Deficiency mapping of the genomic regions associated with effects on developmental stability in Drosophila Melanogaster

Evolution

Volumn 65, Issue 12, 2011, Pages 3565-3577

  Takahashi, Kazuo H ^a   Okada, Yasukazu ^a   Teramura, Kouhei ^a   Tsujino, Masahiro ^a  

^a OKAYAMA UNIVERSITY   (Japan)

Author keywords

Bristles; Fluctuating asymmetry; Micro environmental canalization; Morphometry; Wings

Indexed keywords

CANALIZATION (BIOLOGY); EVOLUTIONARY BIOLOGY; FLUCTUATING ASYMMETRY; FLY; FUNCTIONAL MORPHOLOGY; GENETIC ANALYSIS; GENOME; GENOMICS; MOLECULAR ANALYSIS; MORPHOMETRY; QUANTITATIVE ANALYSIS;

ANIMAL; ARTICLE; CHROMOSOME MAP; DROSOPHILA MELANOGASTER; EVOLUTION; FEMALE; FORELIMB; GENE DELETION; GENETIC SELECTION; GENETICS; GROWTH, DEVELOPMENT AND AGING; HISTOLOGY; MALE;

ANIMALS; BIOLOGICAL EVOLUTION; CHROMOSOME MAPPING; DROSOPHILA MELANOGASTER; FEMALE; MALE; SELECTION, GENETIC; SEQUENCE DELETION; WING;

DROSOPHILA MELANOGASTER;

EID: 82855161387     PISSN: 00143820     EISSN: 15585646     Source Type: Journal    
DOI: 10.1111/j.1558-5646.2011.01400.x     Document Type: Article

References (72)

1. Batterham, P., A. G. Davies, A. Y. Game, and J. A. McKenzie 1996. Asymmetry-where evolutionary and developmental genetics meet. Bioessays 18:841-845.
2. Benjamini, Y., and Y. Hochberg 1995. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. B. 57:289-300.
3. Bergman, A., and M. L. Siegal 2003. Evolutionary capacitance as a general feature of complex gene networks. Nature 424:549-552.
4. Birdsall, K., E. Zimmerman, K. Teeter, and G. Gibson 2000. Genetic variation for the positioning of wing veins in Drosophila melanogaster. Evol. Dev. 2:16-24.
5. Bjorksten, T. A., K. Fowler, and A. Pomiankowski 2000. What does sexual trait FA tell us about stress? Trends Ecol. Evol. 15:163-166.
6. Bookstein, F. L. 1991. Morphometric tools for landmark data: geometry and biology. Cambridge Univ. Press, Cambridge
7. Breuker, C. J., J. S. Patterson, and C. P. Klingenberg 2006. A single basis for developmental buffering of Drosophila wing shape. PLoS One 1:e7.
8. Bubliy, O. A., A. G. Imasheva, and V. Loeschcke 2000. Half-sib analysis of three morphological traits in Drosophila melanogaster under poor nutrition. Hereditas 133:59-63.
9. Butler, M. J., T. L. Jacobsen, D. M. Cain, M. G. Jarman, M. Hubank, J. R. Whittle, R. Phillips, and A. Simcox 2003. Discovery of genes with highly restricted expression patterns in the Drosophila wing disc using DNA oligonucleotide microarrays. Development 130:659-670.
10. Clarke, G. M. 1998. The genetic basis of developmental stability. V. Inter- and intra-individual character variation. Heredity 80:562-567.
11. Davies, A. G., A. Y. Game, Z. Chen, T. J. Williams, S. Goodall, J. L. Yen, J. A. McKenzie, and P. Batterham 1996. Scalloped wings is the Lucilia cuprina Notch homologue and a candidate for the modifier of fitness and asymmetry of diazinon resistance. Genetics 143:1321-1337.
12. Debat, V., and P. David 2001. Mapping phenotypes: canalization, plasticity and developmental stability. Trends Ecol. Evol. 16:555-561.
13. Debat, V., C. C. Milton, S. Rutherford, C. P. Klingenberg, and A. A. Hoffmann 2006. HSP90 and the quantitative variation of wing shape in Drosophila melanogaster. Evolution 60:2529-2538.
14. Dilda, C. L., and T. F. Mackay 2002. The genetic architecture of Drosophila sensory bristle number. Genetics 162:1655-1674.
15. Dworkin, I. 2005. A study of canalization and developmental stability in the sternopleural bristle system of Drosophila melanogaster. Evolution 59:1500-1509.
16. Emlen, J. M., D. C. Freeman, and J. H. Graham 2006. The adaptive basis of developmental instability: a hypothesis and its implications. Pp. 51-61 in M. Polak, ed. Developmental instability. Oxford Univ. Press, New York
17. Flury, B. 1997. A first course in multivariate statistics. Springer, New York
18. Flury, B., and H. Riedwyl 1986. Standard distance in univariate and multivariate analysis. Am. Stat. 40:249-251.
19. Fowler, K., and M. C. Whitlock 1994. Fluctuating asymmetry does not increase with moderate inbreeding in Drosophila melanogaster. Heredity 73:373-376.
20. Fuller, R. C., and D. Houle 2006. Inheritance of developmental instability. Pp. 157-183 in M. Polak, ed. Developmental instability. Oxford Univ. Press, New York
21. Gangestad, S. W., and R. Thornhill 1999. Individual differences in developmental precision and fluctuating asymmetry: a model and its implications. J. Evol. Biol. 12:402-416.
22. Haag-Liautard, C., M. Dorris, X. Maside, S. Macaskill, D. L. Halligan, D. Houle, B. Charlesworth, and P. D. Keightley 2007. Direct estimation of per nucleotide and genomic deleterious mutation rates in Drosophila. Nature 445:82-85.
23. Hill, G. E. 1995. Ornamental traits as indicators of environmental health. Bioscience 45:25-31.
24. Houchmandzadeh, B., E. Wieschaus, and S. Leibler 2002. Establishment of developmental precision and proportions in the early Drosophila embryo. Nature 415:798-802.
25. Kawecki, T. J. 2000. The evolution of genetic canalization under fluctuating selection. Evolution 54:1-12.
26. Kellermann, V. M., A. A. Hoffmann, and C. M. Sgro 2007. Hsp90 inhibition and the expression of phenotypic variability in the rainforest species Drosophila birchii. Biol. J. Linn. Soc. 92:457-465.
27. Klingenberg, C. P. 2003a. A developmental perspective on developmental instability: theory, models and mechanisms. Pp. 14-34 in M. Polak, ed. Developmental instability. Oxford Univ. Press, New York
28. Klingenberg, C. P. 2003b. Quantitative genetics of geometric shape: heritability and the pitfalls of the univariate approach. Evolution 57:191-195.
29. Klingenberg, C. P. 2006. A developmental perspective on developmental instability: theory, models and mechanisms. Pp. 14-34 in M. Polak, ed. Developmental instability. Oxford Univ. Press, New York
30. Klingenberg, C. P., M. Barluenga, and A. Meyer 2002. Shape analysis of symmetric structures: quantifying variation among individuals and asymmetry. Evolution 56:1909-1920.
31. Klingenberg, C. P., and G. S. McIntyre 1998. Geometric morphometrics of developmental instability: analyzing patterns of fluctuating asymmetry with procrustes methods. Evolution 52:1363-1375.
32. Klingenberg, C. P., and L. R. Monteiro 2005. Distances and directions in multidimensional shape spaces: implications for morphometric applications. Syst. Biol. 54:678-688.
33. Klingenberg, C. P., and H. F. Nijhout 1999. Genetics of fluctuating asymmetry: a developmental model of developmental instability. Evolution 53:358-375.
34. Leamy, L. L., and C. P. Klingenberg 2005. The genetics and evolution of fluctuating asymmetry. Annu. Rev. Ecol. Evol. Syst. 36:1-21.
35. Lens, L., S. Van Dongen, S. Kark, and E. Matthysen 2002. Fluctuating asymmetry as an indicator of fitness: can we bridge the gap between studies? Biol. Rev. Camb. Philos. Soc. 77:27-38.
36. Leung, B., and M. R. Forbes 1996. Fluctuating asymmetry in relation to stress and fitness: effects of trait type as revealed by meta-analysis. Ecoscience 3:400-413.
37. Leung, B., and M. R. Forbes 1997. Modelling fluctuating asymmetry in relation to stress and fitness. Oikos 78:397-405.
38. Leung, B., M. R. Forbes, and D. Houle 2000. Fluctuating asymmetry as a bioindicator of stress: comparing efficacy of analyses involving multiple traits. Am. Nat. 155:101-115.
39. Levy, S. F., and M. L. Siegal 2008. Network hubs buffer environmental variation in Saccharomyces cerevisiae. PLoS Biol. 6:e264.
40. Mackay, T. F., and R. F. Lyman 2005. Drosophila bristles and the nature of quantitative genetic variation. Philos. Trans. R. Soc. Lond. B 360:1513-1527.
41. Mardia, K. V., J. T. Kent, and J. M. Bibby 1979. Multivariate analysis. Academic Press, London
42. Markow, T. A., D. Bustoz, and S. Pitnick 1996. Sexual selection and a secondary sexual character in two Drosophila species. Anim. Behav. 52:759-766.
43. Meiklejohn, C. D., and D. L. Hartl 2002. A single mode of canalization. Trends Ecol. Evol. 17:468-473.
44. Milton, C. C., P. Batterham, J. A. McKenzie, and A. A. Hoffmann 2005. Effect of E (sev) and Su (Raf) Hsp83 mutants and Trans-heterozygotes on bristle trait means and variation in Drosophila melanogaster. Genetics 171:119-130.
45. Milton, C. C., B. Huynh, P. Batterham, S. Rutherford, and A. A. Hoffmann 2003. Quantitative trait symmetry independent of Hsp90 buffering: distinct modes of genetic canalization and developmental stability. Proc. Natl. Acad. Sci. USA 100:13396-13401.
46. Moller, A. P., and A. Pomiankowski 1993. Fluctuating asymmetry and sexual selection. Genetica 89:267-279.
47. Moller, A. P., and R. Thornhill 1997. A meta-analysis of the heritability of developmental stability. J. Evol. Biol. 10:1-16.
48. Moller, A. P., and R. Thornhill 1998. Bilateral symmetry and sexual selection: a meta-analysis. Am. Nat. 151:174-192.
49. Norga, K. K., M. C. Gurganus, C. L. Dilda, A. Yamamoto, R. F. Lyman, P. H. Patel, G. M. Rubin, R. A. Hoskins, T. F. Mackay, and H. J. Bellen 2003. Quantitative analysis of bristle number in Drosophila mutants identifies genes involved in neural development. Curr. Biol. 13:1388-1396.
50. Palmer, A. R. 1999. Detecting publication bias in meta-analyses: a case study of fluctuating asymmetry and sexual selection Am. Nat. 154:220-223.
51. Palmer, R. A., and C. Strobeck 1986. Fluctuating asymmetry: measurement, analysis, patterns. Annu. Rev. Ecol. Syst. 17:391-421.
52. Pelabon, C., T. F. Hansen, A. J. Carter, and D. Houle 2010. Evolution of variation and variability under fluctuating, stabilizing, and disruptive selection. Evolution 64:1912-1925.
53. Polak, M. 2008. The developmental instability-sexual selection hypothesis: a general evaluation and case study. Evol. Biol. 35:208-230.
54. Polak, M., and P. W. Taylor 2007. A primary role of developmental instability in sexual selection. Proc. Biol. Sci. 274:3133-3140.
55. Queitsch, C., T. A. Sangster, and S. Lindquist 2002. Hsp90 as a capacitor of phenotypic variation. Nature 417:618-624.
56. Raj, A., S. A. Rifkin, E. Andersen, and A. van Oudenaarden 2010. Variability in gene expression underlies incomplete penetrance. Nature 463:913-918.
57. Ren, N., C. Zhu, H. Lee, and P. N. Adler 2005. Gene expression during Drosophila wing morphogenesis and differentiation. Genetics 171:625-638.
58. Rohlf, F. J., and D. Slice 1990. Extensions of the Procrustes method for the optimal superimposition of landmarks. Syst. Zool. 39:40-59.
59. Rohlf, F. J., and L. F. Marcus 1993. A revolution in morphometrics. Trends Ecol. Evol. 8:129-132.
60. Rutherford, S., and S. Lindquist 1998. Hsp90 as a capacitor for morphological evolution. Nature 396:336-342.
61. Ryder, E., M. Ashburner, R. Bautista-Llacer, J. Drummond, J. Webster, G. Johnson, T. Morley, Y. S. Chan, F. Blows, D. Coulson, et al. 2007. The DrosDel deletion collection: a Drosophila genomewide chromosomal deficiency resource. Genetics 177:615-629.
62. Ryder, E., B. Fiona, A. Michael, B.-L. Rosa, C. Darin, D. Jenny, W. Jane, G. David, G. Nicola, J. Glynnis, et al. 2004. The DrosDel collection: a set of P-element insertions for generating custom chromosomal aberrations in Drosophila melanogaster. Genetics 167:797-813.
63. Scheiner, S. M., R. L. Caplan, and R. F. Lyman 1991. The genetics of phenotypic plasticity. III. Genetic correlations and fluctuating asymmetries. J. Evol. Biol. 4:51-68.
64. Takahashi, K. H., P. J. Daborn, A. A. Hoffmann, and T. Takano-Shimizu 2011a. Environmental stress-dependent effects of deletions encompassing Hsp70Ba on canalization and quantitative trait asymmetry in Drosophila melanogaster. PLoS One 6:e17295.
65. Takahashi, K. H., Y. Okada, and K. Teramura 2011b. Genome-wide deficiency mapping of the regions responsible for temporal canalization of the developmental processes of Drosophila melanogaster. J. Hered. 102:448-457.
66. Takahashi, K. H., L. Rako, T. Takano-Shimizu, A. A. Hoffmann, and S. F. Lee 2010. Effects of small Hsp genes on developmental stability and microenvironmental canalization. BMC Evol. Biol. 10:284.
67. Van Valen, L. 1962. A study of fluctuating asymmetry. Evolution 16:125-142.
68. Vollestad, L. A., K. Hindar, and A. P. Moller 1999. A meta-analysis of fluctuating asymmetry in relation to heterozygosity. Heredity 83:206-218.
69. Waddington, C. H. 1957. The strategy of the genes. George Allen & Unwin, London
70. Weber, K., R. Eisman, S. Higgins, L. Morey, A. Patty, M. Tausek, and Z. B. Zeng 2001. An analysis of polygenes affecting wing shape on chromosome 2 in Drosophila melanogaster. Genetics 159:1045-1057.
71. Whitlock, M. C., and K. Fowler 1997. The instability of studies of instability. J. Evol. Biol. 10:63-67.
72. Zimmerman, E., A. Palsson, and G. Gibson 2000. Quantitative trait loci affecting components of wing shape in Drosophila melanogaster. Genetics 155:671-683.