Polymorphism and parent-of-origin effects on gene expression of CAST, leptin and DGAT1 in cattle

Meat Science

Volumn 90, Issue 2, 2012, Pages 507-510

  Niciura, Simone Cristina Méo ^a   Ibelli, Adriana Mércia Guaratini ^b   Gouveia, Gisele Veneroni ^b   Gromboni, Juliana Gracielle Gonzaga ^b   Rocha, Marina Ibelli Pereira ^b   de Souza, Marcela Maria ^b   de Mello, Suelen Scarpa ^a   Regitano, Luciana Correia de Almeida ^a  

^a EMBRAPA CERRADOS   (Brazil)

^b FEDERAL UNIVERSITY OF SÃO CARLOS   (Brazil)

Author keywords

Bovine; Carcass traits; CAST; Differential allele expression; Leptin; Meat quality

Indexed keywords

BOVINE; CARCASS TRAITS; CAST; DIFFERENTIAL ALLELE EXPRESSION; LEPTIN; MEAT QUALITY;

HISTOLOGY; HORMONES; MEATS; TISSUE;

GENE EXPRESSION;

BOS; BOVINAE;

CALCIUM BINDING PROTEIN; CALPASTATIN; DIACYLGLYCEROL ACYLTRANSFERASE; LEPTIN;

ALLELE; ANIMAL; ARTICLE; BODY COMPOSITION; CATTLE; GENE EXPRESSION REGULATION; GENETICS; HETEROZYGOTE; HOMOZYGOTE; INHERITANCE; MEAT; METABOLISM; SINGLE NUCLEOTIDE POLYMORPHISM;

ALLELES; ANIMALS; BODY COMPOSITION; CALCIUM-BINDING PROTEINS; CATTLE; DIACYLGLYCEROL O-ACYLTRANSFERASE; GENE EXPRESSION REGULATION; HETEROZYGOTE; HOMOZYGOTE; INHERITANCE PATTERNS; LEPTIN; MEAT; POLYMORPHISM, SINGLE NUCLEOTIDE;

EID: 80555131169     PISSN: 03091740     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.meatsci.2011.08.005     Document Type: Article

References (24)

1. Andersen C.L., Jensen J.L., Orntoft T.F. Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer Research 2004, 64:5245-5250.
2. Braunschweig M.H. Short communication: duplication in the 5'-flanking region of the beta-lactoglobulin gene is linked to the BLG A allele. Journal of Dairy Science 2007, 90:5780-5783.
3. Clop A., Marcq F., Takeda H., Pirottin D., Tordoir X., Bibé B., et al. A mutation creating a potential illegitimate microRNA target site in the myostatin gene affects muscularity in sheep. Nature Genetics 2006, 38:813-818.
4. Debeljak M., Susnik S., Marinsek-Logar R., Medrano J.F., Dovc P. Allelic differences in bovine kappa-CN gene which may regulate gene expression. Pflügers Archiv 2000, 439:R4-R6.
5. Evans H.E., Sack W.O. Prenatal development of domestic and laboratory mammals: growth curves, external features and selected references. Zentralblatt für Veterinärmedizin. Reihe C 1973, 2:11-45.
6. Geesink G.H., Koohmaraie M. Effect of calpastatin on degradation of myofibrillar proteins by mu-calpain under postmortem conditions. Journal of Animal Science 1999, 77:685-2692.
7. Khatib H. Is it genomic imprinting or preferential expression?. Bioessays 2007, 29:1022-1028.
8. Kononoff P.J., Deobald H.M., Stewart E.L., Laycock A.D., Marquess F.L. The effect of a leptin single nucleotide polymorphism on quality grade, yield grade, and carcass weight of beef cattle. Journal of Animal Science 2005, 83:927-932.
9. Kramer K.M., Carr M.S., Schmidt V.J., Cushing B.S. Parental regulation of central patterns of estrogen receptor alpha. Neuroscience 2006, 142:165-173.
10. Kuehn C., Edel C., Weikard R., Thaller G. Dominance and parent-of-origin effects of coding and non-coding alleles at the acylCoA-diacylglycerol-acyltransferase (DGAT1) gene on milk production traits in German Holstein cows. BMC Genetics 2007, 8:62.
11. T method. Methods 2001, 25:402-408.
12. Lo H.S., Wang Z., Hu Y., Yang H.H., Gere S., Buetow K.H., et al. Allelic variation in gene expression is common in the human genome. Genome Research 2003, 13:1855-1862.
13. Muráni E., Ponsuksili S., Seyfert H.M., Shi X., Wimmers K. Dual effect of a single nucleotide polymorphism in the first intron of the porcine secreted phosphoprotein 1 gene: Allele-specific binding of C/EBP beta and activation of aberrant splicing. BMC Molecular Biology 2009, 10:96.
14. Neugebauer N., Räder I., Schild H.J., Zimmer D., Reinsch N. Evidence for parent-of-origin effects on genetic variability of beef traits. Journal of Animal Science 2010, 88:523-532.
15. Pfaffl M.W., Horgan G.W., Dempfle L. Relative expression software tool (REST) for group-wise comparison and statistical analysis of relative expression results in real-time PCR. Nucleic Acids Research 2002, 30:e36.
16. Pfaffl M.W., Tichopad A., Prgomet C., Neuvians T.P. Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper-Excel-based tool using pair-wise correlations. Biotechnology Letters 2004, 26:509-515.
17. Ramakers C., Ruijter J.M., Deprez R.H., Moorman A.F. Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data. Neuroscience Letters 2003, 339:62-66.
18. Robinson T.L., Sutherland I.A., Sutherland J. Validation of candidate bovine reference genes for use with real-time PCR. Veterinary Immunology and Immunopathology 2007, 115:160-165.
19. Ruvinsky A. Basics of gametic imprinting. Journal of Animal Science 1999, 77:228-237.
20. Sato T., Fukazawa Y., Kojima H., Ohta Y., Iguchi T. Multiple mechanisms are involved in apoptotic cell death in the mouse uterus and vagina after ovariectomy. Reproductive Toxicology 2003, 17:289-297.
21. Schenkel F.S., Miller S.P., Jiang Z., Mandell I.B., Ye X., Li H., et al. Association of a single nucleotide polymorphism in the calpastatin gene with carcass and meat quality traits of beef cattle. Journal of Animal Science 2006, 84:291-299.
22. Thaller G., Kühn C., Winter A., Ewald G., Bellmann O., Wegner J., et al. DGAT1, a new positional and functional candidate gene for intramuscular fat deposition in cattle. Animal Genetics 2003, 34:354-357.
23. Vandesompele J., Preter K., Pattyn F., Poppe B., Van Roy N., Paepe A., et al. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biology 2002, 3. (research0034.1-0034.11).
24. Wittkopp P.J., Haerum B.K., Clark A.G. Parent-of-origin effects on mRNA expression in Drosophila melanogaster not caused by genomic imprinting. Genetics 2006, 173:1817-1821.