Enzyme activities and metabolic profiles of soil microorganisms at KILN sites in Quercus spp. temperate forests of central Mexico

Applied Soil Ecology

Volumn 52, Issue 1, 2012, Pages 48-55

  Gómez Luna, Blanca Estela ^a   Ruiz Aguilar, Graciela Ma de la Luz ^a   Vázquez Marrufo, Gerardo ^b   Dendooven, Luc ^c   Olalde Portugal, Víctor ^d  

^a UNIVERSITY OF GUANAJUATO   (Mexico)

^b UNIVERSIDAD MICHOACANA DE SAN NICOLÁS DE HIDALGO   (Mexico)

^c DEPARTAMENTO DE FÍSICA   (Mexico)

^d Laboratorio de Interacciones Planta Virus   (Mexico)

Author keywords

BIOLOG; Charcoal production; Functional diversity; Soil quality

Indexed keywords

QUERCUS;

EID: 81055138194     PISSN: 09291393     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.apsoil.2011.10.010     Document Type: Article

References (62)

1. Abdelmagid H.M., Tabatabai M.A. Nitrate reductase activity of soils. Soil Biol. Biochem. 1987, 19:421-427.
2. Bending G.D., Turner M.K., Jones J.E. Interactions between crop residue and soil organic matter quality and the functional diversity of soil microbial communities. Soil Biol. Biochem. 2002, 34:1073-1082.
3. Boerner R.E.J., Brinkman J.A., Smith A. Seasonal variations in enzyme activity and organic carbon in soil of a burned and unburned hardwood forest. Soil Biol. Biochem. 2005, 37:1419-1426.
4. Bremner J.M. Nitrogen-total. Methods of Soil Analysis: Chemical Methods Part 3 1996, 1085-1122. Soil Science Society of America Inc., American Society of Agronomy, Inc., Madison, Wisconsin, USA. D.L. Sparks (Ed.).
5. Brookes P.C. The use of microbial parameters in monitoring soil pollution by heavy metals. Biol. Fertil. Soils 1995, 19:269-279.
6. Bundy J.G., Paton G.I., Campbell C.D. Combined microbial community level and single species biosensor responses to monitor recovery of oil polluted soil. Soil Biol. Biochem. 2004, 36:1149-1159.
7. Burns R.G. Enzyme activity in soil: location and possible role in microbial ecology. Soil Biol. Biochem. 1982, 14:423-427.
8. Calbrix R., Laval K., Barray S. Analysis of the potential functional diversity of the bacterial community in soil: a reproducible procedure using sole-carbon-source utilization profiles. Eur. J. Soil Biol. 2005, 41:11-20.
9. Campbell C.D., Grayston S.J., Hirst D.J. Use of rhizosphere carbon sources in sole carbon source tests to discriminate soil microbial communities. J. Microbiol. Methods 1997, 30:33-41.
10. Chen J., Xuliang Z., Xie H., Bai Z., Qi H., Zhang H. Associated impact of inorganic fertilizers and pesticides on microbial communities in soils. World J. Microbiol. Biotechnol. 2007, 23:23-29.
11. Choi K.H., Dobbs F.C. Comparison of two kinds of Biolog microplates (GN and ECO) in their ability to distinguish among aquatic microbial communities. J. Microbiol. Methods 1999, 36:203-213.
12. Classen A.T., Boyle S.I., Haskins K.E., Overby S.T., Hart S.C. Community-level physiological profiles of bacteria and fungi: plate type and incubation temperature influences on contrasting soils. FEMS Microbiol. Ecol. 2003, 44:319-328.
13. CONABIO, 2007. The Mexican National Board for Biodiversity Study and Conservation. http://www.conabio.gob.mx/rpcm/rpcmdatos.hts.
14. Coomes O.T., Burt G.J. Peasant charcoal production in the Peruvian Amazon: rainforest use and economic reliance. For. Ecol. Manage. 2001, 140:39-50.
15. Dick, R.P., 1994. Soil enzyme activities as indicators of soil quality. In: Doran, J.W. (Ed.), Defining Soil Quality for A Sustainable Environment, SSSA Special Publication no. 35, Madison WI, pp. 107-124.
16. Degens B.P. Microbial functional diversity can be influenced by the addition of simple organic substrates to soil. Soil Biol. Biochem. 1998, 30:1981-1988.
17. Deng S.P., Tabatabai M.A. Cellulase activity of soils. Soil Biol. Biochem. 1994, 26:1347-1354.
18. Decker K.L.M., Boerner R.E.J., Morris S.J. Scale-dependent patterns of soil enzyme activity in forested landscape. Can. J. For. Res. 1999, 29:232-241.
19. Eivazi F., Tabatabai M.A. Glucosidases and galactosidases in soils. Soil Biol. Biochem. 1988, 20:601-606.
20. Eivazi F., Bayan M.R. Effects of long-term prescribed burning on the activity of select soil enzymes in an oak-hickory forest. Can. J. For. Res. 1996, 26:1799-1804.
21. Fulthorpe R.R., Allen D.G. Evaluation of Biolog MT plates for aromatic and chloroaromatic substrate utilization tests. Can. J. Microbiol. 1994, 40:1067-1071.
22. Garland J.L., Mills A. Classification and characterization of heterotrophic microbial communities on the basis of patterns of community-level sole-carbon-source utilization. Appl. Environ. Microbiol. 1991, 57:2351-2359.
23. Garland J.L. Patterns of potential C source utilization by rhizosphere communities. Soil Biol. Biochem. 1996, 28:223-230.
24. Garland J.L. Analytical approaches to the characterization of samples of microbial communities using patterns of potential C source utilization. Soil Biol. Biochem. 1996, 28:213-221.
25. Garland J.L. Minireview. Analysis and interpretation of community-level physiological profiles in microbial ecology. FEMS Microbiol. Ecol. 1997, 24:289-300.
26. Gee G.W., Bauder J.W. Particle size analysis. Methods of Soil Analysis. Part 1. Physical and Mineralogical Methods 1986, 383-411. Soil Science Society of America Inc., American Society of Agronomy, Inc., Madison, Wisconsin, USA. second ed. A. Klute (Ed.).
27. Giller K.E., Witter E., McGrath S.P. Toxicity of heavy metals to microorganisms and microbial processes in agricultural soil: a review. Soil Biol. Biochem. 1998, 30:1389-1414.
28. Glaser B., Lehmann J., Zech W. Ameliorating physical and chemical properties of highly weathered soils in the tropics with charcoal-a review. Biol. Fertil. Soils 2002, 35:219-230.
29. Gómez-Luna B.E., Rivera-Mosqueda M.C., Dendooven L., Vázquez-Marrufo G., Olalde-Portugal V. Charcoal production at kiln sites affects C and N dynamics and associated soil microorganisms in Quercus spp. temperate forests of central Mexico. Appl. Soil Ecol. 2009, 41:50-58.
30. Govaerts B., Mezzalama M., Unno Y., Sayre K.D., Luna-Guido M., Vanherck K., Dendooven L., Deckers J. Influence of tillage, residue management, and crop rotation on soil microbial biomass and catabolic diversity. Appl. Soil Ecol. 2007, 37:18-30.
31. Graham M.H., Haynes R.J. Catabolic diversity of soil communities under sugarcane and other land uses estimated by Biolog and substrate-induced respiration methods. Appl. Soil Ecol. 2005, 29:155-164.
32. Guerrero C., Mataix-Solera J., Gomez I., Garcia-Orenes F., Jordan M.M. Microbial recolonization and chemical changes in a soil heated at different temperatures. Int. J. Wildland Fire 2005, 14:385-400.
33. Guinto D.F., Saffigna P.G., Xu Z.H., House A.P.N., Perera M.C.S. Soil nitrogen mineralization and organic matter composition revealed by 13C NMR spectroscopy under repeated prescribed burning in eucalypt forests of south-east Queensland. Aust. J. Soil Res. 1999, 37:123-135.
34. Hart S.C., DeLuca T.H., Newman G.S., MacKenzie M.D., Boyle S.I. Post-fire vegetative dynamics as drivers of microbial community structure and function in forest soils. For. Ecol. Manage. 2005, 220:166-184.
35. Klose S., Tabatabai M.A. Urease activity of microbial biomass in soils. Soil Biol. Biochem. 1999, 31:205-211.
36. Konopka A., Oliver L., Turco The use of carbon substrate utilization patterns in environmental and ecological microbiology. Microb. Ecol. 1998, 35:701-718.
37. Mabuhay J.A., Nakagoshi N., Horikoshi T. Microbial biomass and abundance after forest fire in pine forests in Japan. Ecol. Res. 2003, 18:431-441.
38. Manlay R.J., Cadet P., Thioulouse J., Chotte J.-L. Relationships between abiotic and biotic soil properties during fallow periods in the Sudanian zone of Senegal. Appl. Soil Ecol. 2000, 14:89-101.
39. Nepstad D., Schwartzman S., Bamberger B., Santilli M., Ray D., Schlesinger P., Lefebvre P., Alencar A., Prinz E., Fiske G., Rolla A. Inhibition of Amazon deforestation and fire by parks and indigenous lands. Conserv. Biol. 2006, 20:65-73.
40. Oguntunde P.G., Fosu M., Ajayi A.E., van de Giesen N. Effects of charcoal production on maize yield, chemical properties and texture of soil. Biol. Fertil. Soils 2004, 39:295-299.
41. Olsen S.R., Cole C.V., Watanabe F.S., Dean L.A. Estimation of Available Phosphorus in Soils by Extraction with Sodium Bicarbonate 1954, U.S. Government Printing Office, Washington, DC, (USDA circular no. 939).
42. Parham J.A., Deng S.P. Detection, quantification and characterization of β-glucosaminidase activity in soil. Soil Biol. Biochem. 2000, 32:1183-1190.
43. Pietikäinen J., Fritze H. Microbial biomass and activity in the humus layer following burning: short-term effects of two different fires. Can. J. For. Res. 1993, 23:1275-1285.
44. Pietikäinen J., Hiukka R., Fritze H. Does short-term heating of forest humus changes its properties as a substrate for microbes?. Soil Biol. Biochem. 2000, 32:277-288.
45. Plenecassagne, A.E., Romero, E.F., López, C.B., 1997. Análisis de suelos, aguas, plantas. Manual de Laboratorio. CENID-RASPA. INIFAP-SARH. Gómez Palacio, Durango Dgo, México, p. 108.
46. Pitman R.M. Wood ash use in forestry - a review of the environmental impacts. Forestry 2006, 79:563-588.
47. Prieto-Fernández A., Acea M.J., Carballas T. Soil microbial extractable C and N after wildfire. Biol. Fertil. Soils 1998, 27:132-142.
48. Pulido, S.J., Aguilar, N.A., 1992. Química de suelos, Manual de prácticas. Universidad Autónoma de Chapingo, México, pp. 51-65.
49. Ratcliff A.W., Busse M.D., Shestak C.J. Changes in microbial community structure following herbicide (glyphosate) additions to forest soils. Appl. Soil Ecol. 2006, 34:114-124.
50. Schinner F., Mersi W.V. Xylanase-CM-cellulase- and invertase activity in soil: an improved method. Soil Biol. Biochem. 1990, 22:511-515.
51. Serrasolsas I., Khanna P.K. Changes in heated and autoclaved forest soils of S.E. Australia. I. Carbon and nitrogen. Biogeochemistry 1995, 29:3-24.
52. Signell S.A., Abrams M.D., Hovis J.C., Henry S.W. Impact of multiple fires on stand structure and tree regeneration in central Appalachian oak forests. For. Ecol. Manage. 2005, 218:146-158.
53. Staddon W.J., Duchensne L.C., Trevors J.T. Microbial diversity and community structure of post-disturbance forest soils as determined by sole carbon-source utilization patterns. Microb. Ecol. 1997, 34:125-130.
54. Staddon W.J., Duchense L.C., Trevors J.T. Impact of clear-cutting and prescribed burning on microbial diversity and community structure in Jack Pine (Pinus banksiana Lamb.) clear-cut using Biolog Gram-negative microplates. World J. Microbiol. Biotechnol. 1998, 14:119-123.
55. Thomas G.W. Soil pH and soil acidity. Methods of Soil Analysis: Chemical Methods, Part 3 1996, 475-490. Agronomy, Inc., Madison, Wisconsin, USA. D.L. Sparks (Ed.).
56. Vásquez-Murrieta M.S., Migueles-Garduño I., Franco-Hernández O., Govaerts B., Dendooven L. C and N mineralization and microbial biomass in heavy-metal contaminated soil. Eur. J. Soil Biol. 2006, 42:74-81.
57. Vázquez-Marrufo G., Serrato-Flores R., Frías-Hernández J.T., Jiménez-Magdaleno L.A., Olalde-Portugal V. Microsite soil changes associated with traditional charcoal production in Quercus temperate forest in central Mexico. Phyton 2003, 72:85-99.
58. Viti C., Giovannetti L. Characterization of cultivable heterotrophic bacterial communities in Cr-polluted and unpolluted soils using Biolog and ARDRA approaches. Appl. Soil Ecol. 2005, 28:101-112.
59. Wittmann C., Kähkönen M.A., Ilevesniemi H., Kurola J., Salkinoja-Salonen M.S. Areal activities and stratification of hydrolytic enzymes involved in the biochemical cycles of carbon, nitrogen, sulphur and phosphorus in podsolized boreal forest soils. Soil Biol. Biochem. 2004, 36:425-433.
60. Yao X.-H., Min H., Lü Z.-H., Yuan H.-P. Influence of acetamiprid on soil enzymatic activities and respiration. Eur. J. Soil Biol. 2006, 42:120-126.
61. Zackrisson O., Nilsson M.C., Wardle D.A. Key ecological function of charcoal from wildfire in boreal forest. Oikos 1996, 77:10-19.
62. Zak J.C., Willing M.R., Moorhead D.L., Wildman H.G. Functional diversity of microbial communities: a quantitative approach. Soil Biol. Biochem. 1994, 26:1101-1108.