Development and evaluation of a reverse transcription loop-mediated isothermal amplification assay for H3N8 equine influenza virus

Journal of Virological Methods

Volumn 178, Issue 1-2, 2011, Pages 239-242

  Nemoto, Manabu ^a   Yamanaka, Takashi ^a   Bannai, Hiroshi ^a   Tsujimura, Koji ^a   Kondo, Takashi ^a   Matsumura, Tomio ^a  

^a EQUINE RESEARCH INSTITUTE   (Japan)

Author keywords

Diagnosis; Equine influenza virus; H3N8; Reverse transcription loop mediated isothermal amplification (RT LAMP)

Indexed keywords

HEMAGGLUTININ; VIRUS RNA;

ARTICLE; DILUTION; GEL ELECTROPHORESIS; GENE TARGETING; HORSE; INFECTION CONTROL; INFLUENZA VIRUS A H3N8; LABORATORY DIAGNOSIS; LIMIT OF DETECTION; NONHUMAN; NOSE SMEAR; NUCLEOTIDE SEQUENCE; PATHOGENESIS; PRIORITY JOURNAL; PROCESS DEVELOPMENT; REACTION TIME; RESPIRATORY TRACT DISEASE; REVERSE TRANSCRIPTION LOOP MEDIATED ISOTHERMAL AMPLIFICATION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA EXTRACTION; SENSITIVITY AND SPECIFICITY; TEMPERATURE SENSITIVITY; VIRUS DETECTION; VIRUS STRAIN;

ANIMALS; DNA PRIMERS; HORSE DISEASES; HORSES; INFLUENZA A VIRUS, H3N8 SUBTYPE; JAPAN; MOLECULAR DIAGNOSTIC TECHNIQUES; NASAL MUCOSA; NUCLEIC ACID AMPLIFICATION TECHNIQUES; ORTHOMYXOVIRIDAE INFECTIONS; SENSITIVITY AND SPECIFICITY; VETERINARY MEDICINE; VIROLOGY;

EQUIDAE; EQUINE INFLUENZA VIRUS;

EID: 80955142721     PISSN: 01660934     EISSN: 18790984     Source Type: Journal    
DOI: 10.1016/j.jviromet.2011.07.015     Document Type: Article

References (30)

1. Barbic L., Madic J., Turk N., Daly J. Vaccine failure caused an outbreak of equine influenza in Croatia. Vet. Microbiol. 2009, 133:164-171.
2. Bryant N.A., Rash A.S., Woodward A.L., Medcalf E., Helwegen M., Wohlfender F., Cruz F., Herrmann C., Borchers K., Tiwari A., Chambers T.M., Newton J.R., Mumford J.A., Elton D.M. Isolation and characterisation of equine influenza viruses (H3N8) from Europe and North America from 2008 to 2009. Vet. Microbiol. 2011, 147:19-27.
3. Callinan, I., 2008. Equine Influenza: The August 2007 Outbreak in Australia. Commonwealth of Australia. http://www.equineinfluenzainquiry.gov.au/.
4. Chambers T.M., Shortridge K.F., Li P.H., Powell D.G., Watkins K.L. Rapid diagnosis of equine influenza by the Directigen FLU-A enzyme immunoassay. Vet. Rec. 1994, 135:275-279.
5. Daly J.M., Lai A.C., Binns M.M., Chambers T.M., Barrandeguy M., Mumford J.A. Antigenic and genetic evolution of equine H3N8 influenza A viruses. J. Gen. Virol. 1996, 77:661-671.
6. Donofrio J.C., Coonrod J.D., Chambers T.M. Diagnosis of equine influenza by the polymerase chain reaction. J. Vet. Diagn. Invest. 1994, 6:39-43.
7. Foord A.J., Selleck P., Colling A., Klippel J., Middleton D., Heine H.G. Real-time RT-PCR for detection of equine influenza and evaluation using samples from horses infected with A/equine/Sydney/2007 (H3N8). Vet. Microbiol. 2009, 137:1-9.
8. Fouchier R.A., Bestebroer T.M., Herfst S., Van Der Kemp L., Rimmelzwaan G.F., Osterhaus A.D. Detection of influenza A viruses from different species by PCR amplification of conserved sequences in the matrix gene. J. Clin. Microbiol. 2000, 38:4096-4101.
9. Lai A.C., Rogers K.M., Glaser A., Tudor L., Chambers T. Alternate circulation of recent equine-2 influenza viruses (H3N8) from two distinct lineages in the United States. Virus Res. 2004, 100:159-164.
10. Lu Z., Chambers T.M., Boliar S., Branscum A.J., Sturgill T.L., Timoney P.J., Reedy S.E., Tudor L.R., Dubovi E.J., Vickers M.L., Sells S., Balasuriya U.B. Development and evaluation of one-step TaqMan real-time reverse transcription-PCR assays targeting nucleoprotein, matrix, and hemagglutinin genes of equine influenza virus. J. Clin. Microbiol. 2009, 47:3907-3913.
11. Martella V., Elia G., Decaro N., Di Trani L., Lorusso E., Campolo M., Desario C., Parisi A., Cavaliere N., Buonavoglia C. An outbreak of equine influenza virus in vaccinated horses in Italy is due to an H3N8 strain closely related to recent North American representatives of the Florida sub-lineage. Vet. Microbiol. 2007, 121:56-63.
12. McCabe V.J., Sindle T., Daly J.M. Evaluation of the Binax NOW Flu A test kit for the rapid detection of equine influenza virus. Vet. Rec. 2006, 158:164-165.
13. Mori Y., Nagamine K., Tomita N., Notomi T. Detection of loop-mediated isothermal amplification reaction by turbidity derived from magnesium pyrophosphate formation. Biochem. Biophys. Res. Commun. 2001, 289:150-154.
14. Morley P.S., Bogdan J.R., Townsend H.G., Haines D.M. Evaluation of Directigen Flu A assay for detection of influenza antigen in nasal secretions of horses. Equine Vet. J. 1995, 27:131-134.
15. Nagamine K., Hase T., Notomi T. Accelerated reaction by loop-mediated isothermal amplification using loop primers. Mol. Cell. Probes 2002, 16:223-229.
16. Nemoto M., Imagawa H., Tsujimura K., Yamanaka T., Kondo T., Matsumura T. Detection of equine rotavirus by reverse transcription loop-mediated isothermal amplification (RT-LAMP). J. Vet. Med. Sci. 2010, 72:823-826.
17. Newton J.R., Daly J.M., Spencer L., Mumford J.A. Description of the outbreak of equine influenza (H3N8) in the United Kingdom in 2003, during which recently vaccinated horses in Newmarket developed respiratory disease. Vet. Rec. 2006, 158:185-192.
18. Notomi T., Okayama H., Masubuchi H., Yonekawa T., Watanabe K., Amino N., Hase T. Loop-mediated isothermal amplification of DNA. Nucleic Acids Res. 2000, 28:E63.
19. Oxburgh L., Hagstrom A. A PCR based method for the identification of equine influenza virus from clinical samples. Vet. Microbiol. 1999, 67:161-174.
20. Qi T., Guo W., Huang W., Dai L., Zhao L., Li H., Li X., Zhang X., Wang Y., Yan Y., He N., Xiang W. Isolation and genetic characterization of H3N8 equine influenza virus from donkeys in China. Vet. Microbiol. 2010, 144:455-460.
21. Quinlivan M., Cullinane A., Nelly M., Van Maanen K., Heldens J., Arkins S. Comparison of sensitivities of virus isolation, antigen detection, and nucleic acid amplification for detection of equine influenza virus. J. Clin. Microbiol. 2004, 42:759-763.
22. Quinlivan M., Dempsey E., Ryan F., Arkins S., Cullinane A. Real-time reverse transcription PCR for detection and quantitative analysis of equine influenza virus. J. Clin. Microbiol. 2005, 43:5055-5057.
23. Rozek W., Purzycka M., Polak M.P., Gradzki Z., Zmudzinski J.F. Genetic typing of equine influenza virus isolated in Poland in 2005 and 2006. Virus. Res. 2009, 145:121-126.
24. Sugita S., Matsumura T. Detection of Equine-2 Influenza Virus by the Real-Time PCR. J. Equine Sci. 2003, 14:111-117.
25. Tomita N., Mori Y., Kanda H., Notomi T. Loop-mediated isothermal amplification (LAMP) of gene sequences and simple visual detection of products. Nat. Protoc. 2008, 3:877-882.
26. van Maanen C., Cullinane A. Equine influenza virus infections: an update. Vet. Q. 2002, 24:79-94.
27. Virmani N., Bera B.C., Singh B.K., Shanmugasundaram K., Gulati B.R., Barua S., Vaid R.K., Gupta A.K., Singh R.K. Equine influenza outbreak in India (2008-2009): virus isolation, sero-epidemiology and phylogenetic analysis of HA gene. Vet. Microbiol. 2010, 143:224-237.
28. Webster R.G. Are equine 1 influenza viruses still present in horses?. Equine Vet. J. 1993, 25:537-538.
29. Yamanaka T., Niwa H., Tsujimura K., Kondo T., Matsumura T. Epidemic of equine influenza among vaccinated racehorses in Japan in 2007. J. Vet. Med. Sci. 2008, 70:623-625.
30. Yamanaka T., Tsujimura K., Kondo T., Matsumura T. Evaluation of antigen detection kits for diagnosis of equine influenza. J. Vet. Med. Sci. 2008, 70:189-192.