Genomic structure of grass carp Mx2 and the association of its polymorphisms with susceptibility/resistance to grass carp reovirus

Molecular Immunology

Volumn 49, Issue 1-2, 2011, Pages 359-366

  Wang, Lan ^a   Su, Jianguo ^a   Peng, Limin ^a   Heng, Jianfu ^a   Chen, Lijun ^a  

^a NORTHWEST A F UNIVERSITY   (China)

Author keywords

Ctenopharyngodon idella; Genomic structure; Grass carp reovirus; Mx2; Polymorphism

Indexed keywords

MYXOVIRUS RESISTANCE PROTEIN; MYXOVIRUS RESISTANCE PROTEIN 2; UNCLASSIFIED DRUG;

ALLELE; ARTICLE; CARP; CONTROLLED STUDY; EXON; GENE LINKAGE DISEQUILIBRIUM; GENE LOCUS; GENE SEQUENCE; GENE STRUCTURE; GENOTYPE; HAPLOTYPE; INFECTION; INTRON; MORTALITY; MUTATION; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; REOVIRUS; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SINGLE NUCLEOTIDE POLYMORPHISM;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; CARPS; FISH DISEASES; FISH PROTEINS; GENETIC PREDISPOSITION TO DISEASE; GENOTYPE; GTP-BINDING PROTEINS; MOLECULAR SEQUENCE DATA; ORTHOREOVIRUS, MAMMALIAN; POLYMERASE CHAIN REACTION; POLYMORPHISM, SINGLE NUCLEOTIDE; REOVIRIDAE INFECTIONS;

CTENOPHARYNGODON; CTENOPHARYNGODON IDELLA; GRASS CARP REOVIRUS; ORTHOMYXOVIRIDAE; VERTEBRATA;

EID: 82455172016     PISSN: 01615890     EISSN: 18729142     Source Type: Journal    
DOI: 10.1016/j.molimm.2011.09.010     Document Type: Article

References (46)

1. Chen Y.M., Su Y.L., Lin J.H.Y., Yang H.L., Chen T.Y. Cloning of an orange-spotted grouper (Epinephelus coioides) Mx cDNA and characterisation of its expression in response to nodavirus. Fish Shellfish Immunol. 2006, 20:58-71.
2. Dillon D., Runstadler J. Mx gene diversity and influenza association among five wild dabbling duck species (Anas spp.) in Alaska. Infect. Genet. Evol. 2010, 10:1085-1093.
3. Fernandez-Trujillo M., Novel P., Manchado M., Sepulcre M., Mulero V., Borrego J., Alvarez M., Bejar J. Three Mx genes with differential response to VNNV infection have been identified in Gilthead seabream (Sparus aurata). Mol. Immunol. 2011, 48:1216-1223.
4. Gobbi M., Viprakasit V., Hughes J.R., Fisher C., Buckle V.J., Ayyub H., Gibbons R.J., Vernimmen D., Yoshinaga Y., De Jong P., Cheng J.F., Rubin E.M., Wood W.G., Bowden D., Higgs D.R. A regulatory SNP causes a human genetic disease by creating a new transcriptional promoter. Science 2006, 312:1215-1217.
5. Haller O., Staeheli P., Kochs G. Interferon-induced Mx proteins in antiviral host defense. Biochimie 2007, 89:812-818.
6. Haller O., Staeheli P., Kochs G. Protective role of interferon-induced Mx GTPases against influenza viruses. Rev. Sci. Technol. 2009, 28:219-231.
7. Hamano E., Hijikata M., Itoyama S., Quy T., Phi N.C., Long H.T., Ha L.D., Ban V.V., Matsushita I., Yanai H. Polymorphisms of interferon-inducible genes OAS-1 and MxA associated with SARS in the Vietnamese population. Biochem. Biophys. Res. Commun. 2005, 329:1234-1239.
8. Heng J., Su J., Huang T., Dong J., Chen L. The polymorphism and haplotype of TLR3 gene in grass carp (Ctenopharyngodon idella) and their associations with susceptibility/resistance to grass carp reovirus. Fish Shellfish Immunol. 2011, 30:45-50.
9. Hijikata M., Ohta Y., Mishiro S. Identification of a single nucleotide polymorphism in the MxA gene promoter (G/T at nt -88) correlated with the response of hepatitis C patients to interferon. Intervirology 2000, 43:124-127.
10. Hiratani H., Bowden D.W., Ikegami S., Shirasawa S., Shimizu A., Iwatani Y., Akamizu T. Multiple SNPs in intron 7 of thyrotropin receptor are associated with Graves' disease. J. Clin. Endocrinol. Metab. 2005, 90:2898-2903.
11. Hoffmeyer S., Burk O., Von Richter O., Arnold H., Brockmoller J., Johne A., Cascorbi I., Gerloff T., Roots I., Eichelbaum M. Functional polymorphisms of the human multidrug-resistance gene: multiple sequence variations and correlation of one allele with P-glycoprotein expression and activity in vivo. Proc. Natl. Acad. Sci. U.S.A. 2000, 97:3473-3478.
12. Hug H., Costas M., Staeheli P., Aebi M., Weissmann C. Organization of the murine Mx gene and characterization of its interferon-and virus-inducible promoter. Mol. Cell. Biol. 1988, 8:3065-3079.
13. Jackson A.N., Mclure C.A., Dawkins R.L., Keating P.J. Mannose binding lectin (MBL) copy number polymorphism in Zebrafish (D. rerio) and identification of haplotypes resistant to L. anguillarum. Immunogenetics 2007, 59:861-872.
14. Jiang J., Zhang Y.B., Li S., Yu F.F., Sun F., Gui J.F. Expression regulation and functional characterization of a novel interferon inducible gene Gig2 and its promoter. Mol. Immunol. 2009, 46:3131-3140.
15. Knapp S., Yee L., Frodsham A., Hennig B., Hellier S., Zhang L., Wright M., Chiaramonte M., Graves M., Thomas H. Polymorphisms in interferon-induced genes and the outcome of hepatitis C virus infection: roles of MxA, OAS-1 and PKR. Genes Immun. 2003, 4:411-419.
16. Ko J.H., Jin H.K., Asano A., Takada A., Ninomiya A., Kida H., Hokiyama H., Ohara M., Tsuzuki M., Nishibori M. Polymorphisms and the differential antiviral activity of the chicken Mx gene. Genome Res. 2002, 12:595-601.
17. Kochs G., Reichelt M., Danino D., Hinshaw J.E., Haller O. Assay and functional analysis of dynamin-like Mx proteins. Method Enzymol. 2005, 404:632-643.
18. Lee S.H., Vidal S.M. Functional diversity of Mx proteins: variations on a theme of host resistance to infection. Genome Res. 2002, 12:527-530.
19. Lee J.Y., Hirono I., Aoki T. Cloning and analysis of expression of Mx cDNA in Japanese flounder; Paralichthys olivaceus. Dev. Comp. Immunol. 2000, 24:407-415.
20. Li L., Zhao J., Wang L., Qiu L., Zhang H., Dong C., Cong M., Song L. The polymorphism of lysozyme gene in Zhikong scallop (Chlamys farreri) and its association with susceptibility/resistance to Listonella anguillarum. Fish Shellfish Immunol. 2009, 27:136-142.
21. Li Z., Zhang Z., He Z., Tang W., Li T., Zeng Z., He L., Shi Y. A partition-ligation-combination-subdivision EM algorithm for haplotype inference with multiallelic markers: update of the SHEsis. Cell Res. 2009, 19:519-523. http://analysis.bio-x.cn/.
22. Lin H., Zhu W., Silva J.C., Gu X., Buell C.R. Intron gain and loss in segmentally duplicated genes in rice. Genome Biol. 2006, 7:R41.
23. Lindenmann J. Resistance of mice to mouse-adapted influenza A virus. Virology 1962, 16:203-204.
24. Morozumi T., Sumantri C., Nakajima E., Kobayashi E., Asano A., Oishi T., Mitsuhashi T., Watanabe T., Hamasima N. Three types of polymorphisms in exon 14 in porcine Mx1 gene. Biochem. Genet. 2001, 39:251-260.
25. Nakatsu Y., Yamada K., Ueda J., Onogi A., Ables G.P., Nishibori M., Hata H., Takada A., Sawai K., Tanabe Y., Morita M., Daikohara M., Watanabe T. Genetic polymorphisms and antiviral activity in the bovine MX1 gene. Anim. Genet. 2004, 35:182-187.
26. Plant K.P., Thune R.L. Cloning and characterisation of a channel catfish (Ictalurus punctatus) Mx gene. Fish Shellfish Immunol. 2004, 16:391-405.
27. Plant K.P., Thune R.L. Genomic organisation of the channel catfish Mx1 gene and characterisation of multiple channel catfish Mx gene promoters. Fish Shellfish Immunol. 2008, 24:575-583.
28. Reumers J., Conde L., Medina I., Maurer-Stroh S., Van Durme J., Dopazo J., Rousseau F., Schymkowitz J. Joint annotation of coding and non-coding single nucleotide polymorphisms and mutations in the SNP effect and Pupa Suite databases. Nucleic Acids Res. 2008, 36:D825-D829.
29. Robertsen B., Trobridge G., Leongt J.A. Molecular cloning of double-stranded RNA inducible Mx genes from Atlantic salmon (Salmo salar L.). Dev. Comp. Immunol. 1997, 21:397-412.
30. Samuel C.E. Antiviral actions of interferons. Clin. Microbiol. Rev. 2001, 14:778-809.
31. Shinkai H., Suzuki R., Akiba M., Okumura N., Uenishi H. Porcine Toll-like receptors: recognition of Salmonella enterica serovar Choleraesuis and influence of polymorphisms. Mol. Immunol. 2011, 48:1114-1120.
32. Sironi L., Ramelli P., Williams J.L., Mariani P. PCR-RFLP genotyping protocol for chicken Mx gene G/A polymorphism associated with the S631N mutation. Genet. Mol. Res. 2010, 9:1104-1108.
33. Staeheli P., Yu Y., Grob R., Haller O. A double-stranded RNA-inducible fish gene homologous to the murine influenza virus resistance gene Mx. Mol. Cell. Biol. 1989, 9:3117-3121.
34. Su J., Jang S., Yang C., Wang Y., Zhu Z. Genomic organization and expression analysis of Toll-like receptor 3 in grass carp (Ctenopharyngodon idella). Fish Shellfish Immunol. 2009, 27:433-439.
35. Su J., Yang C., Zhu Z., Wang Y., Jang S., Liao L. Enhanced resistance to grass carp reovirus infection in Mx-transgenic rare minnow (Gobiocypris rarus). Fish Shellfish Immunol. 2009, 26:828-835.
36. Su J., Zhu Z., Wang Y., Zou J., Wang N., Jang S. Grass carp reovirus activates RNAi pathway in rare minnow, Gobiocypris rarus. Aquaculture 2009, 289:1-5.
37. Su J., Huang T., Dong J., Heng J., Zhang R., Peng L. Molecular cloning and immune responsive expression of MDA5 gene, a pivotal member of the RLR gene family from grass carp Ctenopharyngodon idella. Fish Shellfish Immunol. 2010, 28:712-718.
38. Sulandari S., Zein M.S.A., Astuti D., Sartika T. Genetic polymorphisms of the chicken antiviral Mx gene in a variety of Indonesian indigenous chicken breeds. Jurnal Veteriner Juni 2009, 10:50-56.
39. Swiderek W., Bhide M., Gruszczy Ska J., Soltis K., Witkowska D., Mikula I. Toll-like receptor gene polymorphism and its relationship with somatic cell concentration and natural bacterial infections of the mammary gland in sheep. Folia Microbiol. 2006, 51:647-652.
40. Tazi-Ahnini R., Di Giovine F.S., Mcdonagh A.J.G., Messenger A.G., Amadou C., Cox A., Duff G.W., Cork M.J. Structure and polymorphism of the human gene for the interferon-induced p78 protein (MX1): evidence of association with alopecia areata in the Down syndrome region. Hum. Genet. 2000, 106:639-645.
41. Trobridge G.D., Leong J.O.a.N.N.C. Characterization of a rainbow trout Mx gene. J. Interferon Cytokine Res. 1995, 15:691-702.
42. Trobridge G., Lapatra S., Kim C., Leong J. Mx mRNA expression and RFLP analysis of rainbow trout Oncorhynchus mykiss genetic crosses selected for susceptibility or resistance to IHNV. Dis. Aquat. Organ. 2000, 40:1-7.
43. Wu Y., Chi S. Cloning and analysis of antiviral activity of a barramundi (Lates calcarifer) Mx gene. Fish Shellfish Immunol. 2007, 23:97-108.
44. Yap W.H., Tay A., Brenner S., Venkatesh B. Molecular cloning of the pufferfish (Takifugu rubripes) Mx gene and functional characterization of its promoter. Immunogenetics 2003, 54:705-713.
45. Yong Y., Lin H. SHEsis, a powerful software platform for analyses of linkage disequilibrium, haplotype construction, and genetic association at polymorphism loci. Cell Res. 2005, 15:97-98.
46. Zhang Y.B., Li Q., Gui J.F. Differential expression of two Carassius auratus Mx genes in cultured CAB cells induced by grass carp hemorrhage virus and interferon. Immunogenetics 2004, 56:68-75.