A high performance multiple sequence alignment system for pyrosequencing reads from multiple reference genomes

Journal of Parallel and Distributed Computing

Volumn 72, Issue 1, 2012, Pages 83-93

  Saeed, Fahad ^a   Perez Rathke, Alan ^b   Gwarnicki, Jaroslaw ^b   Berger Wolf, Tanya ^b   Khokhar, Ashfaq ^b  

^a NATIONAL HEART LUNG AND BLOOD INSTITUTE   (United States)

^b University of Illinois at Chicago   (United States)

Author keywords

Computational biology; Genome alignment and mapping; Multiple sequence alignment; Parallel algorithms; Pyrosequencing

Indexed keywords

ALIGNMENT ALGORITHMS; CLUSTER OF WORKSTATIONS; COMPUTATIONAL BIOLOGY; DOMAIN DECOMPOSITIONS; EXECUTION TIME; GENOME ALIGNMENT; HAPLOTYPES; HIGH QUALITY; MAPPING ALGORITHMS; MULTIPLE ALIGNMENT; MULTIPLE REFERENCES; MULTIPLE SEQUENCE ALIGNMENTS; PROBLEM SIZE; PYROSEQUENCING; RESEQUENCING;

BIOINFORMATICS; CLUSTERING ALGORITHMS; CONFORMAL MAPPING; DOMAIN DECOMPOSITION METHODS; GENES; PARALLEL ALGORITHMS; PARALLEL ARCHITECTURES;

ALIGNMENT;

EID: 80455122790     PISSN: 07437315     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jpdc.2011.08.001     Document Type: Article

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