메뉴 건너뛰기




Volumn 62, Issue 4, 2011, Pages 853-861

Microbial Diversity of an Anoxic Zone of a Hydroelectric Power Station Reservoir in Brazilian Amazonia

Author keywords

[No Author keywords available]

Indexed keywords

ARCHAEAL DNA; BACTERIAL DNA; RNA 16S;

EID: 80255124817     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-011-9906-8     Document Type: Article
Times cited : (19)

References (50)
  • 1
    • 76349125984 scopus 로고    scopus 로고
    • Global ecological patterns in uncultured Archaea
    • Auguet J-C, Barberan A, Casamayor EO (2010) Global ecological patterns in uncultured Archaea. ISME J 4(2): 182-190.
    • (2010) ISME J , vol.4 , Issue.2 , pp. 182-190
    • Auguet, J.-C.1    Barberan, A.2    Casamayor, E.O.3
  • 2
  • 3
    • 0021054930 scopus 로고
    • Interpretations of the sedimentological behaviour of the Tocantins-Araguaia basin
    • IAHS Publication no. 140, R. Keller (Ed.), Hamburg: IAHS
    • Bequio EL, Lou WC, Siciliano MA, Silveira OV (1983) Interpretations of the sedimentological behaviour of the Tocantins-Araguaia basin. Hydrology of humid tropical regions. IAHS, Hamburg, pp 141-151, IAHS Publication no. 140.
    • (1983) Hydrology of Humid Tropical Regions , pp. 141-151
    • Bequio, E.L.1    Lou, W.C.2    Siciliano, M.A.3    Silveira, O.V.4
  • 4
    • 0033944430 scopus 로고    scopus 로고
    • Bioaugmentation of activated sludge by an indigenous 3-chloroaniline-degrading Comamonas testosteroni strain, I2gfp
    • Boon N, Goris J, De Vos P, Verstraete W, Top EM (2000) Bioaugmentation of activated sludge by an indigenous 3-chloroaniline-degrading Comamonas testosteroni strain, I2gfp. Appl Environ Microbiol 66(7): 2906-2913.
    • (2000) Appl Environ Microbiol , vol.66 , Issue.7 , pp. 2906-2913
    • Boon, N.1    Goris, J.2    de Vos, P.3    Verstraete, W.4    Top, E.M.5
  • 5
    • 0030860238 scopus 로고    scopus 로고
    • Molecular microbial diversity in soils from eastern Amazonia: evidence for unusual microorganisms and microbial population shifts associated with deforestation
    • Borneman J, Triplett EW (1997) Molecular microbial diversity in soils from eastern Amazonia: evidence for unusual microorganisms and microbial population shifts associated with deforestation. Appl Environ Microbiol 63: 2647-2653.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 2647-2653
    • Borneman, J.1    Triplett, E.W.2
  • 6
    • 0000518282 scopus 로고    scopus 로고
    • General characteristics of the cyanobacteria
    • 2nd edn., D. R. Boone and R. W. Castenholz (Eds.), New York: Springer
    • Castenholz RW (2001) General characteristics of the cyanobacteria. In: Boone DR, Castenholz RW (eds) Bergey's manual of systematic bacteriology, 2nd edn. Springer, New York, pp 474-487.
    • (2001) Bergey's Manual of Systematic Bacteriology , pp. 474-487
    • Castenholz, R.W.1
  • 7
    • 77957888370 scopus 로고
    • Stopping rules and estimation for recapture debugging with unequal failure rates
    • Chao A, Yang MCK (1993) Stopping rules and estimation for recapture debugging with unequal failure rates. Biometrika 80: 193-201.
    • (1993) Biometrika , vol.80 , pp. 193-201
    • Chao, A.1    Yang, M.C.K.2
  • 10
    • 69949095008 scopus 로고    scopus 로고
    • Dynamics of the SAR11 bacterioplankton lineage in relation to environmental conditions in the oligotrophic North Pacific subtropical gyre
    • Eiler A, Hayakawa DH, Church MJ, Karl DM, Rappé MS (2009) Dynamics of the SAR11 bacterioplankton lineage in relation to environmental conditions in the oligotrophic North Pacific subtropical gyre. Environ Microbiol 11(9): 2291-2300.
    • (2009) Environ Microbiol , vol.11 , Issue.9 , pp. 2291-2300
    • Eiler, A.1    Hayakawa, D.H.2    Church, M.J.3    Karl, D.M.4    Rappé, M.S.5
  • 11
    • 8444239817 scopus 로고    scopus 로고
    • Survey of archaeal diversity reveals an abundance of halophilic Archaea in a low-salt, sulfide- and sulfur-rich spring
    • Elshahed MS, Najar FZ, Roe BA, Oren A, Dewers TA, Krumholz LR (2004) Survey of archaeal diversity reveals an abundance of halophilic Archaea in a low-salt, sulfide- and sulfur-rich spring. App Environ Microb 70(4): 2230-2239.
    • (2004) App Environ Microb , vol.70 , Issue.4 , pp. 2230-2239
    • Elshahed, M.S.1    Najar, F.Z.2    Roe, B.A.3    Oren, A.4    Dewers, T.A.5    Krumholz, L.R.6
  • 13
    • 0036161362 scopus 로고    scopus 로고
    • Greenhouse gas emissions from hydroelectric reservoir (Brazil's Tucuruí dam) and the energy policy implications
    • Fearnside PM (2002) Greenhouse gas emissions from hydroelectric reservoir (Brazil's Tucuruí dam) and the energy policy implications. Water Air Soil Pollut 133: 69-96.
    • (2002) Water Air Soil Pollut , vol.133 , pp. 69-96
    • Fearnside, P.M.1
  • 14
    • 5444261370 scopus 로고    scopus 로고
    • Greenhouse gas emissions from hydroelectric dams: controversies provide a springboard for rethinking a supposedly 'clean' energy source. An editorial comment
    • Fearnside PM (2004) Greenhouse gas emissions from hydroelectric dams: controversies provide a springboard for rethinking a supposedly 'clean' energy source. An editorial comment. Clim Chang 66: 1-8.
    • (2004) Clim Chang , vol.66 , pp. 1-8
    • Fearnside, P.M.1
  • 16
    • 0037335946 scopus 로고    scopus 로고
    • Community structure of ammonia-oxidizing bacteria within anoxic marine sediments
    • Freitag TE, Prosser JI (2003) Community structure of ammonia-oxidizing bacteria within anoxic marine sediments. Appl Environ Microbiol 69: 1359-1371.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 1359-1371
    • Freitag, T.E.1    Prosser, J.I.2
  • 17
    • 0033867966 scopus 로고    scopus 로고
    • Taxonomic, phylogenetic and ecological diversity of methanogenic archaea
    • Garcia J, Patel BK, Ollivier B (2000) Taxonomic, phylogenetic and ecological diversity of methanogenic archaea. Anaerobe 6: 205-226.
    • (2000) Anaerobe , vol.6 , pp. 205-226
    • Garcia, J.1    Patel, B.K.2    Ollivier, B.3
  • 18
    • 0000803388 scopus 로고
    • The population frequencies of species and the estimation of population parameters
    • Good IJ (1953) The population frequencies of species and the estimation of population parameters. Biometrika 40: 237-264.
    • (1953) Biometrika , vol.40 , pp. 237-264
    • Good, I.J.1
  • 19
    • 78650568861 scopus 로고    scopus 로고
    • Composition of bacterial and archaeal communities in freshwater sediments with different contamination levels (Lake Geneva, Switzerland)
    • Haller L, Tonolla M, Zopfi J, Peduzzi R, Wildi W, Poté J (2011) Composition of bacterial and archaeal communities in freshwater sediments with different contamination levels (Lake Geneva, Switzerland). Water Res 45(3): 1213-1228.
    • (2011) Water Res , vol.45 , Issue.3 , pp. 1213-1228
    • Haller, L.1    Tonolla, M.2    Zopfi, J.3    Peduzzi, R.4    Wildi, W.5    Poté, J.6
  • 20
    • 10344227692 scopus 로고    scopus 로고
    • Metagenomics: application of genomics to uncultured microorganisms
    • Handelsman J (2004) Metagenomics: application of genomics to uncultured microorganisms. Microbiol Mol Biol Rev 68(4): 669-685.
    • (2004) Microbiol Mol Biol Rev , vol.68 , Issue.4 , pp. 669-685
    • Handelsman, J.1
  • 21
    • 0041810237 scopus 로고    scopus 로고
    • Caldisphaera lagunensis gen. nov., sp. nov., a novel thermoacidophilic crenarchaeote isolated from a hot spring at Mt Maquiling, Philippines
    • Itoh T, Suzuki K, Sanchez PC, Nakase T (2003) Caldisphaera lagunensis gen. nov., sp. nov., a novel thermoacidophilic crenarchaeote isolated from a hot spring at Mt Maquiling, Philippines. Int J Syst Evol Microbiol 53: 1149-1154.
    • (2003) Int J Syst Evol Microbiol , vol.53 , pp. 1149-1154
    • Itoh, T.1    Suzuki, K.2    Sanchez, P.C.3    Nakase, T.4
  • 22
    • 0842324405 scopus 로고    scopus 로고
    • Bacterial diversity in aquatic and other environments: what 16S rDNA libraries can tell us
    • Kemp PF, Aller JY (2004) Bacterial diversity in aquatic and other environments: what 16S rDNA libraries can tell us. FEMS Microbiol Ecol 47: 161-177.
    • (2004) FEMS Microbiol Ecol , vol.47 , pp. 161-177
    • Kemp, P.F.1    Aller, J.Y.2
  • 23
    • 30544452959 scopus 로고    scopus 로고
    • Methane emissions from terrestrial plants under aerobic conditions
    • Keppler F, Hamilton JTG, Braß M, Rockmann T (2006) Methane emissions from terrestrial plants under aerobic conditions. Nature 439: 187-191.
    • (2006) Nature , vol.439 , pp. 187-191
    • Keppler, F.1    Hamilton, J.T.G.2    Braß, M.3    Rockmann, T.4
  • 24
    • 0038221311 scopus 로고    scopus 로고
    • Quantitative detection of methanotrophs in soil by novel pmoA-targeted real-time PCR assays
    • Kolb S, Knief C, Stubner S, Conrad R (2003) Quantitative detection of methanotrophs in soil by novel pmoA-targeted real-time PCR assays. Appl Environ Microbiol 69: 2423-2429.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 2423-2429
    • Kolb, S.1    Knief, C.2    Stubner, S.3    Conrad, R.4
  • 25
    • 77956421530 scopus 로고    scopus 로고
    • Archaeal and bacterial community structures in the anoxic sediment of Antarctic meromictic lake Nurume-Ike
    • Kurosawa N, Sato S, Kawarabayasi Y, Imura S, Naganuma T (2010) Archaeal and bacterial community structures in the anoxic sediment of Antarctic meromictic lake Nurume-Ike. Polar Sci 4: 421-429.
    • (2010) Polar Sci , vol.4 , pp. 421-429
    • Kurosawa, N.1    Sato, S.2    Kawarabayasi, Y.3    Imura, S.4    Naganuma, T.5
  • 26
    • 33947386687 scopus 로고    scopus 로고
    • Phylogenetic diversity of archaea and bacteria in the anoxic zone of a meromictic lake (Lake Pavin, France)
    • Lehours AC, Evans P, Bardot C, Joblin K, Gerard F (2007) Phylogenetic diversity of archaea and bacteria in the anoxic zone of a meromictic lake (Lake Pavin, France). Appl Environ Microbiol 73: 2016-2019.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 2016-2019
    • Lehours, A.C.1    Evans, P.2    Bardot, C.3    Joblin, K.4    Gerard, F.5
  • 27
    • 19344367947 scopus 로고    scopus 로고
    • Biogeochemical distinction of methane releases from two Amazon hydroreservoirs
    • Lima IBT (2005) Biogeochemical distinction of methane releases from two Amazon hydroreservoirs. Chemosphere 59: 1697-1702.
    • (2005) Chemosphere , vol.59 , pp. 1697-1702
    • Lima, I.B.T.1
  • 28
    • 34547433545 scopus 로고    scopus 로고
    • Global patterns in bacterial diversity
    • Lozupone CA, Knight R (2007) Global patterns in bacterial diversity. Proc Natl Acad Sci 104: 11436-11440.
    • (2007) Proc Natl Acad Sci , vol.104 , pp. 11436-11440
    • Lozupone, C.A.1    Knight, R.2
  • 29
    • 0035318078 scopus 로고    scopus 로고
    • Phylogenetic diversity of bacterial and archaeal communities in the anoxic zone of the Cariaco Basin
    • Madrid VM, Taylor GT, Scranton MI, Chistoserdov AY (2001) Phylogenetic diversity of bacterial and archaeal communities in the anoxic zone of the Cariaco Basin. Appl Environ Microbiol 67: 1663-1674.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 1663-1674
    • Madrid, V.M.1    Taylor, G.T.2    Scranton, M.I.3    Chistoserdov, A.Y.4
  • 31
    • 84855642130 scopus 로고    scopus 로고
    • Ministério do Meio Ambiente, Secretaria de Recursos Hídricos-Brasília: MMA
    • Ministério do Meio Ambiente (2006) Caderno da Regiéão Hidrográfica do Tocantins-Araguaia. Secretaria de Recursos Hídricos-Brasília: MMA.
    • (2006) Caderno Da Regiéão Hidrográfica Do Tocantins-Araguaia
  • 32
    • 59249108822 scopus 로고    scopus 로고
    • Temporal and spatial variability in nearshore bacterioplankton communities of Lake Michigan
    • Mueller-Spitz SR, Goetz GW, McLellan SL (2009) Temporal and spatial variability in nearshore bacterioplankton communities of Lake Michigan. FEMS Microbiol Ecol 67: 511-522.
    • (2009) FEMS Microbiol Ecol , vol.67 , pp. 511-522
    • Mueller-Spitz, S.R.1    Goetz, G.W.2    McLellan, S.L.3
  • 33
    • 37549027613 scopus 로고    scopus 로고
    • SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
    • Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, Peplies J, Glockner FO (2007) SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucl Acids Res 35: 7188-7196.
    • (2007) Nucl Acids Res , vol.35 , pp. 7188-7196
    • Pruesse, E.1    Quast, C.2    Knittel, K.3    Fuchs, B.M.4    Ludwig, W.5    Peplies, J.6    Glockner, F.O.7
  • 34
    • 53749100319 scopus 로고    scopus 로고
    • Sediminibacterium salmoneum gen. nov., sp. nov., a member of the phylum Bacteroidetes isolated from sediment of a eutrophic reservoir
    • Qu J-H, Yuan H-L (2008) Sediminibacterium salmoneum gen. nov., sp. nov., a member of the phylum Bacteroidetes isolated from sediment of a eutrophic reservoir. Int J Syst Evol Microbiol 58: 2191-2194.
    • (2008) Int J Syst Evol Microbiol , vol.58 , pp. 2191-2194
    • Qu, J.-H.1    Yuan, H.-L.2
  • 35
    • 59649096533 scopus 로고    scopus 로고
    • Methane stocks in tropical hydropower reservoirs as a potential energy source
    • Ramos F, Bambace L, Lima I, Rosa R, Mazzi E, Fearnside P (2009) Methane stocks in tropical hydropower reservoirs as a potential energy source. Clim Chang 93: 1-13.
    • (2009) Clim Chang , vol.93 , pp. 1-13
    • Ramos, F.1    Bambace, L.2    Lima, I.3    Rosa, R.4    Mazzi, E.5    Fearnside, P.6
  • 36
    • 0003252192 scopus 로고    scopus 로고
    • Plasmids and their usefulness in molecular cloning
    • 3rd edn, CSHL Press, Cold Spring Harbor, New York
    • Sambrook J, Russel DW (2001) Plasmids and their usefulness in molecular cloning, 3rd edn. In: Molecular cloning: a laboratory manual, vol. 1. CSHL Press, Cold Spring Harbor, New York, pp 1. 32-1. 34.
    • (2001) Molecular Cloning: A Laboratory Manual , vol.1 , pp. 32-34
    • Sambrook, J.1    Russel, D.W.2
  • 37
    • 38149133071 scopus 로고    scopus 로고
    • Identification of novel perchloroethene-respiring microorganisms in anoxic river sediment by RNA-based stable isotope probing
    • Sandra K, Michael WF (2008) Identification of novel perchloroethene-respiring microorganisms in anoxic river sediment by RNA-based stable isotope probing. Environ Microbiol 10: 31-46.
    • (2008) Environ Microbiol , vol.10 , pp. 31-46
    • Sandra, K.1    Michael, W.F.2
  • 38
    • 19944426081 scopus 로고    scopus 로고
    • Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes
    • Seshadri R, Adrian L, Fouts DE, Eisen JA, Phillippy AM, Methe BA et al (2005) Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes. Science 307(5706): 105-108.
    • (2005) Science , vol.307 , Issue.5706 , pp. 105-108
    • Seshadri, R.1    Adrian, L.2    Fouts, D.E.3    Eisen, J.A.4    Phillippy, A.M.5    Methe, B.A.6
  • 39
    • 0031033384 scopus 로고    scopus 로고
    • Recovery of crenarchaeotal ribosomal DNA sequences from freshwater-lake sediments
    • Schleper C, Holben W, Klenk H-P (1997) Recovery of crenarchaeotal ribosomal DNA sequences from freshwater-lake sediments. Appl Environ Microbiol 63(1): 321-323.
    • (1997) Appl Environ Microbiol , vol.63 , Issue.1 , pp. 321-323
    • Schleper, C.1    Holben, W.2    Klenk, H.-P.3
  • 42
    • 0032900365 scopus 로고    scopus 로고
    • Selective isolation and distribution of sporichthya strains in soil
    • Suzuki S, Okuda T, Komatsubara S (1999) Selective isolation and distribution of sporichthya strains in soil. Appl Environ Microbiol 65(5): 1930-1935.
    • (1999) Appl Environ Microbiol , vol.65 , Issue.5 , pp. 1930-1935
    • Suzuki, S.1    Okuda, T.2    Komatsubara, S.3
  • 43
    • 17444372781 scopus 로고    scopus 로고
    • Comparative analysis of bacterial diversity in freshwater sediment of a shallow eutrophic lake by molecular and improved cultivation-based techniques
    • Tamaki H, Sekiguchi Y, Hanada S, Nakamura K, Nomura N, Matsumura M, Kamagata Y (2005) Comparative analysis of bacterial diversity in freshwater sediment of a shallow eutrophic lake by molecular and improved cultivation-based techniques. Appl Environ Microbiol 71: 2162-2169.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 2162-2169
    • Tamaki, H.1    Sekiguchi, Y.2    Hanada, S.3    Nakamura, K.4    Nomura, N.5    Matsumura, M.6    Kamagata, Y.7
  • 45
    • 0242489257 scopus 로고    scopus 로고
    • Fingerprinting microbial assemblages from the oxic/anoxic chemocline of the Black Sea
    • Vetriani C, Tran HV, Kerkhof LJ (2003) Fingerprinting microbial assemblages from the oxic/anoxic chemocline of the Black Sea. Appl Environ Microbiol 69: 6481-6488.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 6481-6488
    • Vetriani, C.1    Tran, H.V.2    Kerkhof, L.J.3
  • 46
    • 79960099987 scopus 로고    scopus 로고
    • Methyloferula stellata gen. nov., sp. nov., an acidophilic, obligately methanotrophic bacterium possessing only a soluble methane monooxygenase
    • doi: 10. 1099/ijs. 0. 028118-0
    • Vorobev AV, Baani M, Doronina NV, Brady AL, Liesack W, Dunfield PF, Dedysh SN (2011) Methyloferula stellata gen. nov., sp. nov., an acidophilic, obligately methanotrophic bacterium possessing only a soluble methane monooxygenase. Int J Syst Evol Microbiol. doi: 10. 1099/ijs. 0. 028118-0.
    • (2011) Int J Syst Evol Microbiol
    • Vorobev, A.V.1    Baani, M.2    Doronina, N.V.3    Brady, A.L.4    Liesack, W.5    Dunfield, P.F.6    Dedysh, S.N.7
  • 47
    • 35148814913 scopus 로고    scopus 로고
    • The methanogenic bacteria
    • 3rd edn., M. Dworkin, S. Falkow, E. Rosenberg, K. H. Schleifer, and E. Stackebrandt (Eds.), New York: Springer
    • Whitman W, Bowen T, Boone D (2006) The methanogenic bacteria. In: Dworkin M, Falkow S, Rosenberg E, Schleifer KH, Stackebrandt E (eds) The prokaryotes, vol 3, 3rd edn. Springer, New York, pp 165-207.
    • (2006) The Prokaryotes, Vol 3 , pp. 165-207
    • Whitman, W.1    Bowen, T.2    Boone, D.3
  • 48
    • 76649129853 scopus 로고    scopus 로고
    • Isolation of the exoelectrogenic denitrifying bacterium Comamonas denitrificans based on dilution to extinction
    • Xing D, Cheng S, Logan BE, Regan JM (2010) Isolation of the exoelectrogenic denitrifying bacterium Comamonas denitrificans based on dilution to extinction. Appl Microbiol Biotechnol 85(5): 1575-1587.
    • (2010) Appl Microbiol Biotechnol , vol.85 , Issue.5 , pp. 1575-1587
    • Xing, D.1    Cheng, S.2    Logan, B.E.3    Regan, J.M.4
  • 49
    • 33745320006 scopus 로고    scopus 로고
    • Anaerolinea thermolimosa sp. nov., Levilinea saccharolytica gen. nov., sp. nov. and Leptolinea tardivitalis gen. nov., sp. nov., novel filamentous anaerobes, and description of the new classes Anaerolineae classis nov. and Caldilineae classis nov. in the bacterial phylum Chloroflexi
    • Yamada T, Sekiguchi Y, Hanada S, Imachi H, Ohashi A, Harada H et al (2006) Anaerolinea thermolimosa sp. nov., Levilinea saccharolytica gen. nov., sp. nov. and Leptolinea tardivitalis gen. nov., sp. nov., novel filamentous anaerobes, and description of the new classes Anaerolineae classis nov. and Caldilineae classis nov. in the bacterial phylum Chloroflexi. Int J Syst Evol Microbiol 56: 1331-1340.
    • (2006) Int J Syst Evol Microbiol , vol.56 , pp. 1331-1340
    • Yamada, T.1    Sekiguchi, Y.2    Hanada, S.3    Imachi, H.4    Ohashi, A.5    Harada, H.6
  • 50
    • 34848927281 scopus 로고    scopus 로고
    • Cerasicoccus arenae gen. nov., sp. nov., a carotenoid-producing marine representative of the family Puniceicoccaceae within the phylum "Verrucomicrobia", isolated from marine sand
    • Yoon J, Matsuo Y, Matsuda S, Adachi K, Kasai H, Yokota A (2007) Cerasicoccus arenae gen. nov., sp. nov., a carotenoid-producing marine representative of the family Puniceicoccaceae within the phylum "Verrucomicrobia", isolated from marine sand. Int J Syst Evol Microbiol 57: 2067-2072.
    • (2007) Int J Syst Evol Microbiol , vol.57 , pp. 2067-2072
    • Yoon, J.1    Matsuo, Y.2    Matsuda, S.3    Adachi, K.4    Kasai, H.5    Yokota, A.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.