Boosting protein dynamics studies using quantitative nonuniform sampling NMR spectroscopy

Journal of Physical Chemistry B

Volumn 115, Issue 46, 2011, Pages 13740-13745

  Matsuki, Yoh ^a   Konuma, Tsuyoshi ^b   Fujiwara, Toshimichi ^a   Sugase, Kenji ^b  

^a OSAKA UNIVERSITY   (Japan)

^b SUNTORY INSTITUTE FOR BIOORGANIC RESEARCH   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ATOMIC SPECTROSCOPY; DYNAMICS; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PROCESSING; PROTEINS; SIGNAL PROCESSING;

ATOMIC RESOLUTION; CREB BINDING PROTEINS; DATA COLLECTION; FREQUENCY AND TIME DOMAINS; FREQUENCY DOMAINS; LIVING CELL; NMR RELAXATION; NONUNIFORM SAMPLING; PROCESSING METHOD; PROTEIN DYNAMICS; RELAXATION DISPERSION; RELAXATION MEASUREMENTS; SPECTRAL QUANTIFICATION; TIME-SCALES;

TIME DOMAIN ANALYSIS;

EID: 81555196391     PISSN: 15206106     EISSN: 15205207     Source Type: Journal    
DOI: 10.1021/jp2081116     Document Type: Article

References (33)

1. Karplus, M.; Kuriyan, J. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 6679-6685
2. Farrow, N. A.; Muhandiram, R.; Singer, A. U.; Pascal, S. M.; Kay, C. M.; Gish, G.; Shoelson, S. E.; Pawson, T.; Formankay, J. D.; Kay, L. E. Biochemistry 1994, 33, 5984-6003
3. Mittermaier, A.; Kay, L. E. Science 2006, 312, 224-228
4. Hwang, T. L.; van Zijl, P. C. M.; Mori, S. J. Biomol. NMR 1998, 11, 221-226
5. Dempsey, C. E. Prog. Nucl. Magn. Reson. Spectrosc. 2001, 39, 135-170
6. Sakakibara, D.; Sasaki, A.; Ikeya, T.; Hamatsu, J.; Hanashima, T.; Mishima, M.; Yoshimasu, M.; Hayashi, N.; Mikawa, T.; Walchli, M. Nature 2009, 458, 102-106
7. Korzhnev, D. M.; Salvatella, X.; Vendruscolo, M.; Di Nardo, A. A.; Davidson, A. R.; Dobson, C. M.; Kay, L. E. Nature 2004, 430, 586-590
8. Sugase, K.; Dyson, H. J.; Wright, P. E. Nature 2007, 447, 1021-1025
9. Jeannerat, D. J. Magn. Reson. 2007, 186, 112-122
10. Kazimierczuk, K.; Zawadzka, A.; Kozminski, W.; Zhukov, I. J. Magn. Reson. 2007, 188, 344-356
11. Stanek, J.; Kozminski, W. J. Biomol. NMR 2010, 47, 65-77
12. Hyberts, S. G.; Heffron, G. J.; Tarragona, N. G.; Solanky, K.; Edmonds, K. A.; Luithardt, H.; Fejzo, J.; Chorev, M.; Aktas, H.; Colson, K. J. Am. Chem. Soc. 2007, 129, 5108-5116
13. Mobli, M.; Maciejewski, M. W.; Gryk, M. R.; Hoch, J. C. Nat. Methods 2007, 4, 467-468
14. Hiller, S.; Ibraghimov, I.; Wagner, G.; Orekhov, V. Y. J. Am. Chem. Soc. 2009, 131, 12970-12978
15. Jaravine, V.; Ibraghimov, I.; Orekhov, V. Y. Nat. Methods 2006, 3, 605-607
16. Tugarinov, V.; Choy, W. Y.; Orekhov, V. Y.; Kay, L. E. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 622-627
17. Matsuki, Y.; Eddy, M. T.; Griffin, R. G.; Herzfeld, J. Angew. Chem., Int. Ed. 2010, 49, 9215-9218
18. Matsuki, Y.; Eddy, M. T.; Herzfeld, J. J. Am. Chem. Soc. 2009, 131, 4648-4656
19. Gerchberg, R. W. Opt. Acta 1974, 21, 709-720
20. Papoulis, A. IEEE Trans. Circuits Syst. 1975, 22, 735-742
21. Difrancia, G. T. J. Opt. Soc. Am. 1955, 45, 497-501
22. Jorge, P.; Ferreira, S. G. IEEE Trans. Signal Process 1994, 42, 2596-2606
23. Plevritis, S. K.; Macovski, A. Magn. Reson. Med. 1995, 34, 686-693
24. Stern, A. S.; Donoho, D. L.; Hoch, J. C. J. Magn. Reson. 2007, 188, 295-300
25. Radhakrishnan, I.; Perez-Alvarado, G. C.; Parker, D.; Dyson, H. J.; Montminy, M. R.; Wright, P. E. Cell 1997, 91, 741-752
26. Tollinger, M.; Skrynnikov, N. R.; Mulder, F. A.; Forman-Kay, J. D.; Kay, L. E. J. Am. Chem. Soc. 2001, 123, 11341-11352
27. Loria, J. P.; Rance, M.; Palmer, A. G. J. Am. Chem. Soc. 1999, 121, 2331-2332
28. Ishima, R.; Torchia, D. A. J. Biomol. NMR 2005, 32, 41-54
29. Carver, J. P.; Richards, R. E. J. Magn. Reson. 1972, 6, 89-105
30. Tollinger, M.; Kloiber, K.; Agoston, B.; Dorigoni, C.; Lichtenecker, R.; Schmid, W.; Konrat, R. Biochemistry 2006, 45, 8885-8893
31. Korzhnev, D. M.; Religa, T. L.; Banachewicz, W.; Fersht, A. R.; Kay, L. E. Science 2010, 329, 1312-1316
32. Kay, L. E.; Sprangers, R.; Gribun, A.; Hwang, P. M.; Houry, W. A. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 16678-16683
33. Hyberts, S. G.; Frueh, D. P.; Arthanari, H.; Wagner, G. J. Biomol. NMR 2009, 45, 283-294