatics/btq725, 3042185, 21233169.
-
(2011)
Bioinformatics
, vol.27
, pp. 611-618
-
-
Hao, X.1
Jiang, R.2
Chen, T.3
-
24
-
-
34948842866
-
Accuracy and quality of massively parallel DNA pyrosequencing
-
10.1186/gb-2007-8-7-r143, 2323236, 17659080
-
Huse SM, Huber JA, Morrison HG, Sogin ML, Welch DM. Accuracy and quality of massively parallel DNA pyrosequencing. Genome Biol 2007, 8:R143. 10.1186/gb-2007-8-7-r143, 2323236, 17659080.
-
(2007)
Genome Biol
, vol.8
-
-
Huse, S.M.1
Huber, J.A.2
Morrison, H.G.3
Sogin, M.L.4
Welch, D.M.5
-
25
-
-
77955251092
-
Ironing out the wrinkles in the rare biosphere through improved OUT clustering
-
10.1111/j.1462-2920.2010.02193.x, 2909393, 20236171
-
Huse SM, Welch DM, Morrison HG, Sogin ML. Ironing out the wrinkles in the rare biosphere through improved OUT clustering. Environ Microbiol 2010, 12:1889-1898. 10.1111/j.1462-2920.2010.02193.x, 2909393, 20236171.
-
(2010)
Environ Microbiol
, vol.12
, pp. 1889-1898
-
-
Huse, S.M.1
Welch, D.M.2
Morrison, H.G.3
Sogin, M.L.4
-
26
-
-
69549112742
-
Accurate determination of microbial diversity from 454 pyrosequencing data
-
10.1038/nmeth.1361, 19668203
-
Quince C, Lanzen A, Curtis TP, Davenport RJ, Hall N, Head IM, Read LF, Sloan WT. Accurate determination of microbial diversity from 454 pyrosequencing data. Nat Methods 2009, 6:639-U27. 10.1038/nmeth.1361, 19668203.
-
(2009)
Nat Methods
, vol.6
-
-
Quince, C.1
Lanzen, A.2
Curtis, T.P.3
Davenport, R.J.4
Hall, N.5
Head, I.M.6
Read, L.F.7
Sloan, W.T.8
-
27
-
-
33947269742
-
Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities
-
10.1128/AEM.01996-06, 1828774, 17220268
-
Lozupone CA, Hamady M, Kelley ST, Knight R. Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities. Appl Environ Microbiol 2007, 73:1576-1585. 10.1128/AEM.01996-06, 1828774, 17220268.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 1576-1585
-
-
Lozupone, C.A.1
Hamady, M.2
Kelley, S.T.3
Knight, R.4
-
28
-
-
34548293679
-
Naive Bayesian classifier for rapad assignment of rRNA sequences into the new bacterial taxonomy
-
10.1128/AEM.00062-07, 1950982, 17586664
-
Wang Q, Garrity GM, Tiedje JM, Cole JR. Naive Bayesian classifier for rapad assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 2007, 73:5261-7. 10.1128/AEM.00062-07, 1950982, 17586664.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 5261-5267
-
-
Wang, Q.1
Garrity, G.M.2
Tiedje, J.M.3
Cole, J.R.4
-
29
-
-
80052300610
-
Bacterial community comparisons by taxonomy-supervised analysis independent of sequence alignment and clustering
-
Sul WJ, Cole JR, Jesus Eda C, Wang Q, Farris RJ, Fish JA, Tiedje JM. Bacterial community comparisons by taxonomy-supervised analysis independent of sequence alignment and clustering. Proc Natl Acad Sci USA 2011, 30(108):14637-14642.
-
(2011)
Proc Natl Acad Sci USA
, vol.30
, Issue.108
, pp. 14637-14642
-
-
Sul, W.J.1
Cole, J.R.2
Jesus Eda, C.3
Wang, Q.4
Farris, R.J.5
Fish, J.A.6
Tiedje, J.M.7
-
30
-
-
77952254719
-
Alignment and clustering of phylogenetic markers implications for microbial diversity studies
-
10.1186/1471-2105-11-152, 2859756, 20334679
-
White JR, Navlakha S, Nagarajan N, Ghodsi MR, Kingsford C, Pop M. Alignment and clustering of phylogenetic markers implications for microbial diversity studies. BMC Bioinformatics 2010, 11:152. 10.1186/1471-2105-11-152, 2859756, 20334679.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 152
-
-
White, J.R.1
Navlakha, S.2
Nagarajan, N.3
Ghodsi, M.R.4
Kingsford, C.5
Pop, M.6
-
31
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
10.1038/nmeth.f.303, 3156573, 20383131
-
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Peña AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R. QIIME allows analysis of high-throughput community sequencing data. Nat Methods 2010, 7:335-336. 10.1038/nmeth.f.303, 3156573, 20383131.
-
(2010)
Nat Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
Fierer, N.7
Peña, A.G.8
Goodrich, J.K.9
Gordon, J.I.10
Huttley, G.A.11
Kelley, S.T.12
Knights, D.13
Koenig, J.E.14
Ley, R.E.15
Lozupone, C.A.16
McDonald, D.17
Muegge, B.D.18
Pirrung, M.19
Reeder, J.20
Sevinsky, J.R.21
Turnbaugh, P.J.22
Walters, W.A.23
Widmann, J.24
Yatsunenko, T.25
Zaneveld, J.26
Knight, R.27
more..
-
32
-
-
77954656038
-
Effect of the herbicide glyphosate on glyphosate-tolerant maize rhizobacterial communities: a comparison with pre-emergency applied herbicide consisting of a combination of acetochlor and terbuthylazine
-
10.1111/j.1462-2920.2009.02146.x, 20105215
-
Barriuso J, Marín S, Mellado RP. Effect of the herbicide glyphosate on glyphosate-tolerant maize rhizobacterial communities: a comparison with pre-emergency applied herbicide consisting of a combination of acetochlor and terbuthylazine. Environ Microbiol 2010, 12:1021-1030. 10.1111/j.1462-2920.2009.02146.x, 20105215.
-
(2010)
Environ Microbiol
, vol.12
, pp. 1021-1030
-
-
Barriuso, J.1
Marín, S.2
Mellado, R.P.3
-
33
-
-
0000122573
-
PHYLIP - Phylogeny Inference Package
-
Felsenstein J. PHYLIP - Phylogeny Inference Package. Cladistics 1989, 5:164-166.
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
34
-
-
0004265380
-
Evolution of protein molecules. (Munro H N ed.) Mammalian protein Metabolism, III
-
New York: Academic Press
-
Jukes TH, Cantor CR. Evolution of protein molecules. (Munro H N ed.) Mammalian protein Metabolism, III. 1969, 21-132. New York: Academic Press.
-
(1969)
, pp. 21-132
-
-
Jukes, T.H.1
Cantor, C.R.2
-
35
-
-
77958119109
-
The Impact of rRNA Secondary Structure Consideration in Alignment and Tree Reconstruction: Simulated Data and a Case Study on the Phylogeny of Hexapods
-
10.1093/molbev/msq140, 20530152
-
Letsch HO, Kueck P, Stocsits RR, Misof B. The Impact of rRNA Secondary Structure Consideration in Alignment and Tree Reconstruction: Simulated Data and a Case Study on the Phylogeny of Hexapods. Mol Biol Evol 2010, 27:2507-2521. 10.1093/molbev/msq140, 20530152.
-
(2010)
Mol Biol Evol
, vol.27
, pp. 2507-2521
-
-
Letsch, H.O.1
Kueck, P.2
Stocsits, R.R.3
Misof, B.4
-
37
-
-
68549130740
-
Comparison of Species Richness Estimates Obtained Using Nearly Complete Fragments and Simulated Pyrosequencing-Generated Fragments in 16S rRNA Gene-Based Environmental Surveys
-
10.1128/AEM.00592-09, 2725448, 19561178
-
Youssef N, Sheik CS, Krumholz LR, Najar FZ, Roe BA, Elshahed MS. Comparison of Species Richness Estimates Obtained Using Nearly Complete Fragments and Simulated Pyrosequencing-Generated Fragments in 16S rRNA Gene-Based Environmental Surveys. Appl Environ Microbiol 2009, 75:5227-36. 10.1128/AEM.00592-09, 2725448, 19561178.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 5227-5236
-
-
Youssef, N.1
Sheik, C.S.2
Krumholz, L.R.3
Najar, F.Z.4
Roe, B.A.5
Elshahed, M.S.6
-
38
-
-
66349083859
-
Topographical and temporal diversity of the human skin microbiome
-
10.1126/science.1171700, 2805064, 19478181
-
Grice EA, Kong HH, Conlan S, Deming CB, Davis J, Young AC, Bouffard GG, Blakesley RW, Murray PR, Green ED, Turner ML, Segre JA. Topographical and temporal diversity of the human skin microbiome. Science 2009, 324:1190-1192. 10.1126/science.1171700, 2805064, 19478181.
-
(2009)
Science
, vol.324
, pp. 1190-1192
-
-
Grice, E.A.1
Kong, H.H.2
Conlan, S.3
Deming, C.B.4
Davis, J.5
Young, A.C.6
Bouffard, G.G.7
Blakesley, R.W.8
Murray, P.R.9
Green, E.D.10
Turner, M.L.11
Segre, J.A.12
-
39
-
-
45949107473
-
Recent developments in the MAFFT multiple sequence alignment program
-
10.1093/bib/bbn013, 18372315
-
Katoh K, Toh H. Recent developments in the MAFFT multiple sequence alignment program. Brief Bioinformatics 2008, 9:286-298. 10.1093/bib/bbn013, 18372315.
-
(2008)
Brief Bioinformatics
, vol.9
, pp. 286-298
-
-
Katoh, K.1
Toh, H.2
-
40
-
-
77950645212
-
Artificial and Natural. Duplicates in Pyrosequencing Reads of Metagenomic data
-
10.1186/1471-2105-11-187, 2874554, 20388221
-
Niu B, Fu L, Sun S, Li W. Artificial and Natural. Duplicates in Pyrosequencing Reads of Metagenomic data. BMC Bioinformatics 2010, 11:187. 10.1186/1471-2105-11-187, 2874554, 20388221.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 187
-
-
Niu, B.1
Fu, L.2
Sun, S.3
Li, W.4
-
41
-
-
0034201441
-
EMBOSS: the European Molecular Biology Open Software Suite
-
Rice P, Longden I, Bleasby A. EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet 2010, 16:276-277.
-
(2010)
Trends Genet
, vol.16
, pp. 276-277
-
-
Rice, P.1
Longden, I.2
Bleasby, A.3
-
42
-
-
74549125386
-
SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building
-
10.1093/molbev/msp259, 19854763
-
Gouy M, Guindon S, Gascuel O. SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol Biol Evol 2010, 27:221-224. 10.1093/molbev/msp259, 19854763.
-
(2010)
Mol Biol Evol
, vol.27
, pp. 221-224
-
-
Gouy, M.1
Guindon, S.2
Gascuel, O.3
-
43
-
-
37549027613
-
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
-
10.1093/nar/gkm864, 2175337, 17947321
-
Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, Peplies J, Glöckner FO. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 2007, 35:7188-7196. 10.1093/nar/gkm864, 2175337, 17947321.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 7188-7196
-
-
Pruesse, E.1
Quast, C.2
Knittel, K.3
Fuchs, B.M.4
Ludwig, W.5
Peplies, J.6
Glöckner, F.O.7
-
44
-
-
33747827586
-
NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes
-
DeSantis TZ, Hugenholtz P, Keller K, Brodie EL, Larsen N, Piceno YM, Phan R, Andersen GL. NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes. Nucleic Acids Res 2006, 34:394-399.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 394-399
-
-
DeSantis, T.Z.1
Hugenholtz, P.2
Keller, K.3
Brodie, E.L.4
Larsen, N.5
Piceno, Y.M.6
Phan, R.7
Andersen, G.L.8
-
45
-
-
79961181125
-
UCHIME improves sensitivity and speed of chimera detection
-
Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R. UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 2011, 15(27):2194-200.
-
(2011)
Bioinformatics
, vol.15
, Issue.27
, pp. 2194-2200
-
-
Edgar, R.C.1
Haas, B.J.2
Clemente, J.C.3
Quince, C.4
Knight, R.5
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