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Volumn 87, Issue 3, 2011, Pages 355-362

DNA extractions from deep subseafloor sediments: Novel cryogenic-mill-based procedure and comparison to existing protocols

Author keywords

Deep subsurface biosphere; DNA extraction; Sediment

Indexed keywords

ARTICLE; BACTERIAL CELL; CONTROLLED STUDY; CYTOLYSIS; DNA DETERMINATION; DNA EXTRACTION; DNA ISOLATION; DNA PURIFICATION; INTERMETHOD COMPARISON; NONHUMAN; PRIORITY JOURNAL; PROCESS DEVELOPMENT; SEDIMENT; SEPARATION TECHNIQUE;

EID: 81055155822     PISSN: 01677012     EISSN: 18728359     Source Type: Journal    
DOI: 10.1016/j.mimet.2011.09.015     Document Type: Article
Times cited : (30)

References (24)
  • 1
    • 33748927787 scopus 로고    scopus 로고
    • A molecular approach to the characterization of the eukaryotic communities of an extreme acidic environment: methods for DNA extraction and denaturing gradient gel electrophresis
    • Aguilera A., Gómez F., Lospitao E., Amils R. A molecular approach to the characterization of the eukaryotic communities of an extreme acidic environment: methods for DNA extraction and denaturing gradient gel electrophresis. Syst. Appl. Microbiol. 2006, 29:593-605.
    • (2006) Syst. Appl. Microbiol. , vol.29 , pp. 593-605
    • Aguilera, A.1    Gómez, F.2    Lospitao, E.3    Amils, R.4
  • 2
    • 0036022481 scopus 로고    scopus 로고
    • Marinitoga piezophila, sp. nov., a rod-shaped thermo-piezophilic bacterium isolated under high hydrostatic pressure from a deep-sea hydrothermal vent
    • Alain K., Marteinsson V.T., Miroshnichenko M., Bonch-Osmolovskaya E., Prieur D., Birrien J.L. Marinitoga piezophila, sp. nov., a rod-shaped thermo-piezophilic bacterium isolated under high hydrostatic pressure from a deep-sea hydrothermal vent. Int. J. Syst. Evol. Microbiol. 2002, 52:1331-1339.
    • (2002) Int. J. Syst. Evol. Microbiol. , vol.52 , pp. 1331-1339
    • Alain, K.1    Marteinsson, V.T.2    Miroshnichenko, M.3    Bonch-Osmolovskaya, E.4    Prieur, D.5    Birrien, J.L.6
  • 3
    • 0000429385 scopus 로고
    • DNA content of soil bacteria of different cell size
    • Bakken L.R., Olsen R.A. DNA content of soil bacteria of different cell size. Soil Biol. Biochem. 1989, 21:789-793.
    • (1989) Soil Biol. Biochem. , vol.21 , pp. 789-793
    • Bakken, L.R.1    Olsen, R.A.2
  • 4
    • 84857907660 scopus 로고    scopus 로고
    • in préparation. Caldiclava thermospodii gen. nov., sp. nov., a novel obligately thermophilic bacterium isolated from a hot soil environment of Saint-Paul island, Southern Indian Ocean.
    • Birrien, J.L., Bienvenu, N., Postec, A., Dupont, S., Prieur, D., Le Romancer, M., in préparation. Caldiclava thermospodii gen. nov., sp. nov., a novel obligately thermophilic bacterium isolated from a hot soil environment of Saint-Paul island, Southern Indian Ocean.
    • Birrien, J.L.1    Bienvenu, N.2    Postec, A.3    Dupont, S.4    Prieur, D.5    Le Romancer, M.6
  • 5
    • 0035206784 scopus 로고    scopus 로고
    • Quantification of bacterial subgroups in soil: comparison of DNA extracted directly from soil or from cells previously released by density gradient centrifugation
    • Courtois S., Frostegård A., Göransson P., Depret G., Jeannin P., Simonet P. Quantification of bacterial subgroups in soil: comparison of DNA extracted directly from soil or from cells previously released by density gradient centrifugation. Environ. Microbiol. 2001, 3:431-439.
    • (2001) Environ. Microbiol. , vol.3 , pp. 431-439
    • Courtois, S.1    Frostegård, A.2    Göransson, P.3    Depret, G.4    Jeannin, P.5    Simonet, P.6
  • 7
    • 0032982922 scopus 로고    scopus 로고
    • Thermococcus siculi sp. nov., a novel hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent at the Mid-Okinawa Trough
    • Grote R., Li L., Tamaoka J., Kato C., Horikoshi K., Antranikian G. Thermococcus siculi sp. nov., a novel hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent at the Mid-Okinawa Trough. Extremophiles 1999, 3:55-62.
    • (1999) Extremophiles , vol.3 , pp. 55-62
    • Grote, R.1    Li, L.2    Tamaoka, J.3    Kato, C.4    Horikoshi, K.5    Antranikian, G.6
  • 9
    • 50049107012 scopus 로고    scopus 로고
    • Significant contribution of Archaea to extant biomass in marine subsurface sediments
    • Lipp J.S., Morono Y., Inagaki F., Hinrichs K.U. Significant contribution of Archaea to extant biomass in marine subsurface sediments. Nature 2008, 454:991-994.
    • (2008) Nature , vol.454 , pp. 991-994
    • Lipp, J.S.1    Morono, Y.2    Inagaki, F.3    Hinrichs, K.U.4
  • 10
    • 33644871362 scopus 로고    scopus 로고
    • DNA extraction procedure: a critical issue for bacterial diversity assessment in marine sediments
    • Luna G.M., Dell'Anno A., Danovaro R. DNA extraction procedure: a critical issue for bacterial diversity assessment in marine sediments. Environ. Microbiol. 2006, 8:308-320.
    • (2006) Environ. Microbiol. , vol.8 , pp. 308-320
    • Luna, G.M.1    Dell'Anno, A.2    Danovaro, R.3
  • 11
    • 0001069722 scopus 로고    scopus 로고
    • A critical analysis of methods for determining the composition and biogeochemical activities of soil microbial communities in situ
    • Madsen E.L. A critical analysis of methods for determining the composition and biogeochemical activities of soil microbial communities in situ. Soil Biochem. 1996, 9:287-370.
    • (1996) Soil Biochem. , vol.9 , pp. 287-370
    • Madsen, E.L.1
  • 13
    • 0013838217 scopus 로고
    • Molecular weight of the DNA in the chromosomes of E. coli and B. subtilis
    • Massie H.R., Zimm B.H. Molecular weight of the DNA in the chromosomes of E. coli and B. subtilis. Proc. Natl. Acad. Sci. USA 1965, 54:1636-1641.
    • (1965) Proc. Natl. Acad. Sci. USA , vol.54 , pp. 1636-1641
    • Massie, H.R.1    Zimm, B.H.2
  • 14
    • 0032703237 scopus 로고    scopus 로고
    • Evaluation and optimization of DNA extraction and purification procedures for soil and sediment samples
    • Miller D.N., Bryant J.E., Madsen E.L., Ghiorse W.C. Evaluation and optimization of DNA extraction and purification procedures for soil and sediment samples. Appl. Environ. Microbiol. 1999, 65:4715-4724.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 4715-4724
    • Miller, D.N.1    Bryant, J.E.2    Madsen, E.L.3    Ghiorse, W.C.4
  • 15
    • 34247535716 scopus 로고    scopus 로고
    • Virus and prokaryote enumeration from planktonic aquatic environments by epifluorescence microscopy with SYBR Green I
    • Patel A., Noble R.T., Steele J.A., Schwalbach M.S., Hewson I., Fuhrman J.A. Virus and prokaryote enumeration from planktonic aquatic environments by epifluorescence microscopy with SYBR Green I. Nat. Protoc. 2007, 2:269-276.
    • (2007) Nat. Protoc. , vol.2 , pp. 269-276
    • Patel, A.1    Noble, R.T.2    Steele, J.A.3    Schwalbach, M.S.4    Hewson, I.5    Fuhrman, J.A.6
  • 20
    • 33947380915 scopus 로고    scopus 로고
    • Adaptations to energy stress dictate the ecology and evolution of the Archaea
    • Valentine D.L. Adaptations to energy stress dictate the ecology and evolution of the Archaea. Nat. Rev. Microbiol. 2007, 5:316-323.
    • (2007) Nat. Rev. Microbiol. , vol.5 , pp. 316-323
    • Valentine, D.L.1
  • 21
    • 0028842856 scopus 로고
    • Direct DNA extraction for PCR-mediated assays of soil organisms
    • Volossiouk T., Robb E.J., Nazar R.N. Direct DNA extraction for PCR-mediated assays of soil organisms. Appl. Environ. Microbiol. 1995, 61:3972-3976.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 3972-3976
    • Volossiouk, T.1    Robb, E.J.2    Nazar, R.N.3
  • 22
    • 70349793107 scopus 로고    scopus 로고
    • Bacterial and archaeal DNA extracted from inoculated experiments: Implication for the optimization of DNA extraction from deep-sea basalts
    • Wang H., Edwards K.J. Bacterial and archaeal DNA extracted from inoculated experiments: Implication for the optimization of DNA extraction from deep-sea basalts. Geomicrobiol. J. 2009, 26:463-469.
    • (2009) Geomicrobiol. J. , vol.26 , pp. 463-469
    • Wang, H.1    Edwards, K.J.2
  • 23
    • 0142091782 scopus 로고    scopus 로고
    • Assessment of bacterial community structure in the deep sub-seafloor biosphere by 16S rDNA-based techniques: a cautionary tale
    • Webster G., Newberry C.J., Fry J.C., Weightman A.J. Assessment of bacterial community structure in the deep sub-seafloor biosphere by 16S rDNA-based techniques: a cautionary tale. J. Microbiol. Methods 2003, 55:155-164.
    • (2003) J. Microbiol. Methods , vol.55 , pp. 155-164
    • Webster, G.1    Newberry, C.J.2    Fry, J.C.3    Weightman, A.J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.