The population genetics of X-autosome synthetic lethals and steriles

Genetics

Volumn 189, Issue 3, 2011, Pages 1011-1027

  Lachance, Joseph ^a,b   Johnson, Norman A ^c   True, John R ^a  

^a STONY BROOK UNIVERSITY   (United States)

^b UNIVERSITY OF PENNSYLVANIA   (United States)

^c UNIVERSITY OF MASSACHUSETTS   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALLELE; ARTICLE; AUTOSOME; GENE FREQUENCY; GENE LOCUS; GENE MUTATION; GENETIC LINKAGE; GENETIC VARIABILITY; LETHALITY; POPULATION DYNAMICS; POPULATION GENETICS; PRIORITY JOURNAL; SEX DIFFERENCE;

ALLELES; CHROMOSOMES, HUMAN, X; EVOLUTION, MOLECULAR; FEMALE; GENE FREQUENCY; GENETIC LOCI; GENETICS, POPULATION; HUMANS; INFERTILITY; MALE; MODELS, GENETIC; MUTATION; MUTATION RATE; SELECTION, GENETIC; SEX CHARACTERISTICS;

EID: 81355141743     PISSN: 00166731     EISSN: 19432631     Source Type: Journal    
DOI: 10.1534/genetics.111.131276     Document Type: Article

References (66)

1. Agresti, A., and B. A. Coull, 1998 Approximate is better than "exact" for interval estimation of binomial proportions. Am. Stat. 52: 119-126
2. Bengtsson, B. O., and F. B. Christiansen, 1983 A two-locus mutation-selection model and some of its evolutionary implications. Theor. Popul. Biol. 24: 59-77
3. Charlesworth, B., and D. Charlesworth, 2010 Elements of Evolutionary Genetics. Roberts & Company Publishers, Greenwood Village, CO.
4. Charlesworth, B., J. Coyne, and N. H. Barton, 1987 The relative rates of evolution of sex chromosomes and autosomes. Am. Nat. 130: 113-146
5. Christiansen, F. B., and O. Frydenberg, 1977 Selection-mutation balance for two nonallelic recessives producing an inferior double homozygote. Am. J. Hum. Genet. 29: 195-207
6. Costanzo, M., A. Baryshnikova, J. Bellay, Y. Kim, E. D. Spear et al., 2010 The genetic landscape of a cell. Science 327: 425-431
7. Coyne, J., and H. A. Orr, 2004 Speciation. Sinauer Associates, Sunderland, MA.
8. Crow, J. F., 1987 Population genetics history: a personal view. Annu. Rev. Genet. 21: 1-22
9. Crow, J. F., and M. Kimura, 1970 An Introduction to Population Genetics Theory. Harper & Row, New York.
10. Davierwala, A. P., J. Haynes, Z. Li, R. L. Brost, M. D. Robinson et al., 2005 The synthetic genetic interaction spectrum of essential genes. Nat. Genet. 37: 1147-1152
11. de Visser, J. A., and S. F. Elena, 2007 The evolution of sex: empirical insights into the roles of epistasis and drift. Nat. Rev. Genet. 8: 139-149
12. Dobzhansky, T., 1937 Genetics and the Origin of Species. Columbia University Press, New York.
13. Dobzhansky, T., 1946 Genetics of natural populations. Xiii. Recombination and variability in populations of Drosophila pseudoobscura. Genetics 31: 269-290
14. Eyre-Walker, A., and P. D. Keightley, 2007 The distribution of fitness effects of new mutations. Nat. Rev. Genet. 8: 610-618
15. Gavrilets, S., 2004 Fitness Landscapes and the Origin of Species. Princeton University Press, Princeton, NJ.
16. Gillespie, J. H., 1991 The Causes of Molecular Evolution. Oxford University Press, Oxford.
17. Gottipati, S., L. Arbiza, A. Siepel, A. G. Clark, and A. Keinan, 2011 Analyses of X-linked and autosomal genetic variation in population-scale whole genome sequencing. Nat. Genet. 43: 741-743
18. Haldane, J. B. S., 1922 Sex ratio and unisexual sterility in hybrid animals. J. Genet. 12: 101-109
19. Hartman, J. L., B. Garvick, and L. Hartwell, 2001 Principles for the buffering of genetic variation. Science 291: 1001-1004
20. Johnson, N. A., 2000a Gene interactions and the origins of species, pp. 197-212 in Epistasis and the Evolutionary Process, edited by J. Wolf, E. Brodie, and M. J. Wade,. Oxford University Press, New York.
21. Johnson, N. A., 2000b Speciation: Dobzhansky-Muller incompatibilities, dominance and gene interactions. Trends Ecol. Evol. 15: 480-482
22. Lachance, J., and J. R. True, 2010 X-autosome incompatibilities in Drosophila melanogaster: tests of Haldane's rule and geographic patterns within species. Evolution 64: 3035-3046
23. Laurie, C. C., 1997 The weaker sex is heterogametic: 75 years of Haldane's rule. Genetics 147: 937-951
24. Lehner, B., C. Crombie, J. Tischler, A. Fortunato, and A. G. Fraser, 2006 Systematic mapping of genetic interactions in Caenorhabditis elegans identifies common modifiers of diverse signaling pathways. Nat. Genet. 38: 896-903
25. Liao, C. Y., P. Wu, B. Hu, and K. K. Yi, 2001 Effects of genetic background and environment on QTLs and epistasis for rice (Oryza sativa L.) panicle number. Theor. Appl. Genet. 103: 104-111
26. Lindsley, D. L., and K. T. Tokuyasu, 1980 Spermatogenesis, pp. 226-294 in The Genetics and Biology of Drosophila, edited by M. Ashburner, and T. R. F. Wright. Academic Press, New York.
27. Lucchesi, J. C., 1968 Synthetic lethality and semi-lethality among functionally related mutants of Drosophila melanogaster. Genetics 59: 37-44
28. Mackay, T. F., 2004 The genetic architecture of quantitative traits: lessons from Drosophila. Curr. Opin. Genet. Dev. 14: 253-257
29. Mahowald, A. P., and M. P. Kambysellis, 1980 Oogenesis, pp. 141-225 in The Genetics and Biology of Drosophila, edited by M. Ashburner, and T. R. F. Wright. Academic Press, New York.
30. Manolio, T. A., F. S. Collins, N. J. Cox, D. B. Goldstein, L. A. Hindorff et al., 2009 Finding the missing heritability of complex diseases. Nature 461: 747-753
31. Masly, J. P., and D. C. Presgraves, 2007 High-resolution genomewide dissection of the two rules of speciation in Drosophila. PLoS Biol. 5: e243.
32. Moore, J. H., 2003 The ubiquitous nature of epistasis in determining susceptibility to common human diseases. Hum. Hered. 56: 73-82
33. Moore, J. H., F. W. Asselbergs, and S. M. Williams, 2010 Bioinformatics challenges for genome-wide association studies. Bioinformatics 26: 445-455
34. Muller, H. J., 1942 Isolating mechanisms, evolution and temperature. Biol. Symp. 6: 71-125
35. Nachman, M. W., and S. L. Crowell, 2000 Estimate of the mutation rate per nucleotide in humans. Genetics 156: 297-304
36. Ooi, S. L., X. Pan, B. D. Peyser, P. Ye, P. B. Meluh et al., 2006 Global synthetic-lethality analysis and yeast functional profiling. Trends Genet. 22: 56-63
37. Orr, H. A., 1993a Haldane's rule has multiple genetic causes. Nature 361: 532-533
38. Orr, H. A., 1993b A mathematical model of Haldane's rule. Evolution 47: 1606-1611
39. Orr, H. A., 1995 The population genetics of speciation: the evolution of hybrid incompatibilities. Genetics 139: 1805-1813
40. Otto, S. P., and T. Lenormand, 2002 Resolving the paradox of sex and recombination. Nat. Rev. Genet. 3: 252-261
41. Otto, S. P., and M. C. Whitlock, 1997 The probability of fixation in populations of changing size. Genetics 146: 723-733
42. Phillips, P. C., 2008 Epistasis-the essential role of gene interactions in the structure and evolution of genetic systems. Nat. Rev. Genet. 9: 855-867
43. Phillips, P. C., and N. A. Johnson, 1998 The population genetics of synthetic lethals. Genetics 150: 449-458
44. Presgraves, D. C., 2008 Sex chromosomes and speciation in Drosophila. Trends Genet. 24: 336-343
45. Roach, J. C., G. Glusman, A. F. Smit, C. D. Huff, R. Hubley et al., 2010 Analysis of genetic inheritance in a family quartet by whole-genome sequencing. Science 328: 636-639
46. Sanjuan, R., A. Moya, and S. F. Elena, 2004 The contribution of epistasis to the architecture of fitness in an RNA virus. Proc. Natl. Acad. Sci. USA 101: 15376-15379
47. Schilthuizen, M., M. C. Giesbers, and L. W. Beukeboom, 2011 Haldane's rule in the 21st century. Heredity 107: 95-102
48. Singh, N. D., A. M. Larracuente, and A. G. Clark, 2008 Contrasting the efficacy of selection on the X and autosomes in Drosophila. Mol. Biol. Evol. 25: 454-476
49. Tao, Y., S. Chen, D. L. Hartl, and C. C. Laurie, 2003 Genetic dissection of hybrid incompatibilities between Drosophila simulans and D. mauritiana. I. Differential accumulation of hybrid male sterility effects on the X and autosomes. Genetics 164: 1383-1397
50. Temin, R. G., H. U. Meyer, P. S. Dawson, and J. F. Crow, 1969 The influence of epistasis on homozygous viability depression in Drosophila melanogaster. Genetics 61: 497-519
51. Templeton, A. R., 2000 Epistasis and complex traits, pp. 41-57 in Epistasis and the Evolutionary Process, edited by J. B. Wolf, E. D. Brodie, and M. J. Wade. Oxford University Press, New York.
52. Thompson, V., 1986 Synthetic lethals: a critical review. Evol. Theory 8: 1-13
53. Tong, A. H., G. Lesage, G. D. Bader, H. Ding, H. Xu et al., 2004 Global mapping of the yeast genetic interaction network. Science 303: 808-813
54. Turelli, M., and D. J. Begun, 1997 Haldane's rule and X-chromosome size in Drosophila. Genetics 147: 1799-1815
55. Turelli, M., and H. A. Orr, 1995 The dominance theory of Haldane's rule. Genetics 140: 389-402
56. Turelli, M., and H. A. Orr, 2000 Dominance, epistasis and the genetics of postzygotic isolation. Genetics 154: 1663-1679
57. Van Dyken, J. D., and M. J. Wade, 2010 The genetic signature of conditional expression. Genetics 184: 557-570
58. Vicoso, B., and B. Charlesworth, 2006 Evolution on the X chromosome: unusual patterns and processes. Nat. Rev. Genet. 7: 645-653
59. Wade, M. J., 1992 Sewall Wright: gene interaction and the shifting balance theory, pp. 35-62 in Oxford Surveys in Evolutionary Biology, edited by D. Futuyma, and J. Anonovics. Oxford University Press, New York.
60. Wade, M. J., 2001 Epistasis, complex traits, and mapping genes. Genetica 112-113: 59-69
61. Weinreich, D. M., R. A. Watson, and L. Chao, 2005 Perspective: sign epistasis and genetic constraint on evolutionary trajectories. Evolution 59: 1165-1174
62. Whitlock, M. C., and D. Bourguet, 2000 Factors affecting the genetic load in Drosophila: synergistic epistasis and correlations among fitness components. Evolution 54: 1654-1660
63. Willis, J. H., and H. A. Orr, 1993 Increased heritable variation following population bottlenecks: the role of dominance. Evolution 47: 949-957
64. Wolf, J., E. Brodie, and M. J. Wade (Editors), 2000 Epistasis and the Evolutionary Process. Oxford University Press, New York.
65. Wu, C. I., and A. W. Davis, 1993 Evolution of postmating reproductive isolation: the composite nature of Haldane's rule and its genetic bases. Am. Nat. 142: 187-212
66. Yukilevich, R., J. Lachance, F. Aoki, and J. R. True, 2008 Longterm adaptation of epistatic genetic networks. Evolution 62: 2215-2235