Marinobacter daqiaonensis sp. nov., a moderate halophile isolated from a yellow sea salt pond

International Journal of Systematic and Evolutionary Microbiology

Volumn 61, Issue 12, 2011, Pages 3003-3008

  Qu, Lingyun ^a   Zhu, Fengling ^a   Zhang, Inxing ^a   Gao, Chunlei ^a   Sun, Xiuqin ^a  

^a FIRST INSTITUTE OF OCEANOGRAPHY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

AMPICILLIN; CARBENICILLIN; CATALASE; ERYTHROMYCIN; FATTY ACID; NOVOBIOCIN; OXIDOREDUCTASE; RIBOSOME RNA; RNA 16S; STREPTOMYCIN; TETRACYCLINE; UBIQUINONE;

ARTICLE; BACTERIAL GROWTH; BACTERIUM ISOLATE; BACTERIUM ISOLATION; CHEMOTAXONOMY; CHINA; CONTROLLED STUDY; DNA BASE COMPOSITION; GENE SEQUENCE; HALOPHILE; MARINOBACTER; MARINOBACTER DAQIAONENSIS YCSA40; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHYLOGENY; PRIORITY JOURNAL; SEDIMENT;

BASE COMPOSITION; CHINA; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; GEOLOGIC SEDIMENTS; MARINOBACTER; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SODIUM CHLORIDE;

EID: 83055169247     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.028993-0     Document Type: Article

References (36)

1. Aguilera, M., Jimenez-Pranteda, M. L., Kharroub, K., Gonzalez-Paredes, A., Durban, J. J., Russell, N. J., Ramos-Cormenzana, A. MonteolivaSanchez, M. (2009). Marinobacter lacisalsi sp. nov., a moderately halophilic bacterium isolated from the saline-wetland wildfowl reserve Fuente de Piedra in southern Spain. Int J Syst Evol Microbiol 59, 1691-1695
2. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. Lipman, D. J. (1990). Basic local alignment search tool. J Mol Biol 215, 403-410
3. Chun, J., Lee, J.-H., Jung, Y., Kim, M., Kim, S., Kim, B. K. Lim, Y.-W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261
4. Dong, X.-Z. Cai, M.-Y. (editors) (2001). Determinative Manual for Routine Bacteriology. Beijing: Scientific Press (in Chinese).
5. Gauthier, M. J., Lafay, B., Christen, R., Fernandez, L., Acquaviva, M., Bonin, P. Bertrand, J. C. (1992). Marinobacter hydrocarbonoclasticus gen. nov.,sp.nov., a new, extremely halotolerant, hydrocarbondegrading marine bacterium. Int J Syst Bacteriol 42, 568-576
6. Gorshkova, N. M., Ivanova, E. P., Sergeev, A. F., Zhukova, N. V., Alexeeva, Y., Wright, J. P., Nicolau, D. V., Mikhailov, V. V. Christen, R. (2003). Marinobacter excellens sp.nov., isolated from sediments of the Sea of Japan. Int J Syst Evol Microbiol 53, 2073-2078
7. Green, D. H., Bowman, J. P., Smith, E. A., Gutierrez, T. Bolch, C. J. S. (2006). Marinobacter algicola sp. nov., isolated from laboratory cultures of paralytic shellfish toxin-producing dinoflagellates. Int J Syst Evol Microbiol 56, 523-527
8. Gu, J., Cai, H., Yu, S.-L., Qu, R., Yin, B., Guo, Y.-F., Zhao, J.-Y. Wu, X.-L. (2007). Marinobacter gudaonensis sp. nov., isolated from an oilpolluted saline soil in a Chinese oilfield. Int J Syst Evol Microbiol 57, 250-254
9. Guo, B., Gu, J., Ye, Y.-G., Tang, Y.-Q., Kida, K. Wu, X.-L. (2007). Marinobacter segnicrescens sp. nov., a moderate halophile isolated from benthic sediment of the South China Sea. Int J Syst Evol Microbiol 57, 1970-1974
10. Hedi, A., Sadfi, N., Fardeau, M.-L., Rebib, H., Cayol, J.-L., Ollivier, B. Boudabous, A. (2009). Studies on the biodiversity of halophilic microorganisms isolated from El-Djerid salt lake (Tunisia) under aerobic conditions. Int J Microbiol 2009, 731786.
11. Kharroub, K., Aguilera, M., Jimenez-Pranteda, M.-L., Gonzalez-Paredes, A., Ramos-Cormenzana, A. Monteoliva-Sanchez, M. (2011). Marinobacter oulmenensis sp. nov., a moderately halophilic bacterium isolated from brine of a salt concentrator. Int J Syst Evol Microbiol 61, 2210-2214
12. Kim, B.-Y., Weon, H.-Y., Yoo, S.-H., Kim, J.-S., Kwon, S.-W., Stackebrandt, E. Go, S.-J. (2006). Marinobacter koreensis sp. nov., isolated from sea sand in Korea. Int J Syst Evol Microbiol 56, 2653-2656
13. Komagata, K. Suzuki, K. (1987). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-207
14. Lane, D. J. (1991). 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics, pp. 115-175 Edited by E. Stackebrandt M. Goodfellow. Chichester: Wiley.
15. Liu, C. Shao, Z. (2005). Alcanivorax dieselolei sp.nov., a novel alkane-degrading bacterium isolated from sea water and deep-sea sediment. Int J Syst Evol Microbiol 55, 1181-1186
16. Marquez, M. C. Ventosa, A. (2005). Marinobacter hydrocarbonoclasticus Gauthier 1992 and Marinobacter aquaeolei Nguyen 1999 are heterotypic synonyms. Int J Syst Evol Microbiol 55, 1349-1351
17. Mesbah, M. Whitman, W. B. (1989). Measurement of deoxyguanosine/ thymidine ratios in complex mixtures by high-performance liquid chromatography for determination of the mole percentage guanine + cytosine of DNA. J Chromatogr A 479, 297-306
18. Qu, L., Lai, Q., Zhu, F., Hong, X., Sun, X. Shao, Z. (2011). Cohaesibacter marisflavi sp. nov., isolated from sediment of a seawater pond used for sea cucumber culture, and emended description of the genus Cohaesibacter. Int J Syst Evol Microbiol 61, 762-766
19. Rainey, F. A., Ward-Rainey, N., Kroppenstedt, R.M. Stackebrandt, E. (1996). The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam.nov. Int J Syst Bacteriol 46, 1088-1092
20. Romanenko, L. A., Schumann, P., Rohde, M., Zhukova, N. V., Mikhailov, V. V. Stackebrandt, E. (2005). Marinobacter bryzoorum sp. nov. and Marinobacter sediminum sp. nov., novel bacteria from the marine environment. Int J Syst Evol Microbiol 55, 143-148
21. Rzhetsky, A. Nei, M. (1992). A simple method for estimating and testing minimum-evolution trees. Mol Biol Evol 9, 945-967
22. Saitou, N. Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425
23. Sambrook, J., Fritsch, E. F. Maniatis, T. (1989). Molecular Cloning: a Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
24. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
25. Setati, M. E. (2010). Diversity and industrial potential of hydrolaseproducing halophilic/halotolerant eubacteria. Afr J Biotechnol 9, 1555-1560
26. Shieh, W. Y., Jean, W. D., Lin, Y.-T. Tseng, M. (2003). Marinobacter lutaoensis sp. nov., a thermotolerant marine bacterium isolated from a coastal hot spring in Lutao, Taiwan. Can J Microbiol 49, 244-252
27. Shivaji, S., Gupta, P., Chaturvedi, P., Suresh, K. Delille, D. (2005). Marinobacter maritimus sp. nov., a psychrotolerant strain isolated from sea water off the subantarctic Kerguelen islands. Int J Syst Evol Microbiol 55, 1453-1456
28. Smibert, R. M. Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654 Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood N. R. Krieg. Washington, DC: American Society for Microbiology.
29. Stackebrandt, E. Ebers, J. (2006). Taxonomic parameters revisited: tarnished gold standards. Microbiol Today 33, 152-155
30. Tamura, K., Dudley, J., Nei, M. Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599
31. Wang, C.-Y., Ng, C.-C., Tzeng, W.-S. Shyu, Y. T. (2009). Marinobacter szutsaonensis sp. nov., isolated from a solar saltern. Int J Syst Evol Microbiol 59, 2605-2609
32. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464
33. Xu, X.-W., Wu, Y.-H., Wang, C.-S., Yang, J.-Y., Oren, A. Wu, M. (2008). Marinobacter pelagius sp. nov., a moderately halophilic bacterium. Int J Syst Evol Microbiol 58, 637-640
34. Yoon, J.-H., Shin, D.-Y., Kim, I.-G., Kang, K. H. Park, Y.-H. (2003). Marinobacter litoralis sp. nov., a moderately halophilic bacterium isolated from sea water from the East Sea in Korea. Int J Syst Evol Microbiol 53, 563-568
35. Yoon, J.-H., Yeo, S.-H., Kim, I.-G. Oh, T.-K. (2004). Marinobacter flavimaris sp. nov. and Marinobacter daepoensis sp. nov., slightly halophilic organisms isolated from sea water of the Yellow Sea in Korea. Int J Syst Evol Microbiol 54, 1799-1803
36. Yoon, J.-H., Lee, M.-H., Kang, S.-J. Oh, T.-K. (2007). Marinobacter salicampi sp. nov., isolated from a marine solar saltern in Korea. Int J Syst Evol Microbiol 57, 2102-2105.