-
1
-
-
73949118739
-
Molecular mechanisms of Escherichia coli pathogenicity
-
Croxen MA, Finlay BB, (2010) Molecular mechanisms of Escherichia coli pathogenicity. Nat Rev Microbiol 8: 26-38.
-
(2010)
Nat Rev Microbiol
, vol.8
, pp. 26-38
-
-
Croxen, M.A.1
Finlay, B.B.2
-
2
-
-
34548502503
-
Enteropathogenic and enterohemorrhagic Escherichia coli virulence gene regulation
-
Mellies JL, Barron AM, Carmona AM, (2007) Enteropathogenic and enterohemorrhagic Escherichia coli virulence gene regulation. Infect Immun 75: 4199-4210.
-
(2007)
Infect Immun
, vol.75
, pp. 4199-4210
-
-
Mellies, J.L.1
Barron, A.M.2
Carmona, A.M.3
-
3
-
-
0033794502
-
The locus of enterocyte effacement (LEE)-encoded regulator controls expression of both LEE- and non-LEE-encoded virulence factors in enteropathogenic and enterohemorrhagic Escherichia coli
-
Elliott SJ, Sperandio V, Girón JA, Shin S, Mellies JL, et al. (2000) The locus of enterocyte effacement (LEE)-encoded regulator controls expression of both LEE- and non-LEE-encoded virulence factors in enteropathogenic and enterohemorrhagic Escherichia coli. Infect Immun 68: 6115-6126.
-
(2000)
Infect Immun
, vol.68
, pp. 6115-6126
-
-
Elliott, S.J.1
Sperandio, V.2
Girón, J.A.3
Shin, S.4
Mellies, J.L.5
-
4
-
-
0033458708
-
Hierarchy in the expression of the locus of enterocyte effacement genes of enteropathogenic Escherichia coli
-
Friedberg D, Umanski T, Fang Y, Rosenshine I, (1999) Hierarchy in the expression of the locus of enterocyte effacement genes of enteropathogenic Escherichia coli. Mol Microbiol 34: 941-952.
-
(1999)
Mol Microbiol
, vol.34
, pp. 941-952
-
-
Friedberg, D.1
Umanski, T.2
Fang, Y.3
Rosenshine, I.4
-
5
-
-
33646130598
-
Towards a vaccine for attaching/effacing Escherichia coli: a LEE encoded regulator (ler) mutant of rabbit enteropathogenic Escherichia coli is attenuated, immunogenic, and protects rabbits from lethal challenge with the wild-type virulent strain
-
Zhu C, Feng S, Thate TE, Kaper JB, Boedeker EC, (2006) Towards a vaccine for attaching/effacing Escherichia coli: a LEE encoded regulator (ler) mutant of rabbit enteropathogenic Escherichia coli is attenuated, immunogenic, and protects rabbits from lethal challenge with the wild-type virulent strain. Vaccine 24: 3845-3855.
-
(2006)
Vaccine
, vol.24
, pp. 3845-3855
-
-
Zhu, C.1
Feng, S.2
Thate, T.E.3
Kaper, J.B.4
Boedeker, E.C.5
-
6
-
-
34547745944
-
Ler and H-NS, regulators controlling expression of the long polar fimbriae of Escherichia coli O157:H7
-
Torres AG, López-Sánchez GN, Milflores-Flores L, Patel SD, Rojas-López M, et al. (2007) Ler and H-NS, regulators controlling expression of the long polar fimbriae of Escherichia coli O157:H7. J Bacteriol 189: 5916-5928.
-
(2007)
J Bacteriol
, vol.189
, pp. 5916-5928
-
-
Torres, A.G.1
López-Sánchez, G.N.2
Milflores-Flores, L.3
Patel, S.D.4
Rojas-López, M.5
-
7
-
-
47249155189
-
Global regulation by horizontally transferred regulators establishes the pathogenicity of Escherichia coli
-
Abe H, Miyahara A, Oshima T, Tashiro K, Ogura Y, et al. (2008) Global regulation by horizontally transferred regulators establishes the pathogenicity of Escherichia coli. DNA Res 15: 25-38.
-
(2008)
DNA Res
, vol.15
, pp. 25-38
-
-
Abe, H.1
Miyahara, A.2
Oshima, T.3
Tashiro, K.4
Ogura, Y.5
-
8
-
-
0037218281
-
Interaction of Ler at the LEE5 (tir) operon of enteropathogenic Escherichia coli
-
Haack KR, Robinson CL, Miller KJ, Fowlkes JW, Mellies JL, (2003) Interaction of Ler at the LEE5 (tir) operon of enteropathogenic Escherichia coli. Infect Immun 71: 384-392.
-
(2003)
Infect Immun
, vol.71
, pp. 384-392
-
-
Haack, K.R.1
Robinson, C.L.2
Miller, K.J.3
Fowlkes, J.W.4
Mellies, J.L.5
-
9
-
-
67651227404
-
Differential regulation of horizontally acquired and core genome genes by the bacterial modulator H-NS
-
doi:10.1371/journal.pgen.1000513
-
Baños RC, Vivero A, Aznar S, García J, Pons M, et al. (2009) Differential regulation of horizontally acquired and core genome genes by the bacterial modulator H-NS. PLoS Genet 5: e1000513 doi:10.1371/journal.pgen.1000513.
-
(2009)
PLoS Genet
, vol.5
-
-
Baños, R.C.1
Vivero, A.2
Aznar, S.3
García, J.4
Pons, M.5
-
10
-
-
0033636187
-
Activation of enteropathogenic Escherichia coli (EPEC) LEE2 and LEE3 operons by Ler
-
Sperandio V, Mellies JL, Delahay RM, Frankel G, Crawford JA, et al. (2000) Activation of enteropathogenic Escherichia coli (EPEC) LEE2 and LEE3 operons by Ler. Mol Microbiol 38: 781-793.
-
(2000)
Mol Microbiol
, vol.38
, pp. 781-793
-
-
Sperandio, V.1
Mellies, J.L.2
Delahay, R.M.3
Frankel, G.4
Crawford, J.A.5
-
11
-
-
28044448059
-
A positive loop controls expression of the locus of enterocyte effacement-encoded regulatos Ler and GrlA
-
Barba J, Bustamante VH, Flores-Valdez MA, Deng W, Finlay BB, et al. (2005) A positive loop controls expression of the locus of enterocyte effacement-encoded regulatos Ler and GrlA. J Bacteriol 187: 7918-7930.
-
(2005)
J Bacteriol
, vol.187
, pp. 7918-7930
-
-
Barba, J.1
Bustamante, V.H.2
Flores-Valdez, M.A.3
Deng, W.4
Finlay, B.B.5
-
12
-
-
77954397102
-
Transcriptional analysis of the grlRA virulence operon from Citrobacter rodentium
-
Tauschek M, Yang J, Hocking D, Azzopardi K, Tan A, et al. (2010) Transcriptional analysis of the grlRA virulence operon from Citrobacter rodentium. J Bacteriol 192: 3722-3734.
-
(2010)
J Bacteriol
, vol.192
, pp. 3722-3734
-
-
Tauschek, M.1
Yang, J.2
Hocking, D.3
Azzopardi, K.4
Tan, A.5
-
13
-
-
79551499796
-
Regulation of nleA in shiga toxin-producing Escherichia coli O84:H4 strain 4795/97
-
Schwidder M, Hensel M, Schmidt H, (2011) Regulation of nleA in shiga toxin-producing Escherichia coli O84:H4 strain 4795/97. J Bacteriol 193: 832-841.
-
(2011)
J Bacteriol
, vol.193
, pp. 832-841
-
-
Schwidder, M.1
Hensel, M.2
Schmidt, H.3
-
14
-
-
79952779538
-
Regulatory control of the Escherichia coli O157:H7 lpf1 operon by H-NS and Ler
-
Rojas-López M, Arenas-Hernández MMP, Medrano-López A, Martínez de la Peña CF, Puente JL, et al. (2011) Regulatory control of the Escherichia coli O157:H7 lpf1 operon by H-NS and Ler. J Bacteriol 193: 1622-1632.
-
(2011)
J Bacteriol
, vol.193
, pp. 1622-1632
-
-
Rojas-López, M.1
Arenas-Hernández, M.M.P.2
Medrano-López, A.3
Martínez de la Peña, C.F.4
Puente, J.L.5
-
15
-
-
35549009343
-
High-affinity DNA binding sites for H-NS provide a molecular basis for selective silencing within proteobacterial genomes
-
Lang B, Blot N, Bouffartigues E, Buckle M, Geertz M, et al. (2007) High-affinity DNA binding sites for H-NS provide a molecular basis for selective silencing within proteobacterial genomes. Nucleic Acids Res 35: 6330-6337.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 6330-6337
-
-
Lang, B.1
Blot, N.2
Bouffartigues, E.3
Buckle, M.4
Geertz, M.5
-
16
-
-
57349101773
-
Mutational analysis of the locus of enterocyte effacement-encoded regulator (Ler) of enteropathogenic Escherichia coli
-
Yerushalmi G, Nadler C, Berdichevski T, Rosenshine I, (2008) Mutational analysis of the locus of enterocyte effacement-encoded regulator (Ler) of enteropathogenic Escherichia coli. J Bacteriol 190: 7808-7818.
-
(2008)
J Bacteriol
, vol.190
, pp. 7808-7818
-
-
Yerushalmi, G.1
Nadler, C.2
Berdichevski, T.3
Rosenshine, I.4
-
17
-
-
0035083932
-
H-NS and H-NS-like proteins in Gram-negative bacteria and their multiple role in the regulation of bacterial metabolism
-
Bertin P, Hommais F, Krin E, Soutourina O, Tendeng C, et al. (2001) H-NS and H-NS-like proteins in Gram-negative bacteria and their multiple role in the regulation of bacterial metabolism. Biochimie 83: 235-241.
-
(2001)
Biochimie
, vol.83
, pp. 235-241
-
-
Bertin, P.1
Hommais, F.2
Krin, E.3
Soutourina, O.4
Tendeng, C.5
-
18
-
-
58949087897
-
Ler interdomain linker is essential for anti-silencing activity in enteropathogenic Escherichia coli
-
Mellies JL, Larabee FJ, Zarr MA, Horback KJ, Lorenzen E, et al. (2008) Ler interdomain linker is essential for anti-silencing activity in enteropathogenic Escherichia coli. Microbiology 154: 3624-3638.
-
(2008)
Microbiology
, vol.154
, pp. 3624-3638
-
-
Mellies, J.L.1
Larabee, F.J.2
Zarr, M.A.3
Horback, K.J.4
Lorenzen, E.5
-
19
-
-
0028900971
-
Solution structure of the DNA binding domain of a nucleoid-associated protein, H-NS, from Escherichia coli
-
Shindo H, Iwaki T, Ieda R, Kurumizaka H, Ueguchi C, et al. (1995) Solution structure of the DNA binding domain of a nucleoid-associated protein, H-NS, from Escherichia coli. FEBS Lett 360: 125-131.
-
(1995)
FEBS Lett
, vol.360
, pp. 125-131
-
-
Shindo, H.1
Iwaki, T.2
Ieda, R.3
Kurumizaka, H.4
Ueguchi, C.5
-
20
-
-
67649710352
-
The unique structure of A-tracts and intrinsic DNA bending
-
Haran TE, Mohanty U, (2009) The unique structure of A-tracts and intrinsic DNA bending. Q Rev Biophys 42: 41-81.
-
(2009)
Q Rev Biophys
, vol.42
, pp. 41-81
-
-
Haran, T.E.1
Mohanty, U.2
-
21
-
-
0033027096
-
Identification of the DNA binding surface of H-NS protein from Escherichia coli by heteronuclear NMR spectroscopy
-
Shindo H, Ohnuki A, Ginba H, Katoh E, Ueguchi C, et al. (1999) Identification of the DNA binding surface of H-NS protein from Escherichia coli by heteronuclear NMR spectroscopy. FEBS Lett 455: 63-69.
-
(1999)
FEBS Lett
, vol.455
, pp. 63-69
-
-
Shindo, H.1
Ohnuki, A.2
Ginba, H.3
Katoh, E.4
Ueguchi, C.5
-
22
-
-
70450148398
-
Sequence-specific recognition of DNA by the C-terminal domain of nucleoid-associated protein H-NS
-
Sette M, Spurio R, Trotta E, Brandizi C, Brandi A, et al. (2009) Sequence-specific recognition of DNA by the C-terminal domain of nucleoid-associated protein H-NS. J Biol Chem 284: 30453-30462.
-
(2009)
J Biol Chem
, vol.284
, pp. 30453-30462
-
-
Sette, M.1
Spurio, R.2
Trotta, E.3
Brandizi, C.4
Brandi, A.5
-
23
-
-
70350686719
-
The role of DNA shape in protein-DNA recognition
-
Rohs R, West SM, Sosinsky A, Liu P, Mann RS, et al. (2009) The role of DNA shape in protein-DNA recognition. Nature 461: 1248-1253.
-
(2009)
Nature
, vol.461
, pp. 1248-1253
-
-
Rohs, R.1
West, S.M.2
Sosinsky, A.3
Liu, P.4
Mann, R.S.5
-
24
-
-
77953311493
-
Electrostatic interactions between arginines and the minor groove in the nucleosome
-
West SM, Rohs R, Man RS, Honig B, (2010) Electrostatic interactions between arginines and the minor groove in the nucleosome. J Biomol Struct Dyn 27: 861-866.
-
(2010)
J Biomol Struct Dyn
, vol.27
, pp. 861-866
-
-
West, S.M.1
Rohs, R.2
Man, R.S.3
Honig, B.4
-
25
-
-
77950419841
-
Lsr2 is a nucleoid-associated protein that targets AT-rich sequences and virulence genes in Mycobacterium tuberculosis
-
Gordon BRG, Li Y, Wang L, Sintsova A, van Bakel H, et al. (2010) Lsr2 is a nucleoid-associated protein that targets AT-rich sequences and virulence genes in Mycobacterium tuberculosis. Proc Natl Acad Sci USA 107: 5154-5159.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 5154-5159
-
-
Gordon, B.R.G.1
Li, Y.2
Wang, L.3
Sintsova, A.4
van Bakel, H.5
-
26
-
-
3042581815
-
The structural basis of DNA flexibility
-
Travers AA, (2004) The structural basis of DNA flexibility. Phil Transat A Math Phys Eng Sci 362: 1423-1438.
-
(2004)
Phil Transat A Math Phys Eng Sci
, vol.362
, pp. 1423-1438
-
-
Travers, A.A.1
-
27
-
-
0035725521
-
A molecular mechanism for the repression of transcription by the H-NS protein
-
Rimsky S, Zuber F, Buckle M, Buc H, (2001) A molecular mechanism for the repression of transcription by the H-NS protein. Mol Microbiol 42: 1311-1323.
-
(2001)
Mol Microbiol
, vol.42
, pp. 1311-1323
-
-
Rimsky, S.1
Zuber, F.2
Buckle, M.3
Buc, H.4
-
28
-
-
34247628510
-
H-NS cooperative binding to high-affinity sites in a regulatory element results in transcriptional silencing
-
Bouffartigues E, Buckle M, Badaut C, Travers A, Rimsky S, (2007) H-NS cooperative binding to high-affinity sites in a regulatory element results in transcriptional silencing. Nat Struct Mol Biol 14: 441-448.
-
(2007)
Nat Struct Mol Biol
, vol.14
, pp. 441-448
-
-
Bouffartigues, E.1
Buckle, M.2
Badaut, C.3
Travers, A.4
Rimsky, S.5
-
29
-
-
79953676877
-
Direct and indirect effects of H-NS and FIS on global gene expression control in Escherichia coli
-
Kahramanoglou C, Seshasayee AS, Prieto AI, Ibberson D, Schmidt S, et al. (2011) Direct and indirect effects of H-NS and FIS on global gene expression control in Escherichia coli. Nucleic Acids Res 39: 2073-2091.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 2073-2091
-
-
Kahramanoglou, C.1
Seshasayee, A.S.2
Prieto, A.I.3
Ibberson, D.4
Schmidt, S.5
-
30
-
-
0036174055
-
Evidence for direct protein-protein interaction between members of the enterobacterial Hha/YmoA and H-NS family of proteins
-
Nieto JM, Madrid C, Miquelay E, Parra JL, Rodríguez S, et al. (2002) Evidence for direct protein-protein interaction between members of the enterobacterial Hha/YmoA and H-NS family of proteins. J Bacteriol 184: 629-635.
-
(2002)
J Bacteriol
, vol.184
, pp. 629-635
-
-
Nieto, J.M.1
Madrid, C.2
Miquelay, E.3
Parra, J.L.4
Rodríguez, S.5
-
31
-
-
0024435833
-
Stereo-specific nuclear magnetic resonance assignments of the methyl groups of valine and leucine in the DNA-binding domain of the 434 Repressor by biosynthetically directed fractional 13C labeling
-
Neri D, Szyperski T, Otting O, Senn H, Wuthrich K, (1989) Stereo-specific nuclear magnetic resonance assignments of the methyl groups of valine and leucine in the DNA-binding domain of the 434 Repressor by biosynthetically directed fractional 13C labeling. Biochemistry 28: 7510-7516.
-
(1989)
Biochemistry
, vol.28
, pp. 7510-7516
-
-
Neri, D.1
Szyperski, T.2
Otting, O.3
Senn, H.4
Wuthrich, K.5
-
32
-
-
0026889426
-
Support of 1H NMR assignments in proteins by biosynthetically directed fractional 13C-labeling
-
Szyperski T, Neri D, Leiting B, Otting G, Wüthrich K, (1992) Support of 1H NMR assignments in proteins by biosynthetically directed fractional 13C-labeling. J Biomol NMR 2: 323-334.
-
(1992)
J Biomol NMR
, vol.2
, pp. 323-334
-
-
Szyperski, T.1
Neri, D.2
Leiting, B.3
Otting, G.4
Wüthrich, K.5
-
33
-
-
49649090128
-
A single residue loop mutation enhancing Hha binding to nucleoid associated protein H-NS results in loss of Hha regulatory properties
-
Cordeiro TN, García J, Pons JI, Aznar S, Juárez A, et al. (2008) A single residue loop mutation enhancing Hha binding to nucleoid associated protein H-NS results in loss of Hha regulatory properties. FEBS Lett 20: 3139-3144.
-
(2008)
FEBS Lett
, vol.20
, pp. 3139-3144
-
-
Cordeiro, T.N.1
García, J.2
Pons, J.I.3
Aznar, S.4
Juárez, A.5
-
34
-
-
11144265736
-
A general Framework and data analysis of competitive high-throughput screens for small-molecule inhibitors of protein-protein interactions by fluorescence Polarization
-
Roehrl M, Wang J, Wagner G, (2004) A general Framework and data analysis of competitive high-throughput screens for small-molecule inhibitors of protein-protein interactions by fluorescence Polarization. Biochemistry 43: 16056-16066.
-
(2004)
Biochemistry
, vol.43
, pp. 16056-16066
-
-
Roehrl, M.1
Wang, J.2
Wagner, G.3
-
35
-
-
0029400480
-
NMRPipe: A multidimensional spectral processing system based on UNIX pipes
-
Delaglio F, Grzesiek S, Vuister GW, Zhu G, Pfeifer J, et al. (1995) NMRPipe: A multidimensional spectral processing system based on UNIX pipes. J Biomol NMR 6: 277-293.
-
(1995)
J Biomol NMR
, vol.6
, pp. 277-293
-
-
Delaglio, F.1
Grzesiek, S.2
Vuister, G.W.3
Zhu, G.4
Pfeifer, J.5
-
36
-
-
4644259437
-
Using NMRView to visualize and analyze the NMR spectra of macromolecules
-
Johnson BA, (2004) Using NMRView to visualize and analyze the NMR spectra of macromolecules. Methods Mol Biol 278: 313-352.
-
(2004)
Methods Mol Biol
, vol.278
, pp. 313-352
-
-
Johnson, B.A.1
-
37
-
-
18044386484
-
The Computer Aided Resonance Assignment Tutorial
-
Goldau (Switzerland), CANTINA
-
Keller RLJ, (2004) The Computer Aided Resonance Assignment Tutorial. Goldau (Switzerland) CANTINA.
-
(2004)
-
-
Keller, R.L.J.1
-
38
-
-
0035072685
-
Improved NMR spectra of a protein-DNA complex through rational mutagenesis and the application of a sensitivity optimized istope-filtered NOESY experiment
-
Iwahara J, Wojciak JM, Clubb RT, (2001) Improved NMR spectra of a protein-DNA complex through rational mutagenesis and the application of a sensitivity optimized istope-filtered NOESY experiment. J Biomol NMR 19: 231-241.
-
(2001)
J Biomol NMR
, vol.19
, pp. 231-241
-
-
Iwahara, J.1
Wojciak, J.M.2
Clubb, R.T.3
-
39
-
-
0000165109
-
Isotope-filtered 2D NMR of a protein-peptide complex: study of a skeletal muscle myosin light chain kinase fragment bound to calmodulin
-
Ikura M, Bax A, (1992) Isotope-filtered 2D NMR of a protein-peptide complex: study of a skeletal muscle myosin light chain kinase fragment bound to calmodulin. J Am Chem Soc 114: 2433-2440.
-
(1992)
J Am Chem Soc
, vol.114
, pp. 2433-2440
-
-
Ikura, M.1
Bax, A.2
-
40
-
-
0036873589
-
Protein NMR structure determination with automated NOE-identification in the NOESY spectra using the new software ATNOS
-
Herrmann T, Güntert P, Wüthrich K, (2002) Protein NMR structure determination with automated NOE-identification in the NOESY spectra using the new software ATNOS. J Biomol NMR 24: 171-189.
-
(2002)
J Biomol NMR
, vol.24
, pp. 171-189
-
-
Herrmann, T.1
Güntert, P.2
Wüthrich, K.3
-
41
-
-
0036308102
-
Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA
-
Herrmann T, Güntert P, Wüthrich K, (2002) Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA. J Mol Biol 319: 209-227.
-
(2002)
J Mol Biol
, vol.319
, pp. 209-227
-
-
Herrmann, T.1
Güntert, P.2
Wüthrich, K.3
-
42
-
-
0030808350
-
Methods for measurement of intermolecular NOEs by Multinuclear NMR spectroscopy: application to a bacteriophage λ N-peptide/boxB RNA complex
-
Zwahlen C, Legault P, Vincent SJF, Greenblatt J, Konrat R, et al. (1997) Methods for measurement of intermolecular NOEs by Multinuclear NMR spectroscopy: application to a bacteriophage λ N-peptide/boxB RNA complex. J Am Chem Soc 119: 6711-6721.
-
(1997)
J Am Chem Soc
, vol.119
, pp. 6711-6721
-
-
Zwahlen, C.1
Legault, P.2
Vincent, S.J.F.3
Greenblatt, J.4
Konrat, R.5
-
43
-
-
0033003335
-
Protein backbone angle restraints from searching a database for chemical shift and sequence homology
-
Cornilescu G, Delaglio F, Bax A, (1999) Protein backbone angle restraints from searching a database for chemical shift and sequence homology. J Biomol NMR 13: 289-302.
-
(1999)
J Biomol NMR
, vol.13
, pp. 289-302
-
-
Cornilescu, G.1
Delaglio, F.2
Bax, A.3
-
44
-
-
12044259775
-
Quantitative J correlation: a new approach for measuring homonuclear three-bond J(HN-Hα) coupling constants in 15N-enriched proteins
-
Vuister GW, Bax A, (1993) Quantitative J correlation: a new approach for measuring homonuclear three-bond J(HN-Hα) coupling constants in 15N-enriched proteins. J Am Chem Soc 115: 7772-7777.
-
(1993)
J Am Chem Soc
, vol.115
, pp. 7772-7777
-
-
Vuister, G.W.1
Bax, A.2
-
45
-
-
4644340524
-
Automated NMR structured calculation using CYANA
-
Güntert P, (2004) Automated NMR structured calculation using CYANA. Methods Mol Biol 278: 353-378.
-
(2004)
Methods Mol Biol
, vol.278
, pp. 353-378
-
-
Güntert, P.1
-
46
-
-
3543012707
-
Crystallography & NMR System (CNS). A new software suite for macromolecular structure determination
-
Brunger AT, Adams PD, Clore GM, DeLano WL, Gros P, et al. (1998) Crystallography & NMR System (CNS). A new software suite for macromolecular structure determination. Acta Crystallogr D 54: 905-921.
-
(1998)
Acta Crystallogr D
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
-
47
-
-
21044449889
-
RECOORD: a REcalculated COORdinates Database of 500+ proteins from the PDB using restraints from the BioMagResBank
-
Nederveen AJ, Doreleijers JF, Vranken W, Miller Z, Spronk CA, et al. (2005) RECOORD: a REcalculated COORdinates Database of 500+ proteins from the PDB using restraints from the BioMagResBank. Proteins 59: 662-672.
-
(2005)
Proteins
, vol.59
, pp. 662-672
-
-
Nederveen, A.J.1
Doreleijers, J.F.2
Vranken, W.3
Miller, Z.4
Spronk, C.A.5
-
48
-
-
0027661179
-
Metropolis Monte Carlo calculations of DNA structure using internal coordinates and NMR distance restraints: An alternative method for generating a high-resolution solution structure
-
Ulyanov NB, Schmitz U, James TL, (1993) Metropolis Monte Carlo calculations of DNA structure using internal coordinates and NMR distance restraints: An alternative method for generating a high-resolution solution structure. J Biomol NMR 3: 547-568.
-
(1993)
J Biomol NMR
, vol.3
, pp. 547-568
-
-
Ulyanov, N.B.1
Schmitz, U.2
James, T.L.3
-
49
-
-
0001398008
-
How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules?
-
Wang J, Cieplak P, Kollman PA, (2000) How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules? J Comput Chem 21: 1049-1074.
-
(2000)
J Comput Chem
, vol.21
, pp. 1049-1074
-
-
Wang, J.1
Cieplak, P.2
Kollman, P.A.3
-
50
-
-
0037442962
-
HADDOCK: a protein-protein docking aproach based on biochemical or biophysical information
-
Dominguez C, Boelens R, Bonvin AM, (2003) HADDOCK: a protein-protein docking aproach based on biochemical or biophysical information. J Am Chem Soc 125: 1731-1737.
-
(2003)
J Am Chem Soc
, vol.125
, pp. 1731-1737
-
-
Dominguez, C.1
Boelens, R.2
Bonvin, A.M.3
-
51
-
-
67849122319
-
Web 3DNA-a web server for the analysis, reconstruction, and visualization of three-dimensional nucleic-acid structures
-
Zheng G, Lu XJ, Olson WK, (2009) Web 3DNA-a web server for the analysis, reconstruction, and visualization of three-dimensional nucleic-acid structures. Nucleic Acids Res 37: W240-W246.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Zheng, G.1
Lu, X.J.2
Olson, W.K.3
-
52
-
-
0037080244
-
Rapid grid-based construction of the molecular surface and the use of induced surface charge to calculate reaction field energies: applications to the molecular systems and geometric objects
-
Rocchia W, Sridharan S, Nicholls A, Alexov E, Chiabrera A, et al. (2002) Rapid grid-based construction of the molecular surface and the use of induced surface charge to calculate reaction field energies: applications to the molecular systems and geometric objects. J Comput Chem 23: 128-137.
-
(2002)
J Comput Chem
, vol.23
, pp. 128-137
-
-
Rocchia, W.1
Sridharan, S.2
Nicholls, A.3
Alexov, E.4
Chiabrera, A.5
-
53
-
-
34248347847
-
Upgrade of the small-angle X-ray scattering beamline X33 at the European Molecular Biology Laboratory, Hamburg
-
Roessle MW, Klaering R, Ristau U, Robrahn B, Jahn D, et al. (2007) Upgrade of the small-angle X-ray scattering beamline X33 at the European Molecular Biology Laboratory, Hamburg. J Appl Crystallogr 40: S190-S194.
-
(2007)
J Appl Crystallogr
, vol.40
-
-
Roessle, M.W.1
Klaering, R.2
Ristau, U.3
Robrahn, B.4
Jahn, D.5
-
54
-
-
0141484613
-
PRIMUS: a Windows PC-based system for small-angle scattering data analysis
-
Konarev PV, Volkov VV, Sokolova AV, Koch MHJ, Svergun DI, (2003) PRIMUS: a Windows PC-based system for small-angle scattering data analysis. J Appl Crystallogr 36: 1277-1282.
-
(2003)
J Appl Crystallogr
, vol.36
, pp. 1277-1282
-
-
Konarev, P.V.1
Volkov, V.V.2
Sokolova, A.V.3
Koch, M.H.J.4
Svergun, D.I.5
-
55
-
-
0029185933
-
CRYSOL-a program to evaluate X-ray solution scattering of biological macromolecules from atomic coordinates
-
Svergun DI, Barberato C, Koch MHJ, (1995) CRYSOL-a program to evaluate X-ray solution scattering of biological macromolecules from atomic coordinates. J Appl Crystallogr 28: 768-773.
-
(1995)
J Appl Crystallogr
, vol.28
, pp. 768-773
-
-
Svergun, D.I.1
Barberato, C.2
Koch, M.H.J.3
-
56
-
-
0003448576
-
Nucleic Acids in Chemistry and Biology
-
Cambridge, UK, RSC Publishing, 3rd ed
-
Blackburn GM, Gait MJ, Loakes D, Willians DM, (2006) Nucleic Acids in Chemistry and Biology. Cambridge, UK RSC Publishing 3rd ed.
-
(2006)
-
-
Blackburn, G.M.1
Gait, M.J.2
Loakes, D.3
Willians, D.M.4
-
57
-
-
0000243829
-
PROCHECK - a program to check the stereochemical quality of protein structures
-
Laskowski RA, MacArthur MW, Moss DS, Thornton JM, (1993) PROCHECK - a program to check the stereochemical quality of protein structures. J Appl Crystallogr 26: 283-291.
-
(1993)
J Appl Crystallogr
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
MacArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
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