Novel species of celoporthe from eucalyptus and syzygium trees in china and indonesia

Mycologia

Volumn 103, Issue 6, 2011, Pages 1384-1410

  Chen, Shuaifei ^a,b   Gryzenhout, Marieka ^a   Roux, Jolanda ^a   Xie, Yaojian ^b   Wingfield, Michael J ^a   Zhou, Xudong ^a,b  

^a UNIVERSITY OF PRETORIA   (South Africa)

^b RESEARCH INSTITUTE OF FORESTRY   (China)

Author keywords

Cryphonectriaceae; Myrtales; Plantation forestry; Southeastern asia; Stem canker pathogens

Indexed keywords

CLONE; CONIFEROUS TREE; FUNGAL DISEASE; INFECTIOUS DISEASE; MORPHOLOGY; PATHOGENICITY; PHYLOGENETICS; PLANTATION FORESTRY;

ARTICLE; ASCOMYCETES; CHINA; CLASSIFICATION; CYTOLOGY; EUCALYPTUS; EUGENIA; GENETICS; INDONESIA; MICROBIOLOGY; PATHOGENICITY; PHYLOGENY;

ASCOMYCOTA; CHINA; EUCALYPTUS; EUGENIA; INDONESIA; PHYLOGENY;

CHINA; INDONESIA;

EID: 80755183737     PISSN: 00275514     EISSN: 15572536     Source Type: Journal    
DOI: 10.3852/11-006     Document Type: Article

References (51)

1. Anagnostakis SL. 1987. Chestnut blight: the classical problem of an introduced pathogen. Mycologia 79: 23-37, doi:10.2307/3807741.
2. Anagnostakis SL. 1992. Chestnuts and the introduction of chestnut blight. Ann Rep N Nut Grow Assoc 83:39-42.
3. Begoude BAD, Gryzenhout M, Wingfield MJ, Roux J. 2010. Aurifilum, a new fungal genus in the Cryphonectriaceae from Terminalia species in Cameroon. Anton Leeuw Int J G 98:263-278, doi:10.1007/s10482-010-9467-8
4. Carbone I, Kohn LM. 1999. A method for designing primer sets for speciation studies in filamentous ascomycetes. Mycologia 91:553-556, doi:10.2307/3761358
5. Castlebury LA, Rossman AY, Jaklitsch WJ, Vasilyeva LN. 2002. A preliminary overview of the Diaporthales based on large subunit nuclear ribosomal DNA sequences. Mycologia 94:1017-1031, doi:10.2307/3761867
6. Cheewangkoon R, Groenewald JZ, Summerell BA, Hyde KD, To-anun C, Crous PW. 2009. Myrtaceae, a cache of fungal biodiversity. Persoonia 23:55-85.
7. Chen SF, Gryzenhout M, Roux J, Xie YJ, Wingfield MJ, Zhou XD. 2010. Identification and pathogenicity of Chrysoporthe cubensis on Eucalyptus and Syzygium species in south China. Plant Dis 94:1143-1150, doi:10.1094/PDIS-94-9-1143
8. Fairchild D. 1913. The discovery of the chestnut bark disease in China. Science 38:297-299, doi:10.1126/science.38.974.297
9. Farris JS, Kallersjo M, Kluge AG, Bult C. 1995. Testing significance of incongruence. Cladistics 10:315-319, doi:10.1111/j.1096-0031.1994.tb00181.x
10. Felsenstein J. 1985. Confidence intervals on phylogenetics: an approach using bootstrap. Evolution 39:783-791, doi:10.2307/2408678.
11. Glass NL, Donaldson GC. 1995. Development of primersets designed for use with the PCR to amplify conserved genes from filamentous ascomycetes. Appl Environ Microbiol 61:1323-1330.
12. Gryzenhout M, Myburg H, van der Merwe NA, Wingfield BD, Wingfield MJ. 2004. Chrysoporthe, a new genus to accommodate Cryphonectria cubensis. Stud Mycol 50: 119-142.
13. Gryzenhout M, Myburg H, Wingfield BD, Wingfield MJ. 2006a. Cryphonectriaceae (Diaporthales), a new family including Cryphonectria, Chrysoporthe, Endothia and allied genera. Mycologia 98:239-249, doi:10.3852/mycologia.98.2.239
14. Gryzenhout M, Rodas CA, Menas Portales J, Clegg P, Wingfield BD, Wingfield MJ. 2006b. Novel hosts of the Eucalyptus canker pathogen Chrysoporthe cubensis and a new Chrysoporthe species from Colombia. Mycol Res 110: 833-845, doi:10.1016/j.mycres.2006.02.010.
15. Gryzenhout M, Tarigan M, Clegg PA, Wingfield MJ. 2010. Cryptometrion aestuescens gen. sp. nov. (Cryphonectriaceae) pathogenic to Eucalyptus in Indonesia. Australas Plant Path 39:161-169, doi:10.1071/AP09077
16. Gryzenhout M, Wingfield BD, Wingfield MJ. 2009. Taxonomy, phylogeny and ecology of bark-inhabiting and tree pathogenic fungi in the Cryphonectriaceae. St Paul, Minnesota: APS Press. 119 p.
17. Guindon S, Gascuel O. 2003. A simple, fast and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52:696-704, doi:10.1080/10635150390235520
18. Heath R, Gryzenhout M, Roux J, Wingfield MJ. 2006. Discovery of the canker pathogen Chrysoporthe austroafricana on native Syzygium spp. in South Africa. Plant Dis 90:433-438, doi:10.1094/PD-90-0433
19. Hillis DM, Huelsenbeck JP. 1992. Signal, noise and reliability in molecular phylogenetic analyses. J Hered 83:189-195.
20. Hodges CS, Alfenas AC, Ferreira FA. 1986. The conspecificity of Cryphonectria cubensis and Endothia eugeniae. Mycologia 78:343-350, doi:10.2307/3793037
21. Huelsenbeck JP, Bull JJ, Cunningham CW. 1996. Combining data in phylogenetic analysis. Trends Ecol Evol 11: 152-158, doi:10.1016/0169-5347(96)10006-9
22. Katoh K, Misawa K, Kuma K, Miyata T. 2002. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res 30: 3059-3066, doi:10.1093/nar/gkf436
23. Kobayashi T, Itô K. 1956. Two new species of Endothia. Ann Phytopathol Soc Japan 21:151-152.
24. Myburg H, Gryzenhout M, Wingfield BD, Milgroom MG, Shigeru K, Wingfield MJ. 2004. DNA sequence data and morphology define Cryphonectria species in Europe, China and Japan. Can J Bot 82: 1730-1743, doi:10.1139/b04-135
25. Myburg H, Gryzenhout M, Wingfield BD, Wingfield MJ. 2002. β-tubulin and Histone H3 gene sequences distinguish Cryphonectria cubensis from South Africa, Asia and South America. Can J Bot 80:590-596, doi:10.1139/b02-03
26. Myburg H, Gryzenhout M, Wingfield BD, Wingfield MJ. 2003. Conspecificity of Endothia eugeniae and Cryphonectria cubensis: a reevaluation based on morphology and DNA sequence data. Mycoscience 44:187-196.
27. Myburg H, Wingfield BD, Wingfield MJ. 1999. Phylogeny of Cryphonectria cubensis and allied species inferred from DNA analysis. Mycologia 91:243-250, doi:10.2307/3761369
28. Nakabonge G, Gryzenhout M, Roux J, Wingfield BD, Wingfield MJ. 2006a. Celoporthe dispersa gen. et sp. nov. from native Myrtales in South Africa. Stud Mycol 55:255-267, doi:10.3114/sim.55.1.255
29. Nakabonge G, Roux J, Gryzenhout M, Wingfield MJ. 2006b. Distribution of Chrysoporthe canker pathogens on Eucalyptus and Syzygium species in eastern and southern Africa. Plant Dis 90:734-740, doi:10.1094/PD-90-0734
30. Nylander JAA. 2004. MrModeltest 2.3. Program distributed by the author. Uppsala, Sweden: Evolutionary Biology Centre, Uppsala Univ.
31. Posada D, Crandall KA. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14:817-818, doi:10.1093/bioinformatics/14.9.817
32. Rayner RW. 1970. A mycological colour chart. Kew, Surrey, UK: Commonwealth Mycological Institute and British Mycological Society. 34 p.
33. Rehner SA, Samuels GJ. 1994. Taxonomy and phylogeny of Gliocladium analysed from nuclear large subunit ribosomal DNA sequences. Mycol Res 98:625-634, doi:10.1016/S0953-7562(09)80409-7
34. Rodas CA, Gryzenhout M, Myburg H, Wingfield BD, Wingfield MJ. 2005. Discovery of the Eucalyptus canker pathogen Chrysoporthe cubensis on native Miconia (Melastomataceae) in Colombia. Plant Path 54:460-470, doi:10.1111/j.1365-3059.2005.01223.x
35. Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574, doi:10.1093/bioinformatics/btg180
36. SAS Institute Inc. 1999. SAS/STAT 8 users' guide. Cary, North Carolina: SAS Institute Inc.
37. Sharma JK, Mohanan C, Florence EJM. 1985. Occurrence of Cryphonectria canker disease of Eucalyptus in Kerala, India. Ann Appl Biol 106:265-276, doi:10.1111/j.1744-7348.1985.tb03116.x
38. Shear CL, Stevens NE. 1913. The chestnut blight parasite (Endothia parasitica) from China. Science 38:295-297, doi:10.1126/science.38.974.295
39. Shear CL, Stevens NE. 1916. The discovery of the chestnut blight parasite (Endothia parasitica) and other chestnut fungi in Japan. Science 43:173-176, doi:10.1126/science. 43.1101.173-a
40. Slippers B, Crous PW, Denman S, Coutinho TA, Wingfield BD, Wingfield MJ. 2004. Combined multiple gene genealogies and phenotypic characters differentiate several species previously identified as Botryosphaeria dothidea. Mycologia 96:83-101, doi:10.2307/3761991
41. Slippers B, Stenlid J, Wingfield MJ. 2005. Emerging pathogens: Fungal host jumps following anthropogenic introduction. Trends Ecol Evol 20:420-421, doi:10.1016/j.tree.2005.05.002.
42. Swofford DL. 2002. PAUP*4.0: phylogenetic analysis using parsimony (*and other methods). Sunderland, Massachusetts: Sinauer Associates.
43. Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: molecular evolutionary genetics analysis (MEGA) software. Mol Biol Evol 24:1596-1599, doi:10.1093/molbev/msm092
44. Teng SC. 1934. Notes on Sphaeriales from China. Sinensia 4:359-433.
45. van der Merwe NA, Gryzenhout M, Steenkamp ET, Wingfield BD, Wingfield MJ. 2010. Multigene phylogenetic and population differentiation data confirm the existence of a cryptic species within Chrysoporthe cubensis. Fungal Biol 114:966-979, doi:10.1016/j.funbio. 2010.09.007
46. Vermeulen M, Gryzenhout M, Wingfield MJ, Roux J. 2011. New records of Cryphonectriaceae from southern Africa including Latruncellus aurorae gen. sp. nov. Mycologia 103:554-569, doi:10.3852/10-283
47. Vilgalys R, Hester M. 1990. Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. J Bacteriol 172:4238-4246.
48. White TJ, Bruns T, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis AM, Gelfand DH, Sninsky JJ, White TJ, eds. PCR protocols: a guide to methods and applications. San Diego: Academic Press. p 315-322.
49. Wingfield MJ. 2003. Increasing threat of diseases to exotic plantation forests in the southern hemisphere: lessons from Cryphonectria canker. Australas Plant Path 32: 133-139, doi:10.1071/AP03024
50. Zhang N, Blackwell M. 2001. Molecular phylogeny of dogwood anthracnose fungus (Discula destructiva) and the Diaporthales. Mycologia 93:355-365, doi:10.2307/3761657
51. Zhou X, Xie Y, Chen SF, Wingfield MJ. 2008. Diseases of eucalypt plantations in China: challenges and opportunities. Fungal Divers 32:1-7.