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Volumn 35, Issue SUPPL. 1, 2011, Pages

Regression and data mining methods for analyses of multiple rare variants in the Genetic Analysis Workshop 17 mini-exome data

(17)  Bailey Wilson, Joan E a   Brennan, Jennifer S b   Bull, Shelley B c,d   Culverhouse, Robert e   Kim, Yoonhee a   Jiang, Yuan b   Jung, Jeesun f   Li, Qing a   Lamina, Claudia g   Liu, Ying h   Mägi, Reedik i   Niu, Yue S j   Simpson, Claire L a   Wang, Libo k   Yilmaz, Yildiz E c,d   Zhang, Heping b   Zhang, Zhaogong l  


Author keywords

Binary trees; Classification trees; Extreme sampling; ISIS; LASSO; Logic regression; Machine learning; Meta analysis; Poisson regression; Random forests; Rare variants

Indexed keywords

VASCULOTROPIN A; VASCULOTROPIN RECEPTOR 1;

EID: 82455219111     PISSN: 07410395     EISSN: 10982272     Source Type: Journal    
DOI: 10.1002/gepi.20657     Document Type: Article
Times cited : (5)

References (30)
  • 2
    • 79959342076 scopus 로고    scopus 로고
    • Penalized methods for bi-level variable selection
    • Breheny P, Huang J. 2009. Penalized methods for bi-level variable selection. Stat Interface 2:369-380.
    • (2009) Stat Interface , vol.2 , pp. 369-380
    • Breheny, P.1    Huang, J.2
  • 3
    • 0035478854 scopus 로고    scopus 로고
    • Random forests
    • Breiman L. 2001. Random forests. Mach Learn 45:5-32.
    • (2001) Mach Learn , vol.45 , pp. 5-32
    • Breiman, L.1
  • 4
    • 82455194162 scopus 로고    scopus 로고
    • A LASSO-based approach to analyzing rare variants in genetic association studies
    • Brennan J, He Y, Calixte R, Nyirabahizi E, Jiang Y, Zhang H. 2011. A LASSO-based approach to analyzing rare variants in genetic association studies. BMC Proc 5:S100.
    • (2011) BMC Proc , vol.5
    • Brennan, J.1    He, Y.2    Calixte, R.3    Nyirabahizi, E.4    Jiang, Y.5    Zhang, H.6
  • 5
    • 78650128077 scopus 로고    scopus 로고
    • Discovering influential variables: a method of partitions
    • Chernoff H, Lo S, Zheng T. 2009. Discovering influential variables: a method of partitions. Ann Appl Stat 3:1335-1369.
    • (2009) Ann Appl Stat , vol.3 , pp. 1335-1369
    • Chernoff, H.1    Lo, S.2    Zheng, T.3
  • 6
    • 82455199409 scopus 로고    scopus 로고
    • Stratify or adjust? Dealing with multiple populations when evaluating rare variants
    • Culverhouse R, Hinrichs A, Suarez BK. 2011. Stratify or adjust? Dealing with multiple populations when evaluating rare variants. BMC Proc 5:S101.
    • (2011) BMC Proc , vol.5
    • Culverhouse, R.1    Hinrichs, A.2    Suarez, B.K.3
  • 7
    • 82455175511 scopus 로고    scopus 로고
    • Brief review of machine learning methods in genetic epidemiology: the Genetic Analysis Workshop 17 experience
    • this issue.
    • Dasgupta A, Sun YV, König IR, Bailey-Wilson JE, Malley JD. 2011. Brief review of machine learning methods in genetic epidemiology: the Genetic Analysis Workshop 17 experience. Genet Epidemiol, this issue.
    • (2011) Genet Epidemiol
    • Dasgupta, A.1    Sun, Y.V.2    König, I.R.3    Bailey-Wilson, J.E.4    Malley, J.D.5
  • 8
    • 82455192533 scopus 로고    scopus 로고
    • Statistical analysis of rare sequence variants: an overview of collapsing methods
    • this issue.
    • Dering C, Hemmelmann C, Pugh E, Ziegler A. 2011. Statistical analysis of rare sequence variants: an overview of collapsing methods. Genet Epidemiol, this issue.
    • (2011) Genet Epidemiol
    • Dering, C.1    Hemmelmann, C.2    Pugh, E.3    Ziegler, A.4
  • 11
    • 82455199416 scopus 로고    scopus 로고
    • Identification of multiple rare variants associated with a disease
    • Jung J, Dantzer J, Liu Y. 2011. Identification of multiple rare variants associated with a disease. BMC Proc 5:S103.
    • (2011) BMC Proc , vol.5
    • Jung, J.1    Dantzer, J.2    Liu, Y.3
  • 14
    • 82455170369 scopus 로고    scopus 로고
    • Digging into the extremes: a useful approach for the analysis of rare variants with continuous traits?
    • Lamina C. 2011. Digging into the extremes: a useful approach for the analysis of rare variants with continuous traits? BMC Proc 5:S105.
    • (2011) BMC Proc , vol.5
    • Lamina, C.1
  • 15
    • 50949095168 scopus 로고    scopus 로고
    • Methods for detecting associations with rare variants for common diseases: application to analysis of sequence data
    • Li B, Leal SM. 2008. Methods for detecting associations with rare variants for common diseases: application to analysis of sequence data. Am J Hum Genet 83:311-321.
    • (2008) Am J Hum Genet , vol.83 , pp. 311-321
    • Li, B.1    Leal, S.M.2
  • 16
    • 82455173749 scopus 로고    scopus 로고
    • Association screening for genes with multiple potentially rare variants: an inverse-probability weighted clustering approach
    • Liu Y, Huang CH, Hu I, Lo S-H, Zheng T. 2011. Association screening for genes with multiple potentially rare variants: an inverse-probability weighted clustering approach. BMC Proc 5:S106.
    • (2011) BMC Proc , vol.5
    • Liu, Y.1    Huang, C.H.2    Hu, I.3    Lo, S.-H.4    Zheng, T.5
  • 17
    • 84860916888 scopus 로고    scopus 로고
    • Assessing the impact of missing genotype data in rare variant association analysis
    • Mägi R, Kumar A, Morris A. 2011. Assessing the impact of missing genotype data in rare variant association analysis. BMC Proc 5:S107.
    • (2011) BMC Proc , vol.5
    • Mägi, R.1    Kumar, A.2    Morris, A.3
  • 18
    • 76649136928 scopus 로고    scopus 로고
    • An evaluation of statistical approaches to rare variant analysis in genetic association studies
    • Morris AP, Zeggini E. 2010. An evaluation of statistical approaches to rare variant analysis in genetic association studies. Genet Epidemiol 34:188-193.
    • (2010) Genet Epidemiol , vol.34 , pp. 188-193
    • Morris, A.P.1    Zeggini, E.2
  • 20
    • 82455199403 scopus 로고    scopus 로고
    • Detection of rare functional variants using group ISIS
    • Niu YS, Hao N, An L. 2011. Detection of rare functional variants using group ISIS. BMC Proc 5:S108.
    • (2011) BMC Proc , vol.5
    • Niu, Y.S.1    Hao, N.2    An, L.3
  • 23
    • 12744255343 scopus 로고    scopus 로고
    • Exploring interactions in high dimensional genomic data: an overview of logic regression, with applications
    • Ruczinski I, Kooperberg C, LeBlanc M. 2004. Exploring interactions in high dimensional genomic data: an overview of logic regression, with applications. J Multivar Anal 90:178-195.
    • (2004) J Multivar Anal , vol.90 , pp. 178-195
    • Ruczinski, I.1    Kooperberg, C.2    LeBlanc, M.3
  • 24
    • 82455199406 scopus 로고    scopus 로고
    • Application of Bayesian network structure learning to identify causal variant SNPs from resequencing data
    • Schlosberg CE, Schwantes-An T-H, Duan W, Saccone N. 2011. Application of Bayesian network structure learning to identify causal variant SNPs from resequencing data. BMC Proc 5:S109.
    • (2011) BMC Proc , vol.5
    • Schlosberg, C.E.1    Schwantes-An, T.-H.2    Duan, W.3    Saccone, N.4
  • 25
    • 82455194155 scopus 로고    scopus 로고
    • Genome-wide case-control study in GAW17 using coalesced rare variants
    • Wang L, Pungpapong V, Lin Y, Zhang M, Zhang D. 2011. Genome-wide case-control study in GAW17 using coalesced rare variants. BMC Proc 5:S110.
    • (2011) BMC Proc , vol.5
    • Wang, L.1    Pungpapong, V.2    Lin, Y.3    Zhang, M.4    Zhang, D.5
  • 26
    • 82455175480 scopus 로고    scopus 로고
    • Lessons learned from the Genetic Analysis Workshop 17: transitioning from genome-wide association studies to whole-genome statistical genetic analysis
    • this issue.
    • Wilson AF, Ziegler A. 2011. Lessons learned from the Genetic Analysis Workshop 17: transitioning from genome-wide association studies to whole-genome statistical genetic analysis. Genet Epidemiol, this issue.
    • (2011) Genet Epidemiol
    • Wilson, A.F.1    Ziegler, A.2
  • 27
    • 82455173763 scopus 로고    scopus 로고
    • Are quantitative trait-dependent sampling designs cost-effective for analysis of rare and common variants?
    • Yilmaz YE, Bull SB. 2011. Are quantitative trait-dependent sampling designs cost-effective for analysis of rare and common variants? BMC Proc 5:S111.
    • (2011) BMC Proc , vol.5
    • Yilmaz, Y.E.1    Bull, S.B.2
  • 28
    • 71249139955 scopus 로고    scopus 로고
    • Penalized orthogonal-components regression for large p, small n data
    • Zhang D, Lin Y, Zhang M. 2009. Penalized orthogonal-components regression for large p, small n data. Electron J Stat 3:781-796.
    • (2009) Electron J Stat , vol.3 , pp. 781-796
    • Zhang, D.1    Lin, Y.2    Zhang, M.3
  • 29
    • 82455194153 scopus 로고    scopus 로고
    • Detection of rare variant effects in association studies: extreme values, iterative regression, and a hybrid approach
    • Zhang Z, Sha Q, Wang X, Zhang S. 2011. Detection of rare variant effects in association studies: extreme values, iterative regression, and a hybrid approach. BMC Proc 5:S112.
    • (2011) BMC Proc , vol.5
    • Zhang, Z.1    Sha, Q.2    Wang, X.3    Zhang, S.4
  • 30
    • 82455194167 scopus 로고    scopus 로고
    • Discovering influential variables: a general computer intensive method for common genetic disorders
    • In: Lu H, Scholkopf B, Zhao H, editors. . New York: Springer.
    • Zheng T, Chernoff H, Hu I, Ionita-Laza I, Lo S. 2010. Discovering influential variables: a general computer intensive method for common genetic disorders. In: Lu H, Scholkopf B, Zhao H, editors. Handbook of Computational Statistics: Statistical Bioinformatics. New York: Springer.
    • (2010) Handbook of Computational Statistics: Statistical Bioinformatics
    • Zheng, T.1    Chernoff, H.2    Hu, I.3    Ionita-Laza, I.4    Lo, S.5


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