Estimating amino acid substitution models: A comparison of Dayhoff's estimator, the resolvent approach and a maximum likelihood method

Molecular Biology and Evolution

Volumn 19, Issue 1, 2002, Pages 8-13

  Muller T ^a   Spang, R ^a   Vingron, M ^a  

^a GERMAN CANCER RESEARCH CENTER DKFZ   (Germany)

Author keywords

Amino acid replacement; Amino acid score matrix; Maximum likelihood; Protein evolution

Indexed keywords

AMINO ACID;

ALGORITHM; AMINO ACID SUBSTITUTION; ARTICLE; GENE FREQUENCY; GENE MUTATION; GENE SEQUENCE; GENETIC PROCEDURES; INTERMETHOD COMPARISON; MOLECULAR EVOLUTION; PROTEIN STRUCTURE;

EID: 0036134748     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a003985     Document Type: Article

References (14)

1. Distance measures in terms of substitution processes
2. Asynchronous distance between homologous DNA sequences
3. Statistical analysis of hominoid molecular evolution
4. Amino acid substitution during functionally constrained divergent evolution of protein sequences
5. A model of evolutionary change in protein
6. Exhaustive matching of the entire protein sequence database
7. The rapid generation of mutation data matrices from protein sequences
8. Tertiary structural constraints on protein evolutionary diversity: Templates, key residues and structure prediction
9. Amino acid substitutions in structurally related proteins