Phylogeny of Powellomycetaceae fam. nov. and description of Geranomyces variabilis gen. et comb. nov

Mycologia

Volumn 103, Issue 6, 2011, Pages 1411-1420

  Simmons, D Rabern ^a  

^a UNIVERSITY OF MAINE   (United States)

Author keywords

Chytrid; Chytridiomycetes; EFL; Nuclsu rDNA; Nucssu rDNA; Spizellomycetales; Zoospore ultrastructure

Indexed keywords

EVOLUTIONARY BIOLOGY; FUNGUS; MANURE; NEW GENUS; NEW SPECIES; PHYLOGENETICS; PHYLOGENY; PHYTODETRITUS; POLLEN;

ARTICLE; CLASSIFICATION; FUNGUS; PHYLOGENY; ULTRASTRUCTURE;

FUNGI; PHYLOGENY;

EID: 82455188727     PISSN: 00275514     EISSN: 15572536     Source Type: Journal    
DOI: 10.3852/11-039     Document Type: Article

References (41)

1. Barr DJS. 1971. Morphology and taxonomy of Entophlyctis confervae-glomeratae (Chytridiales) and related species. Can J Bot 49:2215-2222.
2. Barr DJS. 1980. An outline for the reclassification of the Chytridiales, and for a new order, the Spizellomycetales. Can J Bot 58:2380-2394.
3. Barr DJS. 1981. Ultrastructure of the Gaertneriomyces zoospore (Spizellomycetales, Chytridiomycetes). Can J Bot 59:83-90.
4. Barr DJS. 1984a. The classification of Spizellomyces, Gaertneriomyces, Triparticalcar and Kochiomyces (Spizellomycetales, Chytridiomycetes). Can J Bot 62:1171-1201.
5. Barr DJS. 1984b. Cytological variation in zoospores of Spizellomyces (Chytridiomycetes). Can J Bot 62:1202. 1208.
6. Barr DJS. 1986. Allochytridium expandens rediscovered: morphology, physiology and zoospore ultrastructure. Mycologia 78:439-448.
7. Barr DJS. 1987. Isolation, culture and identification of Chytridiales, Spizellomycetales and Hyphochytriales. In: Fuller MS, Jaworski A, eds. Zoosporic fungi in teaching and research. Athens, Georgia: Southeastern Publishing Corp. p 118-120.
8. Barr DJS. 2001. Chytridiomycota. In: McLaughlin DJ, McLaughlin EG, Lemke PA, eds. The Mycota VII. Systematics and Evolution Part A. New York: Springer-Verlag. p 93-112.
9. Booth T. 1971. Problematic taxonomic criteria in the Chytridiales: comparative morphology of 10 Entophlyctis sp. isolates. Can J Bot 49:977-987.
10. Borman AM, Linton CJ, Miles S, Campbell CK, Johnson EM. 2006. Ultra-rapid preparation of total genomic DNA from isolates of yeast and mould using Whatman FTA filter paper technology-a reusable DNA archiving system. Med Mycol 44:389-398.
11. Cejp K. 1959. Contribution to the knowledge of the keratinophilic Phycomycetes. In: Omagiu lui Traian Savulescu cu prilejul implinirii a 70 de ani. Academia Republicii Populare Romani. p 129-138.
12. Chong J, Barr DJS. 1974. Ultrastructure of the zoospores of Entophlyctis confervae-glomeratae, Rhizophydium patellarium and Catenaria anguillulae. Can J Bot 52:1197-1204.
13. Drummond AJ, Ashton B, Buxton S, Cheung M, Cooper A, Heled J, Kearse M, Moir R, Stones-Havas S, Sturrock S, Thierer T, Wilson A. 2010. Geneious 5.1. Biomatters Ltd.
14. Guindon S, Gascuel O. 2003. A simple, fast and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52:696-704.
15. Hibbett DS, Binder M, Bischoff JF, Blackwell M, Cannon PF, Eriksson OE, Huhndorf S, James T, Kirk PM, Lücking R, Lumbsch HT, Lutzoni F, Matheny PB, McLaughlin DJ, Powell MJ, Redhead S, Schoch CL, Spatafora JW, Stalpers JA, Vilgalys R, Aime MC, Aptroot A, Bauer R, Begerow D, Benny GL, Castlebury LA, Crous PW, Dai Y, Gams W, Geiser DM, Griffith GW, Gueidan C, Hawksworth DL, Hestmark G, Hosaka K, Humber RA, Hyde KD, Ironside JE, Kõljalg U, Kurtzman CP, Larsson K, Lichtwardt R, Longcore J, Mia{ogonek}dlikowska J, Miller A, Moncalvo J, Mozley-Standridge S, Oberwinkler F, Parmasto E, Reeb V, Rogers JD, Roux C, Ryvarden L, Sampaio JP, Schüßler A, Sugiyama J, Thorn RG, Tibell L, Untereiner WA, Walker C, Wang Z, Weir A, Weiss M, White MM, Winka K, Yao Y, Zhang N. 2007. A higherlevel phylogenetic classification of the Fungi. Mycol Res 111:509.547.
16. James TY, Kauff F, Schoch CL, Matheny PB, Hofstetter V, Cox CJ, Celio G, Gueidan C, Fraker E, Miadlikowska J, Lumbsch HT, Rauhut A, Reeb V, Arnold AE, Amtoft A, Stajich JE, Hosaka K, Sung G, Johnson D, O'Rourke B, Crockett M, Binder M, Curtis JM, Slot JC, Wang Z, Wilson AW, Schüßler A, Longcore JE, O'Donnell K, Mozley-Standridge S, Porter D, Letcher PM, Powell MJ, Taylor JW, White MM, Griffith GW, Davies DR, Humber RA, Morton JB, Sugiyama J, Rossman AY, Rogers JD, Pfister DH, Hewitt D, Hansen K, Hambleton S, Shoemaker RA, Kohlmeyer J, Volkmann-Kohlmeyer B, Spotts RA, Serdani M, Crous PW, Hughes KW, Matsuura K, Langer E, Langer G, Untereiner WA, Lücking R, Büdel B, Geiser DM, Aptroot A, Diederich P, Schmitt I, Schultz M, Yahr R, Hibbett DS, Lutzoni F, McLaughlin DJ, Spatafora JW, Vilgalys R. 2006a. Reconstructing the early evolution of Fungi using a six-gene phylogeny. Nature 443:818-822.
17. James TY, Letcher PM, Longcore JE, Mozley-Standridge SE, Porter D, Powell MJ, Griffith GW, Vilgalys R. 2006b. A molecular phylogeny of the flagellated fungi (Chytridiomycota) and description of a new phylum (Blastocladiomycota). Mycologia 98:860-871.
18. James TY, Porter D, Leander CA, Vilgalys R, Longcore JE. 2000. Molecular phylogenetics of the Chytridiomycota support the utility of ultrastructural data in chytrid systematics. Can J Bot 78:336-350.
19. Karling JS. 1977. Chytridiomycetarum iconographia. Monticello, New York: Lubrecht & Cramer. 414 p.
20. Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG. 2007. Clustal W and Clustal X. Version 2.0. Bioinformatics 23: 2947-2948.
21. Letcher PM, Powell MJ. 2005. Kappamyces, a new genus in the Chytridiales (Chytridiomycota). Nova Hedwig 80: 115-133.
22. Letcher PM, Powell MJ, Barr DJS, Churchill WS, Picard KT. 2008a. Rhizophlyctidales-a new order in Chytridiomycota. Mycol Res 112:1031-1048.
23. Letcher PM, Powell MJ, Chambers JG, Longcore JE, Churchill PF, Harris PM. 2005. Ultrastructural and molecular delineation of the Chytridaceae (Chytridiales). Can J Bot 83: 1561-1573.
24. Letcher PM, Powell MJ, Churchill PF, Chambers JG. 2006. Ultrastructural and molecular phylogenetic delineation of a new order, the Rhizophydiales (Chytridiomycota). Mycol Res 110:898-915.
25. Letcher PM, Vélez CG, Barrantes ME, Powell MJ, Churchill PF, Wakefield WS. 2008b. Ultrastructural and molecular analyses of Rhizophydiales (Chytridiomycota) isolates from North America and Argentina. Mycol Res 112: 759-782.
26. Longcore JE. 1992. Morphology, occurrence and zoospore ultrastructure of Podochytrium dentatum sp. nov. (Chytridiales). Mycologia 84:183-192.
27. Longcore JE. 1995. Morphology and zoospore ultrastructure of Entophlyctis luteolus sp. nov. (Chytridiales): implications for chytrid taxonomy. Mycologia 87:25-33.
28. Longcore JE, Barr DJS, Désaulniers N. 1995. Powellomyces, a new genus in the Spizellomycetales. Can J Bot 73:1385-1390.
29. Mozley-Standridge SE, Letcher PM, Longcore JE, Porter D, Simmons DR. 2009. Cladochytriales-a new order in Chytridiomycota. Mycol Res 113:498-507.
30. Nicholas KB, Nicholas HB. 1997. GeneDoc: a tool for editing and annotating multiple sequence alignments.
31. Posada D. 2008. jModeltest: phylogenetic model averaging. Mol Biol Evol 25:1253-1256.
32. Powell MJ. 1976. Ultrastructure and isolation of glyoxysomes (microbodies) in zoospores of the fungus Entophlyctis sp. Protoplasma 89:1-27.
33. Powell MJ, Koch WJ. 1977. Morphological variations in a new species of Entophlyctis I. The species concept. Can J Bot 55:1668-1685.
34. Rehner SA, Samuels GJ. 1994. Taxonomy and phylogeny of Gliocladium analysed from nuclear large subunit ribosomal DNA sequences. Mycol Res 98:625-634.
35. Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574.
36. Simmons DR, James TY, Meyer AF, Longcore JE. 2009. Lobulomycetales, a new order in Chytridiomycota. Mycol Res 113:450-460.
37. Sparrow FK. 1960. Aquatic Phycomycetes. 2nd ed. Ann Arbor, Michigan: Univ Michigan Press. 1187 p.
38. Swofford DL. 2002. PAUP*4.0b10: phylogenetic analysis using parsimony (*and other methods). Sunderland, Massachusetts: Sinauer Associates.
39. Vilgalys R, Hester M. 1990. Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. J Bacteriol 172:4238-4246.
40. Wakefield WS, Powell MJ, Letcher PM, Barr DJS, Churchill PF, Longcore JE, Chen S. 2010. A molecular phylogenetic evaluation of the Spizellomycetales. Mycologia 102:596-604.
41. White TJ, Bruns TD, Lee SB, Taylor JW. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR protocols: a guide to methods and applications. San Diego, California: Academic Press. p 315-322.