Predicting functional transcription factor binding through alignment-free and affinity-based analysis of orthologous promoter sequences

Bioinformatics

Volumn 24, Issue 13, 2008, Pages

  Ward, Lucas D ^a   Bussemaker, Harmen J ^a  

^a Och Spine at New York Presbyterian Hospitals   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA BINDING PROTEIN; FUNGAL DNA; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR SNT2; TRANSCRIPTION FACTOR STB4;

ARTICLE; BINDING AFFINITY; BINDING SITE; BIOLOGICAL ACTIVITY; CONTROLLED STUDY; DNA DETERMINATION; FUNCTIONAL GENOMICS; GENE EXPRESSION; GENE FUNCTION; GENE INTERACTION; GENETIC CONSERVATION; GENOME ANALYSIS; NONHUMAN; ORTHOLOGY; PRIORITY JOURNAL; PROMOTER REGION; QUANTITATIVE ANALYSIS; SACCHAROMYCES CEREVISIAE; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SPECIES COMPARISON; YEAST;

SACCHAROMYCES CEREVISIAE;

ALIGNMENT; FORECASTING; INTELLIGENT SYSTEMS; MICROARRAYS; MOLECULAR BIOLOGY; TRANSCRIPTION; TRANSCRIPTION FACTORS; YEAST;

BIOLOGICAL FUNCTIONS; CHROMATIN IMMUNOPRECIPITATION; COMPARATIVE GENOMICS; EVOLUTIONARY CONSERVATIONS; EXPRESSION MICROARRAY; FUNCTIONAL ANNOTATION; GENE EXPRESSION DATA; TRANSCRIPTION FACTOR BINDING;

BINDING SITES;

EID: 46249089455     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btn154     Document Type: Article

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