Gene Expression is Highly Regulated in Early Developing Fruit of Apple

Plant Molecular Biology Reporter

Volumn 29, Issue 4, 2011, Pages 885-897

  Soria Guerra, Ruth Elena ^a,b   Rosales Mendoza, Sergio ^a,b   Gasic, Ksenija ^a,c   Wisniewski, Michael E ^d   Band, Mark ^a   Korban, Schuyler S ^a  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^b UNIVERSIDAD AUTÓNOMA DE SAN LUIS POTOSÍ   (Mexico)

^c CLEMSON UNIVERSITY   (United States)

^d APPALACHIAN FRUIT RESEARCH STATION   (United States)

Author keywords

Fruit development; Functional annotation; Gene expression; Malus domestica; Microarray analysis

Indexed keywords

MALUS; MALUS X DOMESTICA;

EID: 80255129350     PISSN: 07359640     EISSN: 15729818     Source Type: Journal    
DOI: 10.1007/s11105-011-0300-y     Document Type: Article

References (50)

1. Aharoni A, O'Connell AP (2002) Gene expression analysis of strawberry achene and receptacle maturation using DNA microarrays. J Exp Bot 55: 2073-2087.
2. Aharoni A, Vorst O (2002) DNA microarrays for functional plant genomics. Plant Mol Biol 48: 99-118.
3. Aharoni A, Keizer LC, van Den Broeck HC, Blanco-Portales R, Munoz-Blanco J, Bois G, Smit P, De Vos RC, O'Connell AP (2002) Novel insight into vascular, stress, and auxin-dependent and -independent gene expression programs in strawberry, a non-climacteric fruit. Plant Physiol 129: 1019-1031.
4. Asai T, Tena G, Plotnikova J, Willmann MR, Chiu W-L, Gomez-Gomez L, Boller T, Ausubel FM, Sheen J (2002) MAP kinase signalling cascade in Arabidopsis innate immunity. Nature 415: 977-983.
5. Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G (2000) Gene ontology tool for the unification of biology: the gene ontology consortium. Nat Genet 25: 25-29.
6. Barthelson RA, Qaisar U, Galbraith DW (2010) Functional analysis of the Gossypium arboretum genome. Plant Mol Biol Rep 28: 334-343.
7. Bieleski RL (1982) Sugar alcohols. In: Loewus FA, Tanner W (eds) Plant carbohydrates I. Intracellular carbohydrates. Encyclopedia of plant physiology new series, vol 13A. Springer, New York, pp 158-192.
8. Bonaldo MF, Lennon G, Soares MB (1996) Normalization and subtraction: two approaches to facilitate gene discovery. Genome Res 6: 791-806.
9. Boudolf V, Vlieghe K, Beemster GT, Magyar Z, Torres Acosta JA, Maes S, van Der Schueren E, Inze D, De Veylder L (2004) The plant-specific cyclin-dependent kinase CDKB1; 1 and transcription factor E2Fa-DPa control the balance of mitotically dividing and endoreduplicating cells in Arabidopsis. Plant Cell 16: 2683-2692.
10. Chi X, Yang Q, Lu Y, Wang J, Zhang Q, Pan L, Chen M, He Y, Yu S (2011) Genome-wide analysis of fatty acid desaturases in soybean (Glycine max). Plant Mol Biol Rep. doi: 10. 1007/s11105-010-0284-z.
11. Coombe BG (1976) Development of fleshy fruits. Ann Rev Plant Physiol 27: 507-528.
12. Denne MP (1960) The growth of apple fruitlets and the effect of early thinning on fruit development. Ann Bot 4: 397-406.
13. Denne MP (1963) Fruit development and some tree factors affecting it. NZ J Bot 1: 265-294.
14. Dimick PS, Hoskin JC (1983) Review of apple flavor-state of the art. Crit Rev Food Sci Nutr 4: 387-409.
15. Dong YH, Janssen BJ, Bieleski LRF, Atkinson RG, Morris BAM, Gardner RC (1997) Isolating and characterizing genes differentially expressed early in apple fruit development. J Am Soc Hortic Sci 122: 752-757.
16. Eulgem T, Rushton PJ, Robatzek S, Somssich IE (2000) The WRKY superfamily of plant transcription factors. Trends Plant Sci 5: 199-206.
17. Evans RC, Campbell CS (2002) The origin of the apple subfamily (Maloideae; Rosaceae) is clarified by DNA sequence data from duplicated GBSSI genes. Am J Bot 89: 1478-1484.
18. Fellman JK, Miller TW, Mattinson DS, Mattheis JP (2000) Factors that influence biosynthesis of volatile flavor compounds in apple fruits. HortScience 35: 1026-1033.
19. Gandía M, Conesa A, Ancillo G, Gadea J, Forment J, Pallás V, Flores R, Duran-Vila N, Moreno P, Guerri J (2007) Transcriptional response of Citrus aurantifolia to infection by Citrus tristeza virus. Virology 367: 298-306.
20. Gasic K, Hernandez A, Korban SS (2004) RNA extraction from different apple tissues rich in polyphenols and polysaccharides for cDNA library construction. Plant Mol Biol Rep 22: 437-438.
21. Gasic K, Gonzalez DO, Thimmapuram J, Liu L, Malnoy M, Gong G, Han Y, Vodkin LO, Aldwinckle HS, Carroll NJ, Orvis KS, Goldsbrough P, Clifton S, Pape D, Fulton L, Martin J, Theising B, Wisniewski ME, Fazio G, Feltus FA, Korban SS (2009) Comparative analysis and functional annotation of a large expressed sequence tag collection of apple. Plant Genome 2: 23-38.
22. Gillaspy G, Ben-David H, Gruissem W (1993) Fruit: a developmental perspective. Plant Cell 5: 1439-1451.
23. Hellens RP, Allan A, Friel E, Bolitho K, Grafton K, Templeton MD, Karunairetnam S, Gleave AP, Laing WA (2005) Transient expression vectors for functional genomics, quantification of promoter activity and RNA silencing in plants. Plant Methods 1: 13.
24. Henrissat B, Callebaut I, Fabrega S, Lehn P, Mornon JP, Davies G (1995) Conserved catalytic machinery and the prediction of a common fold for several families of glycosyl hydrolases. Proc Natl Acad Sci USA 92: 7090-7094.
25. Janssen BJ, Thodey K, Schaffer RJ, Alba R, Balakrishnan L, Bishop R, Bowen JH, Crowhurst RN, Gleave AP, Ledger S, McArtney S, Pichler FB, Snowden KC, Ward S (2008) Global gene expression analysis of apple fruit development from the floral bud to ripe fruit. BMC Plant Biol 8: 16.
26. John ME, Keller G (1995) Characterization of mRNA for a proline-rich protein of cotton fiber. Plant Physiol 108: 669-676.
27. Jose-Estanyol M, Ruiz-Avila L, Puigdomenech P (1992) A maíz embryo-specific genes encodes a proline-rich and hydrophobic protein. Plant Cell 4: 413-423.
28. Kanzaki H, Saitoh A, Ito S, Fujisawa S, Kamoun S, Katou H, Yoshioka H, Terauchi R (2003) Cytosolic HSP90 and HSP70 are essential components of INF1-mediated hypersensitive response and non-host resistance to Pseudomonas cichorii in Nicotiana benthamiana. Mol Plant Pathol 4: 383-391.
29. Lee YP, Yu GH, Seo YS, Han SE, Choi YO, Kim D, Mok IG, Kim WT, Sung SK (2007) Microarray analysis of apple gene expression engaged in early fruit development. Plant Cell Rep 26: 917-926.
30. Lemaire-Chamley M, Petit J, Garcia V, Just D, Baldet P, Germain V, Fagard M, Mouassite M, Cheniclet C, Rothan C (2005) Changes in transcriptional profiles are associated with early fruit tissue specialization in tomato. Plant Physiol 139: 750-769.
31. Liu Y, Burch-Smith T, Schiff M, Feng S, Dinesh-Kumar SP (2004) Molecular chaperone HSP90 associates with resistance protein N and its signalling proteins SGT1 and Rar1 to modulate an innate immune response in plants. J Biol Chem 279: 2101-2108.
32. Loescher WH, Marlo GC, Kennedy RA (1982) Sorbitol metabolism and source-sink interconversions in developing apple leaves. Plant Physiol 70: 335-339.
33. McGhie TK, Hunt M, Barnett LE (2005) Cultivar and growing region determine the antioxidant polyphenolic concentration and composition of apples grown in New Zealand. J Agr Food Chem 53: 3065-3070.
34. Moyle R, Fairbairn DJ, Ripi J, Crowe M, Botella JR (2005) Developing pineapple fruit has a small transcriptome dominated by metallothionin. J Exp Bot 56: 101-112.
35. Newcomb RD, Crowhurst RN, Gleave AP, Rikkerink EH, Allan AC, Beuning LL, Bowen JH, Gera E, Jamieson KR, Janssen BJ, Laing WA, McArtney S, Nain B, Ross GS, Snowden KC, Souleyre EJ, Walton EF, Yauk YK (2006) Analyses of expressed sequence tags from apple. Plant Physiol 141: 147-166.
36. Panthee DR, Marois JJ, Wright DL, Narváez D, Yuan JS, Stewart CN Jr (2009) Differential expression of genes in soybean in response to the causal agent of Asian soybean rust (Phakopsora pachyrhizi Sydow) is soybean growth stage-specific. Theor Appl Genet 118: 359-370.
37. Park S, Sugimoto N, Larson MD, Beaudry R, van Nocker S (2006) Identification of genes with potential roles in apple fruit development and biochemistry through large-scale statistical analysis of expressed sequence tags. Plant Physiol 141: 811-824.
38. Percy AE, O'Brien IEW, Jameson PE, Melton LD, MacRae EA, Redgwell RK (1996) Xyloglucan endotransglycosylase activity during fruit development and ripening of apple and kiwifruit. Physiol Plant 96: 43-50.
39. Piechulla B, Glick R, Bahl H, Melis A, Gruissem W (1987) Changes in photosynthetic capacity and photosynthetic protein pattern during tomato fruit ripening. Plant Physiol 84: 911-917.
40. Potts SM, Kushad MM, Rayburn AL, Korban SS (2011) Genetic diversity and characterization of a large collection of Malus germplasm using simple sequence repeats (SSRss). Plant Breed (in press).
41. Riechmann JL, Heard J, Martin G, Reuber L, Jiang C-Z, Keddie J, Adam L, Pineda O, Ratcliffe OJ, Samaha RR, Creelman R, Pilgrim M, Broun P, Zhang JZ, Ghandehari D, Sherman BK, Yu G-L (2000) Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science 299: 2105-2110.
42. Rothan C, Just D, Gaudillère JP, Moing A, Dirlewanger E, Svanella L, Monet R (1998) Isolation and characterization of cDNAs differentially expressed during early peach (Prunus persica (L) batsch) fruit development. Acta Hortic 465: 99-106.
43. Schaffer RJ, Friel EN, Souleyre EJ, Bolitho K, Thodey K, Ledger S, Bowen JH, Ma JH, Nain B, Cohen D, Gleave AP, Crowhurst RN, Janssen BJ, Yao JL, Newcomb RD (2007) A genomics approach reveals that aroma production in apple is controlled by ethylene predominantly at the final step in each biosynthetic pathway. Plant Physiol 144: 1899-1912.
44. Schenk PM, Kazan K, Wilson I, Anderson JP, Richmond T, Somerville SC, Manners JM (2000) Coordinated plant defense responses in Arabidopsis revealed by microarrays analysis. Proc Natl Acad Sci USA 97: 11655-11660.
45. Shinozaki K, Yamaguchi-Shinozaki K (2000) Molecular responses to dehydration and low temperature, differences and cross-talk between two stress signaling pathways. Molecular responses to dehydration and low temperature: differences and cross-talk between two stress signaling pathways. Curr Opin Plant Biol 3: 217-223.
46. Soares MB, Bonaldo MF, Jelene P, Su L, Lawton L, Efstratiadis A (1994) Construction and characterization of a normalized cDNA library. Proc Natl Acad Sci USA 91: 228-232.
47. Stolf-Moreira R, Lemos EGM, Carareto-Alves L, Marcondes J, Pereira SS, Rolla AAP, Pereira RM, Neumaier N, Binneck E, Abdelnoor RV et al. (2011) Transcriptional profiles of roots of different soybean genotypes subjected to drought stress. Plant Mol Biol Rep 29: 19-34.
48. Thompson DS, Davies WJ, Ho LC (1998) Regulation of tomato fruit growth by epidermal cell wall enzymes. Plant Cell Environ 21: 589-599.
49. Treharne KJ, Quinlan JD, Knight JN, Ward DA (1985) Hormonal regulation of fruit development in apple: a mini-review. Plant Growth Regul 3: 125-132.
50. Yang G, Zhou R, Tang T, Chen X, Ouyang J, He L, Li W, Chen S, Guo M, Li X et al (2011) Gene expression profiles in response to salt stress in Hibiscus tiliaceus. Plant Mol Biol Rep. doi: 10. 1007/s11105-010-0267-0.