Transcriptional Profiles of Roots of Different Soybean Genotypes Subjected to Drought Stress

Plant Molecular Biology Reporter

Volumn 29, Issue 1, 2011, Pages 19-34

  Stolf Moreira, Renata ^a   Lemos, Eliana G M ^a   Carareto Alves, Lúcia ^a   Marcondes, Jackson ^a   Pereira, Selma S ^b   Rolla, Amanda A P ^b   Pereira, Rodrigo M ^a   Neumaier, Norman ^c   Binneck, Eliseu ^c   Abdelnoor, Ricardo V ^c   de Oliveira, Maria C N ^c   Marcelino, Francismar C ^c   Farias, José R B ^c   Nepomuceno, Alexandre L ^c  

^a Paulist State University Via de Acesso Prof Paulo Donato Castellane s/n ^*  (Brazil)

^b STATE UNIVERSITY OF LONDRINA   (Brazil)

^c EMBRAPA CERRADOS   (Brazil)

Author keywords

Glycine max; Microarray; Quantitative PCR; Water stress

Indexed keywords

GLYCINE MAX;

EID: 79251556298     PISSN: 07359640     EISSN: 15729818     Source Type: Journal    
DOI: 10.1007/s11105-010-0203-3     Document Type: Article

References (48)

1. Abe H, Urao T, Ito T, Seki M, Shinozaki K, Yamaguchi-Shinozaki K (2003) Arabidopsis AtMYC2 (bHLH) and AtMYB2 (MYB) function as transcriptional activators in abscisic acid signaling. Plant Cell 15: 63-78.
2. Alsheikh MK, Svensson JT, Randall SK (2005) Phosphorylation regulated ion-binding is a property shared by the acidic subclass dehydrins. Plant Cell Environ 28: 1114-1122.
3. Brazma A, Hingamp P, Quackenbush J, Sherlock G, Spellman P, Stoeckert C, Aach J, Ansorge W, Ball CA, Causton HC (2001) Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. Nature Genet 29: 365-371.
4. Cao WH, Liu J, He X-J, Mu R-L, Zhou H-L, Chen S-Y, Zhang J-S (2007) Modulation of ethylene responses affects plant salt-stress responses. Plant Physiol 143: 707-719.
5. Choi D-W, Zhu B, Close TJ (1999) The barley (Hordeum vulgare L.) dehydrin multigene family: sequences, allele types, chromosome assignments, and expression characteristics of 11 Dhn genes of cv Dicktoo. Theor Appl Genet 98: 1234-1247.
6. Chu G, Narasimhan B, Tibshirani R, Tusher V (2001) SAM "significance analysis of microarrays". Users guide and technical document.
7. Clement M, Lambert A, Herouart D, Boncompagni E (2008) Identification of new up-regulated genes under drought stress in soybean nodules. Gene 426: 15-22.
8. Cleveland WS (1979) Robust locally weighted regression and smoothing scatterplots. Jour Americ Statistic Assoc 74: 829-836.
9. Degenkolbe T, Do PD, Zuther E, Repsilber D, Walther D, Hincha DK, Kohl KI (2009) Expression profiling of rice cultivars differing in their tolerance to long-term drought stress. Plant Mol Biol 69: 133-153.
10. Duan H, Schuler MA (2005) Differential expression and evolution of the Arabidopsis CYP86A subfamily. Plant Physiol 137: 1067-1081.
11. Dure L III (1993) A repeating 11-mer amino acid motif and plant desiccation. Plant J 3: 363-369.
12. Ehlting J, Sauveplane V, Olry A (2008) An extensive (co-) expression analysis tool for the cytochrome P450 superfamily in Arabidopsis thaliana. BMC Plant Biol 8: 47.
13. Ginzinger DG (2002) Gene quantification using real-time quantitative PCR: an emerging technology hits the mainstream. Experim Hematol 30: 503-512.
14. Gorantla M, Babu PR, Lachagari VBR, Reddy AMM, Wusirika R, Bennetzen JL, Reddy AR (2007) Identification of stress-responsive genes in an indica rice (Oryza sativa L.) using ESTs generated from drought-stressed seedlings. J Exp Bot 58: 253-265.
15. Hannah MA, Wiese D, Freund S et al (2006) Natural genetic variation of freezing tolerance in Arabidopsis. Plant Physiol 142: 98-112.
16. Hazen SP, Pathan MS, Sanchez A et al (2005) Expression profiling of rice segregating for drought tolerance QTLs using a rice genome array. Funct Integr Genomics 5: 104-116.
17. He XJ, RL MU, Cao WH, Zhang ZG, Zhang JS, Chen SY (2005) AtNAC2, a transcription factor downstream of ethylene and auxin signaling pathways, is involved in salt stress response and lateral root development. Plant J 44: 903-916.
18. Hundertmark M, Hincha DK (2008) LEA (Late Embryogenesis Abundant) proteins and their encoding genes in Arabidopsis thaliana. BMC Genomics 9: 118.
19. Kim J-Y, Park SJ, Jang B, Jung C-H, Ahn SJ, Goh C-H, Cho K, Han O, Kang H (2007) Functional characterization of a glycine-rich RNA-binding protein 2 in Arabidopsis thaliana under abiotic stress conditions. Plant J 50: 439-451.
20. Kron AP, Souza GM, Ribeiro RV (2008) Water deficiency at different developmental stages of Glycine max can improve drought tolerance. Bragantia 67: 43-49.
21. Lawlor DW (2002) Carbon and nitrogen assimilation in relation to yield: mechanisms are the key to understanding production systems. J Exp Bot 53: 773-787.
22. Lawlor DW, Cornic G (2002) Photosynthetic carbon assimilation and associated metabolism in relation to water deficits in higher plants. Plant, Cell and Environ 25: 275-294.
23. Markandeya G, Babu PR, Reddy Lachagari VB et al (2007) Identification of stress-responsive genes in an indica rice (Oryza sativa L.) using ESTs generated from drought-stressed seedlings. J Exp Bot 58: 253-265.
24. Maruyama K, Sakuma Y, Kasuga M, Ito Y, Seki M, Goda H, Shimada Y, Yoshida S, Shinozaki K, Yamaguchi-Shinozaki K (2004) Identification of cold-inducible downstream genes of the Arabidopsis DREB/CBF3 transcriptional factor using two microarray systems. Plant J 38: 982-993.
25. Matsumura H, ITO A, Saitoh H, Winter P, Kahl G, Reuter M, Kruger DH, Terauchi R (2005) SuperSAGE. Cell Microbiol 7: 11-18.
26. Narusaka Y, Nakashima K, Zk S, Sakuma Y, Furihata T, Abe H, Narusaka M, Shinozaki K, Yamaguchi-Shinozaki K (2003) Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses. Plant J 34: 137-148.
27. Narusaka Y, Narusaka M, Seki M (2004) Crosstalk in the responses to abiotic and biotic stresses in Arabidopsis: analysis of gene expression in cytochrome P450 gene superfamily by cDNA microarray. Plant Mol Biol 44: 327-342.
28. Navabpour S, Morris K, Allen R, Harrison E, Mackerness SA-H, Buchanan-Wollaston V (2003) Expression of senescence-enhanced genes in response to oxidative stress. J Exp Bot 54: 2285-2292.
29. Oono Y, Seki M, Nanjo T, Narusaka M, Fugita M, Satoh R, Satou M, Sakurai T, Ishida J, Akiyama K, Iida K, Maruyama K, Satoh S (2003) Monitoring expression profiles of Arabidopsis gene expression during rehydration process after dehydration using ca. 7000 full-length cDNA microarray. Plant J 34: 868-887.
30. O'Toole J, Cruz RT (1983) Genotypic variation in epicuticular wax of rice. Crop Sci 23: 392-394.
31. Ozturk ZN, Talame V, Deyholos M et al (2002) Monitoring large-scale changes in transcript abundance in drought-and salt-stressed barley. Plant Mol Biol 48: 551-573.
32. Oya T, Nepomuceno AL, Neumaier N, Farias JRB, Tobita S, Ito O (2004) Drought tolerance characteristics of Brazilian soybean cultivars-evaluation and characterization of drought tolerance of various Brazilian soybean cultivars in the field. Plant Produc Sci 7: 129-137.
33. Pfaffl MW, Horgan GW, Dempfle L (2002) Relative Expression Software Tool (REST) for group-wise comparison and statistical analysis of relative expression results in Real-Time PCR. Nucleic Acid Res 30: 36.
34. Schenk PM, Kazan K, Manners JM, Anderson JP, Simpson B, Wilson I, Somerville SC, Maclean DJ (2003) Systemic gene expression in Arabidopsis during an incompatible interaction with Alternaria brassicicola. Plant Physiol 132: 999-1010.
35. Seki M, Narusaka M, Ishida J, Nanjo T, Fujita M, Oono Y, Kamiya A, Nakajima M, Enju A, Sakurai T, Satou M, Akiyama K, TAJI T, Yamaguchi-Shinozaki K, Carninci P, Kawai J, Hayashizaki Y, Shinozaki K (2002) Monitoring the expression of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray. Plant J 31: 279-292.
36. Shinozaki K, Yamaguchi-Shinozaki K (2007) Gene networks involved in drought stress response and tolerance. J Exp Bot 58: 221-227.
37. Simpson SD, Nakashima K, Narusaka Y, Seki M, Shinozaki K, Yamaguchi-Shinozaki K (2003) Two different novel cis-acting elements of erd1, aclpA homologous Arabidopsis gene, function in induction by dehydration stress and dark-induced senescence. Plant J 33: 259-270.
38. Slaymaker D, Keen NT (2003) Syringolide elicitor-induced oxidative burst and protein phosphorylation in soybean cells, and tentative identification of two affected phosphoproteins. Plant Sci 166: 387-396.
39. Souza JAM (2006) Perfil transcricional de Bradyrhizobium elkanii semia 587 "in vitro" e em simbiose com soja (Glycine max L. Merrill) através de microarranjo de DNA. Tese (Doutorado). 2006. p 152.
40. Stolf R (2007) Identificação e análise da expressão de genes relacionados com tolerância à seca em soja através de microarranjos de DNA e PCR em tempo real. Universidade Estadual Paulista Júlio de Mesquita Filho, Jaboticabal-SP (Tese de doutorado).
41. Talamè V, Ozturk NZ, Bohnert HJ (2007) Barley transcript profiles under dehydration shock and drought stress treatments: a comparative analysis. J Exp Bot 58: 229-240.
42. Tran L-SP, Nakashima K, Sakuma Y, Osakabe Y, Qin F, Simpson SD, Maruyama K, Fujita Y, Shinozaki K, Yamaguchi-Shinozaki K (2007) Co-expression of the stress-inducible zinc finger homeodomain ZFHD1 and NAC transcription factors enhances expression of the ERD1 gene in Arabidopsis. Plant J 49: 46-63.
43. Tran L-SP, Quach TN, Guttikonda SK, Aldrich DL, Kumar R, Neelakandan A, Valliyodan B, Nguyen HT (2009) Molecular characterization of stress-inducible GmNAC genes in soybean. Mol Gen Genomics 281: 647-664.
44. Tusher V, Tibshirani R, Chu G (2001) Significance analysis of microarrays applied to transcriptional responses to ionizing radiation. Proceed Nat Acad Sci 98: 5116-5121.
45. Umezawa T, Fujita M, Fujita Y, Yamaguchi-Shinozaki K, Shinozaki K (2006) Engineering drought tolerance in plants: discovering and tailoring genes unlock the future. Curr Opin Biotechnol 17: 113-122.
46. Vanderauwera S, De Block M, De Steenne NV, van De Cotte B, Metzlaff M, Breusegem FV (2007) Silencing of poly (ADP-ribose) polymerase in plants alters abiotic stress signal transduction. www. pnas. org/cgi/doi/10. 1073/pnas. 0706668104, 104: 15150-15155.
47. Xiao F, Goodwin SM, Xiao Y et al (2004) Arabidopsis CYP86A2 represses Pseudomonas syringae type III genes and is required for cuticle development. EMBO J 2004: 2903-2913.
48. Yamada K, Lim J, Dale JM, Chen H, Shinn P, Palm CJ, Southwick AM, Wu HC, Kim C, Nguyen M (2003) Empirical analysis of transcriptional activity in the Arabidopsis genome. Sci 302: 842-846.