Bosque: Integrated phylogenetic analysis software

Bioinformatics

Volumn 24, Issue 21, 2008, Pages 2539-2541

  Ramírez Flandes, Salvador ^a   Ulloa, Osvaldo ^a  

^a UNIVERSITY OF CONCEPCIÓN   (Chile)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOINFORMATICS; CLIENT SERVER APPLICATION; COMPUTER NETWORK; COMPUTER PROGRAM; GENETIC DATABASE; MOLECULAR EVOLUTION; PHYLOGENETIC TREE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ALIGNMENT; TAXONOMY;

EID: 54949087928     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btn466     Document Type: Article

References (8)

1. Edgar,R.C. (2004) Muscle: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res., 32, 1792-1797.
2. Felsenstein,J. (2005) Phylip (Phylogeny Inference Package) version 3.6. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle.
3. Guindon,S. and Gascuel,O. (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol., 52, 696-704.
4. Katoh et al. (2002) MAFFT: A novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res., 30, 3059-3066.
5. Kumar,S. and Dudley,J. (2007) Bioinformatics software for biologists in the genomics era. Bioinformatics, 23, 1713-1717.
6. Posada,D. (2008) jModelTest: Phylogenetic model averaging. Mol. Biol. Evol., 25, 1253-1256.
7. Schmidt,H.A. et al. (2002) Tree-Puzzle: Maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics, 18, 502-504.
8. Talavera,G. and Castresana,J. (2007) Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Syst. Biol., 56, 564-577.