Implementation of 3D spatial indexing and compression in a large-scale molecular dynamics simulation database for rapid atomic contact detection

BMC Bioinformatics

Volumn 12, Issue , 2011, Pages

  Toofanny, Rudesh D ^a   Simms, Andrew M ^b   Beck, David A C ^a,b,c   Daggett, Valerie ^a,b  

^a University of Washington   (United States)

^b UNIVERSITY OF WASHINGTON   (United States)

^c University of Washington   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ATOMIC INTERACTIONS; INDEX COMPRESSION; LARGE-SCALE MOLECULAR DYNAMICS; MOLECULAR DYNAMICS SIMULATIONS; NEIGHBOR DISCOVERY; SIMULATION ANALYSIS; SIMULATION SYSTEMS; TRAJECTORY COORDINATES;

ATOMS; BINS; DATABASE SYSTEMS; EMBEDDED SYSTEMS; MOLECULAR DYNAMICS; TRAJECTORIES;

INDEXING (OF INFORMATION);

PROTEIN; SACCHAROMYCES CEREVISIAE PROTEIN;

ALGORITHM; ARTICLE; CHEMISTRY; INFORMATION PROCESSING; MOLECULAR DYNAMICS; PROTEIN DATABASE; SACCHAROMYCES CEREVISIAE;

ALGORITHMS; DATA COMPRESSION; DATABASES, PROTEIN; MOLECULAR DYNAMICS SIMULATION; PROTEINS; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS;

EID: 81155157532     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-12-334     Document Type: Article

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