Cladochytriales-a new order in Chytridiomycota

Mycological Research

Volumn 113, Issue 4, 2009, Pages 498-507

  Mozley Standridge, Sharon E ^a   Letcher, Peter M ^b   Longcore, Joyce E ^c   Porter, David ^a   Simmons, D Rabern ^c  

^a UNIVERSITY OF GEORGIA   (United States)

^b UNIVERSITY OF ALABAMA   (United States)

^c UNIVERSITY OF MAINE   (United States)

Author keywords

Cladochytrium; Nowakowskiella; Phylogeny; Ultrastructure; Zoospores

Indexed keywords

FUNGAL DNA; RIBOSOME DNA;

CELLULOSE; CLADISTICS; FUNGUS; MOLECULAR ANALYSIS; NEW GENUS; PHYLOGENY; RNA; SPORE; TAXONOMY; ULTRASTRUCTURE;

ARTICLE; CHYTRIDIOMYCETES; CLASSIFICATION; CYTOLOGY; FUNGUS SPORE; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR GENETICS; PHYLOGENY;

CHYTRIDIOMYCOTA; DNA, FUNGAL; DNA, RIBOSOMAL; MOLECULAR SEQUENCE DATA; PHYLOGENY; SOIL MICROBIOLOGY; SPORES, FUNGAL; WATER MICROBIOLOGY;

CHYTRIDIALES; CHYTRIDIOMYCOTA; CLADOCHYTRIACEAE; CLADOCHYTRIUM; ENDOCHYTRIACEAE; NOWAKOWSKIELLA;

EID: 63149197642     PISSN: 09537562     EISSN: 14698102     Source Type: Journal    
DOI: 10.1016/j.mycres.2008.12.004     Document Type: Article

References (44)

1. Barr D.J.S. An outline for the reclassification of the Chytridiales, and for a new order, the Spizellomycetales. Canadian Journal of Botany 58 (1980) 2380-2394
2. Barr D.J.S. Allochytridium expandens rediscovered: morphology, physiology and zoospore ultrastructure. Mycologia 78 (1986) 439-448
3. Barr D.J.S. Phylum Chytridiomycota. In: Margulis L., Corliss J.O., Melkonian M., and Chapman D.J. (Eds). Handbook of Protoctista (1990), Jones and Bartlett, Boston 454-466
4. Barr D.J.S. Phylum Chytridiomycota. In: Margulis L., Corliss J.O., Melkonian M., and Chapman D.J. (Eds). Handbook of Protoctista (2000), Jones and Bartlett, Boston 454-466
5. Barr D.J.S., and Désaulniers N.L. Allochytridium luteum n. sp.: morphology, physiology and zoospore ultrastructure. Mycologia 79 (1987) 193-199
6. Barr D.J.S., Désaulniers N.L., and Knox J.S. Catenochytridium hemicysti n. sp.: morphology, physiology and zoospore ultrastructure. Mycologia 79 (1987) 587-594
7. Berdan H.B. Two new genera of operculate chytrids. American Journal of Botany 26 (1939) 459-463
8. Clements F.E., and Shear C.L. The Genera of Fungi (1931), H.W. Wilson, New York
9. Cohn F. Ueber ein Thallophytensystem. Jahresbericht. der Schlesischen Gesellschaft für vaterländische Cultur, Breslau 57 (1879) 279-289
10. Constantineanu M.J.C. Contributions à la flore mycologique de la Roumanie. Revue Gén. Bot. 13 (1901) 369-389
11. De Wildeman E. Notes mycologiques VII. Annales de la Société belge de microscopie. Mémoires 20 (1896) 21-64
12. Hibbett D.S., Binder M., Bischoff J.F., Blackwell M., Cannon P.F., Eriksson O.E., Huhndorf S., James T., Kirk P.M., Lücking R., Thorsten Lumbsch H., Lutzoni F., Matheny P.B., McLaughlin D.J., Powell M.J., Redhead S., Schoch C.L., Spatafora J.W., Stalpers J.A., Vilgalys R., Aime M.C., Aptroot A., Bauer R., Begerow D., Benny G.L., Castlebury L.A., Crous P.W., Dai Y.C., Gams W., Geiser D.M., Griffith G.W., Gueidan C., Hawksworth D.L., Hestmark G., Hosaka K., Humber R.A., Hyde K.D., Ironside J.E., Kõljalg U., Kurtzman C.P., Larsson K.H., Lichtwardt R., Longcore J., Miadlikowska J., Miller A., Moncalvo J.M., Mozley-Standridge S., Oberwinkler F., Parmasto E., Reeb V., Rogers J.D., Roux C., Ryvarden L., Sampaio J.P., Schüssler A., Sugiyama J., Thorn R.G., Tibell L., Untereiner W.A., Walker C., Wang Z., Weir A., Weiss M., White M.M., Winka K., Yao Y.J., and N Z. A higher-level phylogenetic classification of the fungi. Mycological Research 111 (2007) 509-547
13. Hillegas A.B. Observations on a new species of Cladochytrium. Mycologia 33 (1941) 618-632
14. Huelsenbeck J.P., and Ronquist F. MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17 (2001) 754-755
15. James T.Y., Porter D., Leander C.A., Vilgalys R., and Longcore J.E. Molecular phylogenetics of the Chytridiomycota supports the utility of ultrastructural data in chytrid systematics. Canadian Journal of Botany 78 (2000) 336-350
16. James T.Y., Kauff F., Schoch C.L., Matheny P.B., Hofsetter V., Cox C.J., Celio G., Gueidan C., Fraker E., Maidlikowska J.H., Lumbsch T., Rauhut A., Reeb V., Arnold A.E., Amtoft A., Stajich J.E., Hosaka K., Sung G.-H., Johnson D., O'Rourke B., Crockett M., Binder M., Curtis J.M., Slot J.C., Wang Z., Wilson A.W., Schüssler A., Longcore J.E., O'Donnell K., Mozley-Standridge S.E., Porter D., Letcher P.M., Powell M.J., Taylor J.W., White M.M., Griffith G.W., Davies D.R., Humber R.A., Morton J.B., Sugiyama J., Rossman A.Y., Rogers J.D., Pfister D.H., Hewitt D., Hansen K., Hambleton S., Shoemaker R.A., Kohlmeyer J., Volkmann-Kohlmeyer B., Spotts R.A., Serdani M., Crous P.W., Hughes K.W., Matsuura K., Langer E., Langer G., Untereiner W.A., Lücking R., Büdel B., Geiser D.M., Aptroot A., Diederich P., Schmitt I., Schultz M., Yahr R., Hibbett D.S., Lutzoni F., McLaughlin D.J., Spatafora J.W., and Vilgalys R. Reconstructing the early evolution of fungi using a six-gene phylogeny. Nature 443 (2006) 818-822
17. James T.Y., Letcher P.M., Longcore J.E., Mozley-Standridge S.E., Porter D., Powell M.J., Griffith G.W., and Vilgalys R. A molecular phylogeny of the flagellated fungi (Chytridiomycota) and description of a new phylum (Blastocladiomycota). Mycologia 98 (2006) 860-871
18. Karling J.S. A new chytrid genus: Nephrochytrium. American Journal of Botany 25 (1938) 211-215
19. Karling J.S. Texas chytrids. Torreya 41 (1941) 105-108
20. Karling J.S. Chytridiomycetarum Iconographia (1977), Lubrecht & Cramer, Monticello, NY
21. Letcher P.M., Powell M.J., Chambers J.G., and WE H. Phylogenetic relationships among Rhizophydium isolates from North America and Australia. Mycologia 96 (2004) 1339-1351
22. Letcher P.M., Powell M.J., Chambers J.G., Longcore J.E., Churchill P.F., and Harris P.M. Ultrastructural and molecular delineation of the Chytridiaceae (Chytridiales). Canadian Journal of Botany 83 (2005) 1561-1573
23. Letcher P.M., Powell M.J., Churchill P.F., and Chambers J.G. Ultrastructural and molecular phylogenetic delineation of a new order, the Rhizophydiales. Mycological Research 110 (2006) 898-915
24. Letcher P.M., Powell M.J., Barr D.J.S., Churchill P.F., Wakefield W.S., and Picard K.T. Rhizophlyctidales-a new order in Chytridiomycota. Mycological Research 112 (2008) 1031-1048
25. Letcher P.M., Velez C.G., Barrantes M.E., Powell M.J., Churchill P.F., and Wakefield W.S. Ultrastructural and molecular analyses of Rhizophydiales (Chytridiomycota) isolates from North America and Argentina. Mycological Research 112 (2008) 759-782
26. Longcore J.E. Morphology and zoospore ultrastructure of Entophlyctis luteolus sp. nov. (Chytridiales): implications for chytrid taxonomy. Mycologia 87 (1995) 25-33
27. Longcore J.E. Rhizophydium brooksianum sp. nov., a multipored chytrid from soil. Mycologia 96 (2004) 162-171
28. Longcore J.E., Barr D.J.S., and Desaulniers N. Powellomyces, a new genus in Spizellomycetales. Canadian Journal of Botany 73 (1995) 1385-1390
29. Lucarotti C.J. Zoospore ultrastructure of Nowakowskiella elegans and Cladochytrium replicatum (Chytridiales). Canadian Journal of Botany 59 (1981) 137-148
30. Minden M.v. Chytridiineae, Ancylistineae, Monoblepharidineae, Saprolegniineae. Kryptogamenflora Mark Brandenburg 5 3 (1915) 353-496
31. Nowakowski L. Beitrag zur Kenntniss der Chytridiaceen. In: Cohn. Beitrage zur Biologie der Pflanzen 2 (1877) 73-100 Breslau.
32. Posada D., and Crandall K.A. Modeltest: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
33. Rambaut A. Se-Al; Sequence Alignment Editor (1996), University of Oxford, Oxford
34. Salkin I.F. Allochytridium expandens, gen. et sp. n.: growth and morphology in continuous culture. American Journal of Botany 57 (1970) 649-658
35. Schroeter J. Phycomycetes. In: Engler A., and Prantl K. (Eds). Die natürlichen Pflanzenfamilien vol. 1 (1892) 63-141 Part 1, 1889-1893. W. Englemann, Leipzig
36. Sikes D.S., and Lewis P.O. Beta Software, Version 1. PAUPRat: PAUP* implementation of the parsimony ratchet. Distributed by the Authors (2001), Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs
37. Simmons DR, James TY, Meyer AF, Longcore JE. Lobulomycetales, a new order in Chytridiomycota. Mycological Research 113: 450-460.
38. Sparrow F.K. Observations on operculate chytridiaceous fungi collected in the vicinity of Ithaca, NY. American Journal of Botany 20 (1933) 63-77
39. Sparrow F.K. A classification of aquatic phycomycetes. Mycologia 34 (1942) 113-116
40. Sparrow F.K. The Aquatic Phycomycetes, Exclusive of the Saprolegniaceae and Pythium (1943), University of Michigan Press, Ann Arbor
41. Sparrow F.K. Aquatic Phycomycetes. 2nd edn. (1960), University of Michigan Press, Ann Arbor
42. Swofford D.L. PAUP*: phylogenetic analysis using parsimony (*and other methods). Version 4.0b4a (2002), Sinauer Associates, Sunderland, MA
43. White T.J., Bruns T., Lee S., and JW T. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis M.A., Gelfand D.H., Sninsky J.J., and White T.J. (Eds). PCR Protocols: a guide to methods and applications (1990), Academic Press, New York 315-322
44. Zolan M.E., and Pukkila P.J. Inheritance of DNA methylation in Coprinus cinereus. Molecular and Cellular Biology 6 (1986) 195-200