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Volumn 44, Issue 5, 2006, Pages 389-398

Ultra-rapid preparation of total genomic DNA from isolates of yeast and mould using Whatman FTA filter paper technology - A reusable DNA archiving system

Author keywords

FTA matrix; Fungi; Genomic DNA; Mould; PCR; Yeast

Indexed keywords

FUNGAL DNA; INTERNAL TRANSCRIBED SPACER 1;

EID: 33746802427     PISSN: 13693786     EISSN: 14602709     Source Type: Journal    
DOI: 10.1080/13693780600564613     Document Type: Article
Times cited : (55)

References (27)
  • 1
    • 84907129549 scopus 로고    scopus 로고
    • Rapid detection and identification of pathogenic fungi by polymerase chain reaction amplification of large subunit ribosomal DNA
    • Haynes, K and Westerneng, T and Fell, J and Moens, W. (1996) Rapid detection and identification of pathogenic fungi by polymerase chain reaction amplification of large subunit ribosomal DNA J Med Vet Mycol, 33, pp. 319-325.
    • (1996) J Med Vet Mycol , vol.33 , pp. 319-325
    • Haynes, K.1    Westerneng, T.2    Fell, J.3    Moens, W.4
  • 2
    • 0028260525 scopus 로고
    • Detection of a wide range of medically important fungi by polymerase chain reaction
    • Makimura, K and Murayama, SY and Yamaguchi, H. (1994) Detection of a wide range of medically important fungi by polymerase chain reaction J Med Microbiol, 40, pp. 358-364.
    • (1994) J Med Microbiol , vol.40 , pp. 358-364
    • Makimura, K.1    Murayama, S.Y.2    Yamaguchi, H.3
  • 4
    • 0027331620 scopus 로고
    • The detections of Aspergillus spp. by the polymerase chain reaction and its evaluation of bronchealveolar lavage fluid
    • Tang, C and Holden, D and Aufauvre-Brown, A and Cohen, J. (1993) The detections of Aspergillus spp. by the polymerase chain reaction and its evaluation of bronchealveolar lavage fluid Am Rev Respir Dis, 148, pp. 1313-1317.
    • (1993) Am Rev Respir Dis , vol.148 , pp. 1313-1317
    • Tang, C.1    Holden, D.2    Aufauvre-Brown, A.3    Cohen, J.4
  • 5
    • 85032069466 scopus 로고    scopus 로고
    • A simple method for extraction of fungal genomic DNA
    • Al-Samarrai, TH and Schmid, J. (2000) A simple method for extraction of fungal genomic DNA Lett Appl Microbiol, 30, pp. 53-56.
    • (2000) Lett Appl Microbiol , vol.30 , pp. 53-56
    • Al-Samarrai, T.H.1    Schmid, J.2
  • 6
    • 0026519029 scopus 로고
    • Rapid extraction of fungal DNA for PCR amplification
    • Cenis, JL. (1992) Rapid extraction of fungal DNA for PCR amplification Nucl Acids Res, 20, pp. 2380.
    • (1992) Nucl Acids Res , vol.20 , pp. 2380
    • Cenis, J.L.1
  • 7
    • 1142285316 scopus 로고    scopus 로고
    • A rapid DNA extraction method for PCR identification of fungal indoor air contaminants
    • Dean, TR and Betancourt, D and Menetrez, MY. (2004) A rapid DNA extraction method for PCR identification of fungal indoor air contaminants J Microbiol Methods, 56, pp. 431-434.
    • (2004) J Microbiol Methods , vol.56 , pp. 431-434
    • Dean, T.R.1    Betancourt, D.2    Menetrez, M.Y.3
  • 8
    • 13844298349 scopus 로고    scopus 로고
    • Use of magnetic beads to extract fungal DNA
    • Faggi, E and Pini, G and Campisi, E. (2005) Use of magnetic beads to extract fungal DNA Mycoses, 48, pp. 3-7.
    • (2005) Mycoses , vol.48 , pp. 3-7
    • Faggi, E.1    Pini, G.2    Campisi, E.3
  • 9
    • 13844267326 scopus 로고    scopus 로고
    • Rapid and efficient extraction of genomic DNA from different phytopathogenic fungi using DNAzol reagent
    • Guo, JR and Schneider, F and Abd-Elsalam, KA and Vereet, JA. (2005) Rapid and efficient extraction of genomic DNA from different phytopathogenic fungi using DNAzol reagent Biotechnol Lett, 27, pp. 3-6.
    • (2005) Biotechnol Lett , vol.27 , pp. 3-6
    • Guo, J.R.1    Schneider, F.2    Abd-Elsalam, K.A.3    Vereet, J.A.4
  • 10
    • 84907124085 scopus 로고
    • Detection and differentiation of fungi in clinical specimens using polymerase chain recation amplification and restriction enzyme analysis
    • Hopfer, RL and Walden, P and Setterquist, S and Highsmith, WE. (1993) Detection and differentiation of fungi in clinical specimens using polymerase chain recation amplification and restriction enzyme analysis J Med Vet Mycol, 31, pp. 65-75.
    • (1993) J Med Vet Mycol , vol.31 , pp. 65-75
    • Hopfer, R.L.1    Walden, P.2    Setterquist, S.3    Highsmith, W.E.4
  • 11
    • 4644226919 scopus 로고    scopus 로고
    • Simple chemical extraction method for DNA isolation from Aspergillus fumigatus and other Aspergillus species
    • Jin, J and Lee, Y-K and Wickes, BL. (2004) Simple chemical extraction method for DNA isolation from Aspergillus fumigatus and other Aspergillus species J Clin Microbiol, 42, pp. 4293-4296.
    • (2004) J Clin Microbiol , vol.42 , pp. 4293-4296
    • Jin, J.1    Lee, Y.-K.2    Wickes, B.L.3
  • 12
    • 2642626628 scopus 로고    scopus 로고
    • Rapid extraction of genomic DNA from medically important yeasts and filamentous fungi by high-speed cell disruption
    • Muller, F-MC and Werner, KE and Kasai, M and (1998) Rapid extraction of genomic DNA from medically important yeasts and filamentous fungi by high-speed cell disruption J Clin Microbiol, 36, pp. 1625-1629.
    • (1998) J Clin Microbiol , vol.36 , pp. 1625-1629
    • Muller, F-M.C.1    Werner, K.E.2    Kasai, M.3
  • 13
    • 33746400062 scopus 로고    scopus 로고
    • Comparison of six extraction techniques for isolation of DNA from filamentous fungi
    • Van Burik, JA and Schreckhise, RW and White, TC and Bowden, RA and Myerson, D. (1998) Comparison of six extraction techniques for isolation of DNA from filamentous fungi Med Mycol, 36, pp. 299-303.
    • (1998) Med Mycol , vol.36 , pp. 299-303
    • Van Burik, J.A.1    Schreckhise, R.W.2    White, T.C.3    Bowden, R.A.4    Myerson, D.5
  • 14
    • 0034081304 scopus 로고    scopus 로고
    • Application of PCR to the identification of dermatophyte fungi
    • Liu, D and Coloe, S and Baird, R and Pederson, J. (2000) Application of PCR to the identification of dermatophyte fungi J Med Microbiol, 49, pp. 493-497.
    • (2000) J Med Microbiol , vol.49 , pp. 493-497
    • Liu, D.1    Coloe, S.2    Baird, R.3    Pederson, J.4
  • 15
    • 3843099355 scopus 로고    scopus 로고
    • Persistence of human immunodeficiency virus type I subtype B DNA in dried-blood samples on FTA filter paper
    • Li, CC and Beck, IA and Seidel, KD and Frenkel, LM. (2004) Persistence of human immunodeficiency virus type I subtype B DNA in dried-blood samples on FTA filter paper J Clin Microbiol, 42, pp. 3847-3849.
    • (2004) J Clin Microbiol , vol.42 , pp. 3847-3849
    • Li, C.C.1    Beck, I.A.2    Seidel, K.D.3    Frenkel, L.M.4
  • 16
    • 0033779658 scopus 로고    scopus 로고
    • Improved template preparation for PCR-based assays for the detection of food-borne pathogens
    • Lampel, KA and Orlandi, PA and Kornegay, L. (2000) Improved template preparation for PCR-based assays for the detection of food-borne pathogens Appl Environ Microbiol, 66, pp. 4539-4542.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 4539-4542
    • Lampel, K.A.1    Orlandi, P.A.2    Kornegay, L.3
  • 17
    • 2442475329 scopus 로고    scopus 로고
    • Detection of Bacillus spores using PCR and FTA filters
    • Lampel, KA and Dyer, D and Kornegay, L and Orlandi, PA. (2004) Detection of Bacillus spores using PCR and FTA filters J Food Prot, 67, pp. 1036-1038.
    • (2004) J Food Prot , vol.67 , pp. 1036-1038
    • Lampel, K.A.1    Dyer, D.2    Kornegay, L.3    Orlandi, P.A.4
  • 18
    • 11244292606 scopus 로고    scopus 로고
    • Inactivation, storage and PCR detection of Mycoplasma on FTA filter paper
    • Moscoso, H and Thayer, SG and Hofacre, CL and Kleven, SH. (2004) Inactivation, storage and PCR detection of Mycoplasma on FTA filter paper Avian Dis, 48, pp. 841-850.
    • (2004) Avian Dis , vol.48 , pp. 841-850
    • Moscoso, H.1    Thayer, S.G.2    Hofacre, C.L.3    Kleven, S.H.4
  • 19
    • 17444420845 scopus 로고    scopus 로고
    • Large-scale general collection of wild-plant DNA in Mustang
    • Tsukaya, H and Iokawa, Y and Kondo, M and Ohba, H. (2005) Large-scale general collection of wild-plant DNA in Mustang Nepal J Plant Res, 118, pp. 57-60.
    • (2005) Nepal J Plant Res , vol.118 , pp. 57-60
    • Tsukaya, H.1    Iokawa, Y.2    Kondo, M.3    Ohba, H.4
  • 20
    • 0043066617 scopus 로고    scopus 로고
    • A novel method for the transport and analysis of genetic material from polyps and zooxanthellae of scleractinian corals
    • Crabbe, MJ. (2003) A novel method for the transport and analysis of genetic material from polyps and zooxanthellae of scleractinian corals J Biochem Biophys Methods, 29, pp. 171-176.
    • (2003) J Biochem Biophys Methods , vol.29 , pp. 171-176
    • Crabbe, M.J.1
  • 21
    • 2942685477 scopus 로고    scopus 로고
    • A rapid and simple method of detection of Blepharisma japonicum using PCR and immobilisation on FTA paper
    • Hide, G and Hughes, JM and McNuff, R. (2003) A rapid and simple method of detection of Blepharisma japonicum using PCR and immobilisation on FTA paper BMC Ecol, 3, pp. 7.
    • (2003) BMC Ecol , vol.3 , pp. 7
    • Hide, G.1    Hughes, J.M.2    McNuff, R.3
  • 22
    • 0038651084 scopus 로고    scopus 로고
    • Microsatellite analysis of cryopreserved stallion semen stored on FTA paper
    • Schulman, ML and Harper, CK and Bell, E and Nel, A and Guthrie, AJ. (2002) Microsatellite analysis of cryopreserved stallion semen stored on FTA paper J S Afr Vet Assoc, 73, pp. 222-223.
    • (2002) J S Afr Vet Assoc , vol.73 , pp. 222-223
    • Schulman, M.L.1    Harper, C.K.2    Bell, E.3    Nel, A.4    Guthrie, A.J.5
  • 23
    • 2942615340 scopus 로고    scopus 로고
    • Collecting, archiving and processing DNA from wildlife samples using FTA databasing paper
    • Smith, LM and Burgoyne, LA. (2004) Collecting, archiving and processing DNA from wildlife samples using FTA databasing paper BMC Ecol, 4, pp. 4.
    • (2004) BMC Ecol , vol.4 , pp. 4
    • Smith, L.M.1    Burgoyne, L.A.2
  • 24
    • 0000432452 scopus 로고
    • Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
    • In San Diego: Academic Press
    • White, TJ and Burns, T and Lee, S and Taylor, J.(1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In PCR Protocols: A Guide to Methods and Applications. (pp. 315-322). San Diego: Academic Press.
    • (1990) PCR Protocols: A Guide to Methods and Applications , pp. 315-322
    • White, T.J.1    Burns, T.2    Lee, S.3    Taylor, J.4
  • 25
    • 0031459474 scopus 로고    scopus 로고
    • Relatedness of Pseudallescheria, Scedosporium and Graphium pro parte based on SSU rDNA sequences
    • Issakainen, J and Jalava, J and Eerola, E and Campbell, CK. (1997) Relatedness of Pseudallescheria, Scedosporium and Graphium pro parte based on SSU rDNA sequences J Med Vet Mycol, 35, pp. 389-398.
    • (1997) J Med Vet Mycol , vol.35 , pp. 389-398
    • Issakainen, J.1    Jalava, J.2    Eerola, E.3    Campbell, C.K.4
  • 26
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programmes
    • Altshul, SF and Madden, TL and Schaffer, AA and (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programmes Nucl Acids Res, 25, pp. 3389-3402.
    • (1997) Nucl Acids Res , vol.25 , pp. 3389-3402
    • Altshul, S.F.1    Madden, T.L.2    Schaffer, A.A.3
  • 27
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Higgins, D and Thompson, J and Gibson, T and (1994) CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res, 22, pp. 4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Higgins, D.1    Thompson, J.2    Gibson, T.3


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