-
1
-
-
33845683068
-
Metabolically active microbial communities in uranium-contaminated subsurface sediments
-
Akob, D.M., Mills, H.J., and Kostka, J.E. (2007) Metabolically active microbial communities in uranium-contaminated subsurface sediments. FEMS Microbiol Ecol 59: 95-107.
-
(2007)
FEMS Microbiol Ecol
, vol.59
, pp. 95-107
-
-
Akob, D.M.1
Mills, H.J.2
Kostka, J.E.3
-
2
-
-
34548414947
-
Response of Alteromonadaceae and Rhodobacteriaceae to glucose and phosphorus manipulation in marine mesocosms
-
Allers, E., Gómez-Consarnau, L., Pinhassi, J., Gasol, J.M., Šimek, K., and Pernthaler, J. (2007) Response of Alteromonadaceae and Rhodobacteriaceae to glucose and phosphorus manipulation in marine mesocosms. Environ Microbiol 9: 2417-2429.
-
(2007)
Environ Microbiol
, vol.9
, pp. 2417-2429
-
-
Allers, E.1
Gómez-Consarnau, L.2
Pinhassi, J.3
Gasol, J.M.4
Šimek, K.5
Pernthaler, J.6
-
3
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S.F., Gish, W., Miller, W., Myers, E.W., and Lipman, D.J. (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
4
-
-
70350773421
-
Rapid decay of host-specific fecal Bacteroidales cells in seawater as measured by quantitative PCR with propidium monoazide
-
Bae, S., and Wuertz, S. (2009a) Rapid decay of host-specific fecal Bacteroidales cells in seawater as measured by quantitative PCR with propidium monoazide. Water Res 43: 4850-4859.
-
(2009)
Water Res
, vol.43
, pp. 4850-4859
-
-
Bae, S.1
Wuertz, S.2
-
5
-
-
65549146674
-
Discrimination of viable and dead fecal Bacteroidales bacteria by quantitative PCR with propidium monoazide
-
Bae, S., and Wuertz, S. (2009b) Discrimination of viable and dead fecal Bacteroidales bacteria by quantitative PCR with propidium monoazide. Appl Environ Microbiol 75: 2940-2944.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 2940-2944
-
-
Bae, S.1
Wuertz, S.2
-
6
-
-
66649096846
-
Factors influencing the persistence of fecal Bacteroides in stream water
-
Bell, A., Layton, A.C., McKay, L., Williams, D., Gentry, R., and Sayler, G.S. (2009) Factors influencing the persistence of fecal Bacteroides in stream water. J Environ Qual 38: 1224-1232.
-
(2009)
J Environ Qual
, vol.38
, pp. 1224-1232
-
-
Bell, A.1
Layton, A.C.2
McKay, L.3
Williams, D.4
Gentry, R.5
Sayler, G.S.6
-
7
-
-
0033774937
-
A PCR assay to discriminate human and ruminant feces on the basis of host differences in Bacteroides-Prevotella genes encoding 16S rRNA
-
Bernhard, A.E., and Field, K.G. (2000) A PCR assay to discriminate human and ruminant feces on the basis of host differences in Bacteroides-Prevotella genes encoding 16S rRNA. Appl Environ Microbiol 66: 4571-4574.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 4571-4574
-
-
Bernhard, A.E.1
Field, K.G.2
-
8
-
-
37249063814
-
Enterococci concentrations in diverse coastal environments exhibit extreme variability
-
Boehm, A.B. (2007) Enterococci concentrations in diverse coastal environments exhibit extreme variability. Environ Sci Technol 41: 8227-8232.
-
(2007)
Environ Sci Technol
, vol.41
, pp. 8227-8232
-
-
Boehm, A.B.1
-
9
-
-
70350774361
-
Covariation and photoinactivation of traditional and novel indicator organisms and human viruses at a sewage-impacted marine beach
-
Boehm, A.B., Yamahara, K.M., Love, D.C., Peterson, B.M., McNeill, K., and Nelson, K.L. (2009) Covariation and photoinactivation of traditional and novel indicator organisms and human viruses at a sewage-impacted marine beach. Environ Sci Technol 43: 8046-8052.
-
(2009)
Environ Sci Technol
, vol.43
, pp. 8046-8052
-
-
Boehm, A.B.1
Yamahara, K.M.2
Love, D.C.3
Peterson, B.M.4
McNeill, K.5
Nelson, K.L.6
-
11
-
-
27144467868
-
Elevation of RNase R in response to multiple stress conditions
-
Chen, C., and Deutscher, M.P. (2005) Elevation of RNase R in response to multiple stress conditions. J Biol Chem 280: 34393-34396.
-
(2005)
J Biol Chem
, vol.280
, pp. 34393-34396
-
-
Chen, C.1
Deutscher, M.P.2
-
12
-
-
71549166026
-
Rapid QPCR-based assay for fecal Bacteroides spp. as a tool for assessing fecal contamination in recreational waters
-
Converse, R.R., Blackwood, A.D., Kirs, M., Griffith, J.F., and Noble, R.T. (2009) Rapid QPCR-based assay for fecal Bacteroides spp. as a tool for assessing fecal contamination in recreational waters. Water Res 43: 4828-4837.
-
(2009)
Water Res
, vol.43
, pp. 4828-4837
-
-
Converse, R.R.1
Blackwood, A.D.2
Kirs, M.3
Griffith, J.F.4
Noble, R.T.5
-
13
-
-
4644332515
-
Use of the MagNA pure LC automated nucleic acid extraction system followed by real-time reverse transcription-PCR for ultrasensitive quantitation of hepatitis C virus RNA
-
Cook, L., Ng, K.-W., Bagabag, A., Corey, L., and Jerome, K.R. (2004) Use of the MagNA pure LC automated nucleic acid extraction system followed by real-time reverse transcription-PCR for ultrasensitive quantitation of hepatitis C virus RNA. J Clin Microbiol 42: 4130-4136.
-
(2004)
J Clin Microbiol
, vol.42
, pp. 4130-4136
-
-
Cook, L.1
Ng, K.-W.2
Bagabag, A.3
Corey, L.4
Jerome, K.R.5
-
14
-
-
0025919221
-
Sunlight and the survival of enteric bacteria in natural waters
-
Davies, C.M., and Evison, L.M. (1991) Sunlight and the survival of enteric bacteria in natural waters. J Appl Microbiol 70: 265-274.
-
(1991)
J Appl Microbiol
, vol.70
, pp. 265-274
-
-
Davies, C.M.1
Evison, L.M.2
-
15
-
-
0028163832
-
Sunlight inactivation of Enterococci and fecal coliforms in sewage effluent diluted in seawater
-
Davies-Colley, R.J., Bell, R.G., and Donnison, A.M. (1994) Sunlight inactivation of Enterococci and fecal coliforms in sewage effluent diluted in seawater. Appl Environ Microbiol 60: 2049-2058.
-
(1994)
Appl Environ Microbiol
, vol.60
, pp. 2049-2058
-
-
Davies-Colley, R.J.1
Bell, R.G.2
Donnison, A.M.3
-
16
-
-
0029825010
-
Survival of cells and DNA of Aeromonas salmonicida released into aquatic microcosms
-
Deere, D., Porter, J., Pickup, R., and Edwards, C. (1996) Survival of cells and DNA of Aeromonas salmonicida released into aquatic microcosms. J Appl Bacteriol 81: 309-318.
-
(1996)
J Appl Bacteriol
, vol.81
, pp. 309-318
-
-
Deere, D.1
Porter, J.2
Pickup, R.3
Edwards, C.4
-
17
-
-
4644301880
-
Rapid estimation of numbers of fecal Bacteroidetes by use of a quantitative PCR assay for 16S rRNA genes
-
Dick, L.K., and Field, K.G. (2004) Rapid estimation of numbers of fecal Bacteroidetes by use of a quantitative PCR assay for 16S rRNA genes. Appl Environ Microbiol 70: 5695-5697.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 5695-5697
-
-
Dick, L.K.1
Field, K.G.2
-
18
-
-
77952247779
-
Relative decay of Bacteroidales microbial source tracking markers and cultivated Escherichia coli in fresh water microcosms
-
Dick, L.K., Stelzer, E.A., Bertke, E.E., Fong, D.L., and Stoeckel, D.M. (2010) Relative decay of Bacteroidales microbial source tracking markers and cultivated Escherichia coli in fresh water microcosms. Appl Environ Microbiol 76: 3255-3262.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 3255-3262
-
-
Dick, L.K.1
Stelzer, E.A.2
Bertke, E.E.3
Fong, D.L.4
Stoeckel, D.M.5
-
19
-
-
82555178947
-
-
Insights gained by comparing natural ponds, pond mesocosms, and pond enclosures. In 93rd Ecological Society of America Annual Meeting. Milwaukee, WI.
-
Downing, A.L., Woods, L.M., Mock, A.E., and Leibold, M.A. (2008) Insights gained by comparing natural ponds, pond mesocosms, and pond enclosures. In 93rd Ecological Society of America Annual Meeting. Milwaukee, WI.
-
(2008)
-
-
Downing, A.L.1
Woods, L.M.2
Mock, A.E.3
Leibold, M.A.4
-
20
-
-
34547531503
-
Fecal source tracking, the indicator paradigm, and managing water quality
-
Field, K.G., and Samadpour, M. (2007) Fecal source tracking, the indicator paradigm, and managing water quality. Water Res 41: 3517-3538.
-
(2007)
Water Res
, vol.41
, pp. 3517-3538
-
-
Field, K.G.1
Samadpour, M.2
-
21
-
-
79954996511
-
Ribosomal tag pyrosequencing of DNA and RNA from benthic coral reef microbiota: community spatial structure, rare members and nitrogen-cycling guilds
-
Gaidos, E., Rusch, A., and Ilardo, M. (2011) Ribosomal tag pyrosequencing of DNA and RNA from benthic coral reef microbiota: community spatial structure, rare members and nitrogen-cycling guilds. Environ Microbiol 13: 1138-1152.
-
(2011)
Environ Microbiol
, vol.13
, pp. 1138-1152
-
-
Gaidos, E.1
Rusch, A.2
Ilardo, M.3
-
23
-
-
33750936033
-
Study of bacterial communities in Antarctic coastal waters by a combination of 16S rRNA and 16S rDNA sequencing
-
Gentile, G., Giuliano, L., D'Auria, G., Smedile, F., Azzaro, M., De Domenico, M., and Yakimov, M.M. (2006) Study of bacterial communities in Antarctic coastal waters by a combination of 16S rRNA and 16S rDNA sequencing. Environ Microbiol 8: 2150-2161.
-
(2006)
Environ Microbiol
, vol.8
, pp. 2150-2161
-
-
Gentile, G.1
Giuliano, L.2
D'Auria, G.3
Smedile, F.4
Azzaro, M.5
De Domenico, M.6
Yakimov, M.M.7
-
24
-
-
0025198752
-
Differential rates of digestion of bacteria by freshwater and marine phagotrophic protozoa
-
Gonzalez, J.M., Iriberri, J., Egea, L., and Barcina, I. (1990) Differential rates of digestion of bacteria by freshwater and marine phagotrophic protozoa. Appl Environ Microbiol 56: 1851-1857.
-
(1990)
Appl Environ Microbiol
, vol.56
, pp. 1851-1857
-
-
Gonzalez, J.M.1
Iriberri, J.2
Egea, L.3
Barcina, I.4
-
25
-
-
0033062746
-
The health effects of swimming in ocean water contaminated by storm drain runoff
-
Haile, R.W., Witte, J.S., Gold, M., Ron, C., McGee, C., Millikan, R.C., etal. (1999) The health effects of swimming in ocean water contaminated by storm drain runoff. Epidemiology 10: 355-363.
-
(1999)
Epidemiology
, vol.10
, pp. 355-363
-
-
Haile, R.W.1
Witte, J.S.2
Gold, M.3
Ron, C.4
McGee, C.5
Millikan, R.C.6
-
26
-
-
0037022294
-
The capsular polysaccharide of Enterococcus faecalis and its relationship to other polysaccharides in the cell wall
-
Hancock, L.E., and Gilmore, M.S. (2002) The capsular polysaccharide of Enterococcus faecalis and its relationship to other polysaccharides in the cell wall. Proc Natl Acad Sci USA 99: 1574-1579.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 1574-1579
-
-
Hancock, L.E.1
Gilmore, M.S.2
-
27
-
-
77956550816
-
Evaluation of genetic markers from the 16S rRNA gene V2 region for use in quantitative detection of selected Bacteroidales species and human fecal waste by qPCR
-
Haugland, R.A., Varma, M., Sivaganesan, M., Kelty, C., Peed, L., and Shanks, O.C. (2010) Evaluation of genetic markers from the 16S rRNA gene V2 region for use in quantitative detection of selected Bacteroidales species and human fecal waste by qPCR. Syst Appl Microbiol 33: 348-357.
-
(2010)
Syst Appl Microbiol
, vol.33
, pp. 348-357
-
-
Haugland, R.A.1
Varma, M.2
Sivaganesan, M.3
Kelty, C.4
Peed, L.5
Shanks, O.C.6
-
28
-
-
65249154313
-
Biphasic decay kinetics of fecal bacteria in surface water not a density effect
-
Hellweger, F.L., Bucci, V., Litman, M.R., Gu, A.Z., and Onnis-Hayden, A. (2009) Biphasic decay kinetics of fecal bacteria in surface water not a density effect. J Environ Eng 135: 372-376.
-
(2009)
J Environ Eng
, vol.135
, pp. 372-376
-
-
Hellweger, F.L.1
Bucci, V.2
Litman, M.R.3
Gu, A.Z.4
Onnis-Hayden, A.5
-
29
-
-
0033968474
-
Integration-proficient plasmids for Pseudomonas aeruginosa: site-specific integration and use for engineering of reporter and expression strains
-
Hoang, T.T., Kutchma, A.J., Becher, A., and Schweizer, H.P. (2000) Integration-proficient plasmids for Pseudomonas aeruginosa: site-specific integration and use for engineering of reporter and expression strains. Plasmid 43: 59-72.
-
(2000)
Plasmid
, vol.43
, pp. 59-72
-
-
Hoang, T.T.1
Kutchma, A.J.2
Becher, A.3
Schweizer, H.P.4
-
30
-
-
38349050376
-
Morphological plasticity as a bacterial survival strategy
-
Justice, S.S., Hunstad, D.A., Cegelski, L., and Hultgren, S.J. (2008) Morphological plasticity as a bacterial survival strategy. Nat Rev Microbiol 6: 162-168.
-
(2008)
Nat Rev Microbiol
, vol.6
, pp. 162-168
-
-
Justice, S.S.1
Hunstad, D.A.2
Cegelski, L.3
Hultgren, S.J.4
-
31
-
-
0037401010
-
Molecular methods for the assessment of bacterial viability
-
Keer, J.T., and Birch, L. (2003) Molecular methods for the assessment of bacterial viability. J Microbiol Methods 53: 175-183.
-
(2003)
J Microbiol Methods
, vol.53
, pp. 175-183
-
-
Keer, J.T.1
Birch, L.2
-
32
-
-
0027338308
-
Estimating the growth rate of slowly growing marine bacteria from RNA content
-
Kemp, P.F., Lee, S., and Laroche, J. (1993) Estimating the growth rate of slowly growing marine bacteria from RNA content. Appl Environ Microbiol 59: 2594-2601.
-
(1993)
Appl Environ Microbiol
, vol.59
, pp. 2594-2601
-
-
Kemp, P.F.1
Lee, S.2
Laroche, J.3
-
33
-
-
0027289343
-
Comparison of nucleic acid hybridization and fluorometry for measurement of the relationship between RNA/DNA ratio and growth rate in a marine bacterium
-
Kerkhof, L., and Ward, B.B. (1993) Comparison of nucleic acid hybridization and fluorometry for measurement of the relationship between RNA/DNA ratio and growth rate in a marine bacterium. Appl Environ Microbiol 59: 1303-1309.
-
(1993)
Appl Environ Microbiol
, vol.59
, pp. 1303-1309
-
-
Kerkhof, L.1
Ward, B.B.2
-
34
-
-
34547597968
-
16S rRNA-based assays for quantitative detection of universal, human-, cow-, and dog-specific fecal Bacteroidales: a Bayesian approach
-
Kildare, B.J., Leutenegger, C.M., McSwain, B.S., Bambic, D.G., Rajal, V.B., and Wuertz, S. (2007) 16S rRNA-based assays for quantitative detection of universal, human-, cow-, and dog-specific fecal Bacteroidales: a Bayesian approach. Water Res 41: 3701-3715.
-
(2007)
Water Res
, vol.41
, pp. 3701-3715
-
-
Kildare, B.J.1
Leutenegger, C.M.2
McSwain, B.S.3
Bambic, D.G.4
Rajal, V.B.5
Wuertz, S.6
-
35
-
-
79960775607
-
Inactivation of indicators and pathogens in cattle feedlot manures and compost as determined by molecular and culture assays
-
Klein, M., Brown, L., Ashbolt, N.J., Stuetz, R.M., and Roser, D.J. (2011) Inactivation of indicators and pathogens in cattle feedlot manures and compost as determined by molecular and culture assays. FEMS Microbiol Ecol 77: 200-210.
-
(2011)
FEMS Microbiol Ecol
, vol.77
, pp. 200-210
-
-
Klein, M.1
Brown, L.2
Ashbolt, N.J.3
Stuetz, R.M.4
Roser, D.J.5
-
36
-
-
0031714984
-
Persistence of PCR-detectable Bacteroides distasonis from human feces in river water
-
Kreader, C.A. (1998) Persistence of PCR-detectable Bacteroides distasonis from human feces in river water. Appl Environ Microbiol 64: 4103-4105.
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 4103-4105
-
-
Kreader, C.A.1
-
37
-
-
33745153077
-
Development of Bacteroides 16S rRNA gene TaqMan-based real-time PCR assays for estimation of total, human, and bovine fecal pollution in water
-
Layton, A., McKay, L., Williams, D., Garrett, V., Gentry, R., and Sayler, G. (2006) Development of Bacteroides 16S rRNA gene TaqMan-based real-time PCR assays for estimation of total, human, and bovine fecal pollution in water. Appl Environ Microbiol 72: 4214-4224.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 4214-4224
-
-
Layton, A.1
McKay, L.2
Williams, D.3
Garrett, V.4
Gentry, R.5
Sayler, G.6
-
38
-
-
40949084810
-
A discrete, stochastic model and correction method for bacterial source tracking
-
Leach, M.D., Broschat, S.L., and Call, D.R. (2007) A discrete, stochastic model and correction method for bacterial source tracking. Environ Sci Technol 42: 524-529.
-
(2007)
Environ Sci Technol
, vol.42
, pp. 524-529
-
-
Leach, M.D.1
Broschat, S.L.2
Call, D.R.3
-
39
-
-
33748744620
-
Evaluation of uncertainty in quantitative real-time PCR
-
Love, J.L., Scholes, P., Gilpin, B., Savill, M., Lin, S., and Samuel, L. (2006) Evaluation of uncertainty in quantitative real-time PCR. J Microbiol Methods 67: 349-356.
-
(2006)
J Microbiol Methods
, vol.67
, pp. 349-356
-
-
Love, J.L.1
Scholes, P.2
Gilpin, B.3
Savill, M.4
Lin, S.5
Samuel, L.6
-
40
-
-
0034488341
-
How quantitative is quantitative PCR with respect to cell counts?
-
Ludwig, W., and Schleifer, K.H. (2000) How quantitative is quantitative PCR with respect to cell counts? Syst Appl Microbiol 24: 556-562.
-
(2000)
Syst Appl Microbiol
, vol.24
, pp. 556-562
-
-
Ludwig, W.1
Schleifer, K.H.2
-
41
-
-
8644265908
-
Detection of Campylobacter spp. in chicken fecal samples by real-time PCR
-
Lund, M., Nordentoft, S., Pedersen, K., and Madsen, M. (2004) Detection of Campylobacter spp. in chicken fecal samples by real-time PCR. J Clin Microbiol 42: 5125-5132.
-
(2004)
J Clin Microbiol
, vol.42
, pp. 5125-5132
-
-
Lund, M.1
Nordentoft, S.2
Pedersen, K.3
Madsen, M.4
-
42
-
-
0019829418
-
Effect of solar radiation and predacious microorganisms on survival of fecal and other bacteria
-
McCambridge, J., and McMeekin, T.A. (1981) Effect of solar radiation and predacious microorganisms on survival of fecal and other bacteria. Appl Environ Microbiol 41: 1083-1087.
-
(1981)
Appl Environ Microbiol
, vol.41
, pp. 1083-1087
-
-
McCambridge, J.1
McMeekin, T.A.2
-
43
-
-
0028305450
-
Effect of stress treatments on the detection of Listeria monocytogenes and enterotoxigenic Escherichia coli by the polymerase chain reaction
-
Masters, C., Shallcross, J., and Mackey, B. (1994) Effect of stress treatments on the detection of Listeria monocytogenes and enterotoxigenic Escherichia coli by the polymerase chain reaction. J Appl Bacteriol 77: 73-79.
-
(1994)
J Appl Bacteriol
, vol.77
, pp. 73-79
-
-
Masters, C.1
Shallcross, J.2
Mackey, B.3
-
44
-
-
4644278476
-
Identification of members of the metabolically active microbial populations associated with Beggiatoa species Mat communities from Gulf of Mexico cold-seep sediments
-
Mills, H.J., Martinez, R.J., Story, S., and Sobecky, P.A. (2004) Identification of members of the metabolically active microbial populations associated with Beggiatoa species Mat communities from Gulf of Mexico cold-seep sediments. Appl Environ Microbiol 70: 5447-5458.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 5447-5458
-
-
Mills, H.J.1
Martinez, R.J.2
Story, S.3
Sobecky, P.A.4
-
45
-
-
20444365770
-
Characterization of microbial community structure in Gulf of Mexico gas hydrates: comparative analysis of DNA- and RNA-derived clone libraries
-
Mills, H.J., Martinez, R.J., Story, S., and Sobecky, P.A. (2005) Characterization of microbial community structure in Gulf of Mexico gas hydrates: comparative analysis of DNA- and RNA-derived clone libraries. Appl Environ Microbiol 71: 3235-3247.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 3235-3247
-
-
Mills, H.J.1
Martinez, R.J.2
Story, S.3
Sobecky, P.A.4
-
46
-
-
82555176073
-
-
NOAA Tides and currents. In Historical data for Garibaldi, OR, Station ID: 9437540. NOAA. Accessed May 28, 2011 <>.
-
NOAA (2011) Tides and currents. In Historical data for Garibaldi, OR, Station ID: 9437540. NOAA. Accessed May 28, 2011 <>.
-
(2011)
-
-
-
47
-
-
1542299670
-
Inactivation of indicator micro-organisms from various sources of faecal contamination in seawater and freshwater
-
Noble, R.T., Lee, I.M., and Schiff, K.C. (2004) Inactivation of indicator micro-organisms from various sources of faecal contamination in seawater and freshwater. J Appl Microbiol 96: 464-472.
-
(2004)
J Appl Microbiol
, vol.96
, pp. 464-472
-
-
Noble, R.T.1
Lee, I.M.2
Schiff, K.C.3
-
48
-
-
34548261775
-
Use of propidium monoazide for live/dead distinction in microbial ecology
-
Nocker, A., Sossa-Fernandez, P., Burr, M.D., and Camper, A.K. (2007) Use of propidium monoazide for live/dead distinction in microbial ecology. Appl Environ Microbiol 73: 5111-5117.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 5111-5117
-
-
Nocker, A.1
Sossa-Fernandez, P.2
Burr, M.D.3
Camper, A.K.4
-
49
-
-
0001437234
-
Degradation of dead microbial biomass in a marine sediment
-
Novitsky, J.A. (1986) Degradation of dead microbial biomass in a marine sediment. Appl Environ Microbiol 52: 504-509.
-
(1986)
Appl Environ Microbiol
, vol.52
, pp. 504-509
-
-
Novitsky, J.A.1
-
50
-
-
34548299909
-
Persistence of host-specific Bacteroides-Prevotella 16S rRNA genetic markers in environmental waters: effects of temperature and salinity
-
Okabe, S., and Shimazu, Y. (2007) Persistence of host-specific Bacteroides-Prevotella 16S rRNA genetic markers in environmental waters: effects of temperature and salinity. Appl Microbiol Biotechnol 76: 935-944.
-
(2007)
Appl Microbiol Biotechnol
, vol.76
, pp. 935-944
-
-
Okabe, S.1
Shimazu, Y.2
-
51
-
-
21344473000
-
Predation on prokaryotes in the water column and its ecological implications
-
Pernthaler, J. (2005) Predation on prokaryotes in the water column and its ecological implications. Nat Rev Microbiol 3: 537-546.
-
(2005)
Nat Rev Microbiol
, vol.3
, pp. 537-546
-
-
Pernthaler, J.1
-
52
-
-
0035344215
-
Predator-specific enrichment of Actinobacteria from a cosmopolitan freshwater clade in mixed continuous culture
-
Pernthaler, J., Posch, T., Simek, K., Vrba, J., Pernthaler, A., Glockner, F.O., etal. (2001) Predator-specific enrichment of Actinobacteria from a cosmopolitan freshwater clade in mixed continuous culture. Appl Environ Microbiol 67: 2145-2155.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 2145-2155
-
-
Pernthaler, J.1
Posch, T.2
Simek, K.3
Vrba, J.4
Pernthaler, A.5
Glockner, F.O.6
-
53
-
-
0027264175
-
Use of rRNA fluorescence in situ hybridization for measuring the activity of single cells in young and established biofilms
-
Poulsen, L.K., Ballard, G., and Stahl, D.A. (1993) Use of rRNA fluorescence in situ hybridization for measuring the activity of single cells in young and established biofilms. Appl Environ Microbiol 59: 1354-1360.
-
(1993)
Appl Environ Microbiol
, vol.59
, pp. 1354-1360
-
-
Poulsen, L.K.1
Ballard, G.2
Stahl, D.A.3
-
54
-
-
33845513534
-
Fingerprinting of Campylobacter jejuni by using resolution-optimized binary gene targets derived from comparative genome hybridization studies
-
Price, E.P., Huygens, F., and Giffard, P.M. (2006) Fingerprinting of Campylobacter jejuni by using resolution-optimized binary gene targets derived from comparative genome hybridization studies. Appl Environ Microbiol 72: 7793-7803.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 7793-7803
-
-
Price, E.P.1
Huygens, F.2
Giffard, P.M.3
-
55
-
-
34248181190
-
Microbial ecology of biological invasions
-
van der Putten, W.H., Klironomos, J.N., and Wardle, D.A. (2007) Microbial ecology of biological invasions. ISME J 1: 28-37.
-
(2007)
ISME J
, vol.1
, pp. 28-37
-
-
van der Putten, W.H.1
Klironomos, J.N.2
Wardle, D.A.3
-
56
-
-
54949087928
-
Bosque: integrated phylogenetic analysis software
-
Ramírez-Flandes, S., and Ulloa, O. (2008) Bosque: integrated phylogenetic analysis software. Bioinformatics 24: 2539-2541.
-
(2008)
Bioinformatics
, vol.24
, pp. 2539-2541
-
-
Ramírez-Flandes, S.1
Ulloa, O.2
-
57
-
-
0035472817
-
Direct and indirect effects of UV radiation on DNA and its components
-
Ravanat, J.-L., Douki, T., and Cadet, J. (2001) Direct and indirect effects of UV radiation on DNA and its components. J Photochem Photobiol B 63: 88-102.
-
(2001)
J Photochem Photobiol B
, vol.63
, pp. 88-102
-
-
Ravanat, J.-L.1
Douki, T.2
Cadet, J.3
-
58
-
-
34547476651
-
Quo vadis source tracking? Towards a strategic framework for environmental monitoring of fecal pollution
-
Santo Domingo, J.W., Bambic, D.G., Edge, T.A., and Wuertz, S. (2007) Quo vadis source tracking? Towards a strategic framework for environmental monitoring of fecal pollution. Water Res 41: 3539-3552.
-
(2007)
Water Res
, vol.41
, pp. 3539-3552
-
-
Santo Domingo, J.W.1
Bambic, D.G.2
Edge, T.A.3
Wuertz, S.4
-
59
-
-
0034530892
-
Microbial community dynamics in Mediterranean nutrient-enriched seawater mesocosms: changes in the genetic diversity of bacterial populations
-
Schäfer, H., Bernard, L., Courties, C., Lebaron, P., Servais, P., Pukall, R., etal. (2001) Microbial community dynamics in Mediterranean nutrient-enriched seawater mesocosms: changes in the genetic diversity of bacterial populations. FEMS Microbiol Ecol 34: 243-253.
-
(2001)
FEMS Microbiol Ecol
, vol.34
, pp. 243-253
-
-
Schäfer, H.1
Bernard, L.2
Courties, C.3
Lebaron, P.4
Servais, P.5
Pukall, R.6
-
60
-
-
79955579268
-
Fecal bacteroidales diversity and decay in response to variations in temperature and salinity
-
Schulz, C.J., and Childers, G.W. (2011) Fecal bacteroidales diversity and decay in response to variations in temperature and salinity. Appl Environ Microbiol 77: 2563-2572.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 2563-2572
-
-
Schulz, C.J.1
Childers, G.W.2
-
61
-
-
42149168057
-
Improved real-time PCR assays for the detection of fecal indicator bacteria in surface waters with different instrument and reagent systems
-
Seifring, S., Varma, M., Atikovic, E., Wymer, L., and Haugland, R. (2008) Improved real-time PCR assays for the detection of fecal indicator bacteria in surface waters with different instrument and reagent systems. J Water Health 6: 225-237.
-
(2008)
J Water Health
, vol.6
, pp. 225-237
-
-
Seifring, S.1
Varma, M.2
Atikovic, E.3
Wymer, L.4
Haugland, R.5
-
62
-
-
12744260019
-
Detection and quantification of the human-specific HF183 Bacteroides 16S rRNA genetic markers with realtime PCR for assessment of human fecal pollution in freshwater
-
Seurinck, S., Defoirdt, T., Verstraete, W., and Siciliano, S.D. (2005) Detection and quantification of the human-specific HF183 Bacteroides 16S rRNA genetic markers with realtime PCR for assessment of human fecal pollution in freshwater. Environ Microbiol 7: 249-259.
-
(2005)
Environ Microbiol
, vol.7
, pp. 249-259
-
-
Seurinck, S.1
Defoirdt, T.2
Verstraete, W.3
Siciliano, S.D.4
-
63
-
-
33747359916
-
Basin-wide analysis of the dynamics of fecal contamination and fecal source identification in Tillamook Bay, Oregon
-
Shanks, O.C., Nietch, C., Simonich, M., Younger, M., Reynolds, D., and Field, K.G. (2006) Basin-wide analysis of the dynamics of fecal contamination and fecal source identification in Tillamook Bay, Oregon. Appl Environ Microbiol 72: 5537-5546.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 5537-5546
-
-
Shanks, O.C.1
Nietch, C.2
Simonich, M.3
Younger, M.4
Reynolds, D.5
Field, K.G.6
-
64
-
-
38949210327
-
Quantitative PCR for detection and enumeration of genetic markers of bovine fecal pollution
-
Shanks, O.C., Atikovic, E., Blackwood, A.D., Lu, J., Noble, R.T., Domingo, J.S., etal. (2008) Quantitative PCR for detection and enumeration of genetic markers of bovine fecal pollution. Appl Environ Microbiol 74: 745-752.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 745-752
-
-
Shanks, O.C.1
Atikovic, E.2
Blackwood, A.D.3
Lu, J.4
Noble, R.T.5
Domingo, J.S.6
-
65
-
-
69449090107
-
Quantitative PCR for genetic markers of human fecal pollution
-
Shanks, O.C., Kelty, C.A., Sivaganesan, M., Varma, M., and Haugland, R.A. (2009) Quantitative PCR for genetic markers of human fecal pollution. Appl Environ Microbiol 75: 5507-5513.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 5507-5513
-
-
Shanks, O.C.1
Kelty, C.A.2
Sivaganesan, M.3
Varma, M.4
Haugland, R.A.5
-
66
-
-
71549131006
-
Concentrations of host-specific and generic fecal markers measured by quantitative PCR in raw sewage and fresh animal feces
-
Silkie, S.S., and Nelson, K.L. (2009) Concentrations of host-specific and generic fecal markers measured by quantitative PCR in raw sewage and fresh animal feces. Water Res 43: 4860-4871.
-
(2009)
Water Res
, vol.43
, pp. 4860-4871
-
-
Silkie, S.S.1
Nelson, K.L.2
-
67
-
-
0026615105
-
Direct and indirect evidence of size-selective grazing on pelagic bacteria by freshwater nanoflagellates
-
Simek, K., and Chrzanowski, T.H. (1992) Direct and indirect evidence of size-selective grazing on pelagic bacteria by freshwater nanoflagellates. Appl Environ Microbiol 58: 3715-3720.
-
(1992)
Appl Environ Microbiol
, vol.58
, pp. 3715-3720
-
-
Simek, K.1
Chrzanowski, T.H.2
-
68
-
-
0032812082
-
Sunlight inactivation of fecal bacteriophages and bacteria in sewage-polluted seawater
-
Sinton, L.W., Finlay, R.K., and Lynch, P.A. (1999) Sunlight inactivation of fecal bacteriophages and bacteria in sewage-polluted seawater. Appl Environ Microbiol 65: 3605-3613.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 3605-3613
-
-
Sinton, L.W.1
Finlay, R.K.2
Lynch, P.A.3
-
69
-
-
0036199306
-
Sunlight inactivation of fecal indicator bacteria and bacteriophages from waste stabilization pond effluent in fresh and saline waters
-
Sinton, L.W., Hall, C.H., Lynch, P.A., and Davies-Colley, R.J. (2002) Sunlight inactivation of fecal indicator bacteria and bacteriophages from waste stabilization pond effluent in fresh and saline waters. Appl Environ Microbiol 68: 1122-1131.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 1122-1131
-
-
Sinton, L.W.1
Hall, C.H.2
Lynch, P.A.3
Davies-Colley, R.J.4
-
70
-
-
0141739712
-
A Bayesian method of estimating kinetic parameters for the inactivation of Cryptosporidium parvum oocysts with chlorine dioxide and ozone
-
Sivaganesan, M., Rice, E.W., and Mariòas, B.J. (2003) A Bayesian method of estimating kinetic parameters for the inactivation of Cryptosporidium parvum oocysts with chlorine dioxide and ozone. Water Res 37: 4533-4543.
-
(2003)
Water Res
, vol.37
, pp. 4533-4543
-
-
Sivaganesan, M.1
Rice, E.W.2
Mariòas, B.J.3
-
71
-
-
42149119481
-
A Bayesian method for calculating real-time quantitative PCR calibration curves using absolute plasmid DNA standards
-
Sivaganesan, M., Seifring, S., Varma, M., Haugland, R., and Shanks, O. (2008) A Bayesian method for calculating real-time quantitative PCR calibration curves using absolute plasmid DNA standards. BMC Bioinformatics 9: 120.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 120
-
-
Sivaganesan, M.1
Seifring, S.2
Varma, M.3
Haugland, R.4
Shanks, O.5
-
72
-
-
55849114265
-
The coastal environment and human health: microbial indicators, pathogens, sentinels and reservoirs
-
Stewart, J., Gast, R., Fujioka, R., Solo-Gabriele, H., Meschke, J.S., Amaral-Zettler, L., etal. (2008) The coastal environment and human health: microbial indicators, pathogens, sentinels and reservoirs. Environ Health 7 (Suppl. 2): S3.
-
(2008)
Environ Health
, vol.7
, Issue.2 SUPPL.
-
-
Stewart, J.1
Gast, R.2
Fujioka, R.3
Solo-Gabriele, H.4
Meschke, J.S.5
Amaral-Zettler, L.6
-
73
-
-
67650494990
-
Involvement of cell surface structures in size-independent grazing resistance of freshwater actinobacteria
-
Tarao, M., Jezbera, J., and Hahn, M.W. (2009) Involvement of cell surface structures in size-independent grazing resistance of freshwater actinobacteria. Appl Environ Microbiol 75: 4720-4726.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 4720-4726
-
-
Tarao, M.1
Jezbera, J.2
Hahn, M.W.3
-
74
-
-
0033826796
-
Elements of a theory for the mechanisms controlling abundance, diversity, and biogeochemical role of lytic bacterial viruses in aquatic systems
-
Thingstad, T.F. (2000) Elements of a theory for the mechanisms controlling abundance, diversity, and biogeochemical role of lytic bacterial viruses in aquatic systems. Limnol Oceanogr 45: 1320-1328.
-
(2000)
Limnol Oceanogr
, vol.45
, pp. 1320-1328
-
-
Thingstad, T.F.1
-
75
-
-
0002058563
-
Theoretical models for the control of bacterial growth rate, abundance, diversity and carbon demand
-
Thingstad, T.F., and Lignell, R. (1997) Theoretical models for the control of bacterial growth rate, abundance, diversity and carbon demand. Aquat Microbiol Ecol 13: 19-27.
-
(1997)
Aquat Microbiol Ecol
, vol.13
, pp. 19-27
-
-
Thingstad, T.F.1
Lignell, R.2
-
76
-
-
82555170979
-
-
USEPA Microbial Source Tracking Guide Document. Office of Research and Development, Cincinnati, OH. Document number: EPA/600-R-05-064.
-
USEPA (2005) Microbial Source Tracking Guide Document. Office of Research and Development, Cincinnati, OH. Document number: EPA/600-R-05-064.
-
(2005)
-
-
-
77
-
-
82555201891
-
-
USGS National Water Information System: Web Interface. In: US Geological Survey.
-
USGS (2011) National Water Information System: Web Interface. In: US Geological Survey.
-
(2011)
-
-
-
78
-
-
30344450088
-
Rapidly measured indicators of recreational water quality are predictive of swimming-associated gastrointestinal illness
-
Wade, T.J., Calderon, R.L., Sams, E., Beach, M., Brenner, K.P., Williams, A.H., and Dufour, A.P. (2006) Rapidly measured indicators of recreational water quality are predictive of swimming-associated gastrointestinal illness. Environ Health Perspect 114: 24-28.
-
(2006)
Environ Health Perspect
, vol.114
, pp. 24-28
-
-
Wade, T.J.1
Calderon, R.L.2
Sams, E.3
Beach, M.4
Brenner, K.P.5
Williams, A.H.6
Dufour, A.P.7
-
79
-
-
69449102634
-
Monochloramine disinfection kinetics of Nitrosomonas europaea by propidium monoazide quantitative PCR and live/dead BacLight methods
-
Wahman, D.G., Wulfeck-Kleier, K.A., and Pressman, J.G. (2009) Monochloramine disinfection kinetics of Nitrosomonas europaea by propidium monoazide quantitative PCR and live/dead BacLight methods. Appl Environ Microbiol 75: 5555-5562.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 5555-5562
-
-
Wahman, D.G.1
Wulfeck-Kleier, K.A.2
Pressman, J.G.3
-
80
-
-
66649133470
-
Survival and persistence of human and ruminant-specific faecal Bacteroidales in freshwater microcosms
-
Walters, S., and Field, K. (2009) Survival and persistence of human and ruminant-specific faecal Bacteroidales in freshwater microcosms. Environ Microbiol 11: 1410-1421.
-
(2009)
Environ Microbiol
, vol.11
, pp. 1410-1421
-
-
Walters, S.1
Field, K.2
-
81
-
-
70350763183
-
Persistence of nucleic acid markers of health-relevant organisms in seawater microcosms: implications for their use in assessing risk in recreational waters
-
Walters, S.P., Yamahara, K.M., and Boehm, A.B. (2009) Persistence of nucleic acid markers of health-relevant organisms in seawater microcosms: implications for their use in assessing risk in recreational waters. Water Res 43: 4929-4939.
-
(2009)
Water Res
, vol.43
, pp. 4929-4939
-
-
Walters, S.P.1
Yamahara, K.M.2
Boehm, A.B.3
-
82
-
-
77957019131
-
Estimating true human and animal host source contribution in quantitative microbial source tracking using the Monte Carlo method
-
Wang, D., Silkie, S.S., Nelson, K.L., and Wuertz, S. (2010) Estimating true human and animal host source contribution in quantitative microbial source tracking using the Monte Carlo method. Water Res 44: 4760-4775.
-
(2010)
Water Res
, vol.44
, pp. 4760-4775
-
-
Wang, D.1
Silkie, S.S.2
Nelson, K.L.3
Wuertz, S.4
-
83
-
-
0030666834
-
Genetic diversity and expression of the [NiFe] hydrogenase large-subunit gene of Desulfovibrio spp. in environmental samples
-
Wawer, C., Jetten, M.S., and Muyzer, G. (1997) Genetic diversity and expression of the [NiFe] hydrogenase large-subunit gene of Desulfovibrio spp. in environmental samples. Appl Environ Microbiol 63: 4360-4369.
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 4360-4369
-
-
Wawer, C.1
Jetten, M.S.2
Muyzer, G.3
-
84
-
-
0026067797
-
16S ribosomal DNA amplification for phylogenetic study
-
Weisburg, W.G., Barns, S.M., Pelletier, D.A., and Lane, D.J. (1991) 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173: 697-703.
-
(1991)
J Bacteriol
, vol.173
, pp. 697-703
-
-
Weisburg, W.G.1
Barns, S.M.2
Pelletier, D.A.3
Lane, D.J.4
|