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Volumn 69, Issue 11, 2003, Pages 6481-6488

Fingerprinting Microbial Assemblages from the Oxic/Anoxic Chemocline of the Black Sea

Author keywords

[No Author keywords available]

Indexed keywords

POLYMORPHISM;

EID: 0242489257     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.69.11.6481-6488.2003     Document Type: Article
Times cited : (146)

References (44)
  • 1
    • 0027995162 scopus 로고
    • A molecular technique for identification of bacteria using small subunit ribosomal RNA sequences
    • Avaniss-Aghajani, E., K. Jones, D. Chapman, and C. Brunk. 1994. A molecular technique for identification of bacteria using small subunit ribosomal RNA sequences. BioTechniques 17:144-146.
    • (1994) BioTechniques , vol.17 , pp. 144-146
    • Avaniss-Aghajani, E.1    Jones, K.2    Chapman, D.3    Brunk, C.4
  • 3
    • 0026312538 scopus 로고
    • Chemical variability in the Black Sea: Implications of continuous vertical profiles that penetrated the oxic/anoxic interface
    • Codispoti, L. A., G. E. Friederich, J. W. Murray, and C. M. Sakamoto. 1991. Chemical variability in the Black Sea: implications of continuous vertical profiles that penetrated the oxic/anoxic interface. Deep Sea Res. 38(Suppl. 2):S691-S710.
    • (1991) Deep Sea Res. , vol.38 , Issue.SUPPL. 2
    • Codispoti, L.A.1    Friederich, G.E.2    Murray, J.W.3    Sakamoto, C.M.4
  • 4
    • 0034469143 scopus 로고    scopus 로고
    • Community composition of marine bacterioplankton determined by 16S rRNA gene clone libraries and fluorescence in situ hybridization
    • Cottrell, M. T., and D. L. Kirchman. 2000. Community composition of marine bacterioplankton determined by 16S rRNA gene clone libraries and fluorescence in situ hybridization. Appl. Environ. Microbiol. 66:5116-5122.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 5116-5122
    • Cottrell, M.T.1    Kirchman, D.L.2
  • 5
    • 0026755238 scopus 로고
    • Archaea in coastal marine environments
    • DeLong, E. F. 1992. Archaea in coastal marine environments. Proc. Natl. Acad. Sci. USA 89:5685-5689.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 5685-5689
    • DeLong, E.F.1
  • 6
    • 0001468642 scopus 로고
    • A least squares algorithm for fitting additive trees to proximity data
    • DeSoete, G. 1983. A least squares algorithm for fitting additive trees to proximity data. Psychometrica 48:621-626.
    • (1983) Psychometrica , vol.48 , pp. 621-626
    • DeSoete, G.1
  • 7
    • 0032189023 scopus 로고    scopus 로고
    • Microbial diversity in a hydrocarbon- and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation
    • Dojka, M. A., P. Hugenholtz, S. K. Haack, and N. R. Pace. 1998. Microbial diversity in a hydrocarbon- and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation. Appl. Environ. Microbiol. 64:3869-3877.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 3869-3877
    • Dojka, M.A.1    Hugenholtz, P.2    Haack, S.K.3    Pace, N.R.4
  • 8
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 19:783-791.
    • (1985) Evolution , vol.19 , pp. 783-791
    • Felsenstein, J.1
  • 9
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • Felsenstein, J. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17:368-376.
    • (1981) J. Mol. Evol. , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 10
    • 0026525546 scopus 로고
    • Novel major archaebacterial group from marine plankton
    • Fuhrman, J. A., K. McCallum, and A. A. Davis. 1992. Novel major archaebacterial group from marine plankton. Nature 356:148-149.
    • (1992) Nature , vol.356 , pp. 148-149
    • Fuhrman, J.A.1    McCallum, K.2    Davis, A.A.3
  • 11
    • 0029667158 scopus 로고    scopus 로고
    • Detection of stratified microbial populations related to Chlorobium and Fibrobacter species in the Atlantic and Pacific Oceans
    • Gordon, D. A., and S. J. Giovannoni. 1996. Detection of stratified microbial populations related to Chlorobium and Fibrobacter species in the Atlantic and Pacific Oceans. Appl. Environ. Microbiol. 62:1171-1177.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 1171-1177
    • Gordon, D.A.1    Giovannoni, S.J.2
  • 14
    • 0026268457 scopus 로고
    • Microbial processes in the Black Sea water column and top sediment: An overview
    • E. Izdar and J. W. Murray (ed.). Kluwer Academic Publishers, Dordrecht, The Netherlands
    • Jannasch, H. W. 1991. Microbial processes in the Black Sea water column and top sediment: an overview, p. 271-286. In E. Izdar and J. W. Murray (ed.), Black Sea oceanography. Kluwer Academic Publishers, Dordrecht, The Netherlands.
    • (1991) Black Sea Oceanography , pp. 271-286
    • Jannasch, H.W.1
  • 15
    • 0000336712 scopus 로고
    • Chemolithotrophic sulfur-oxiding bacteria from the Black Sea
    • Jannasch, H. W., C. O. Wirsen, and S. J. Molyneaux. 1991. Chemolithotrophic sulfur-oxiding bacteria from the Black Sea. Deep-Sea Res. 38:S1105-S1120.
    • (1991) Deep-Sea Res. , vol.38
    • Jannasch, H.W.1    Wirsen, C.O.2    Molyneaux, S.J.3
  • 18
    • 0032855859 scopus 로고    scopus 로고
    • Small ribosomal RNA content in marine Proteobacteria during non-steady state growth
    • Kerkhof, L. J., and P. F. Kemp. 1999. Small ribosomal RNA content in marine Proteobacteria during non-steady state growth. FEMS Microb. Ecol. 30:253-260.
    • (1999) FEMS Microb. Ecol. , vol.30 , pp. 253-260
    • Kerkhof, L.J.1    Kemp, P.F.2
  • 19
    • 0024307824 scopus 로고
    • Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea
    • Kishino, H., and M. Hasegawa. 1989. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea. J. Mol. Evol. 29:170-179.
    • (1989) J. Mol. Evol. , vol.29 , pp. 170-179
    • Kishino, H.1    Hasegawa, M.2
  • 20
    • 0035040382 scopus 로고    scopus 로고
    • Terminal restriction fragment patterns: A tool for comparing microbial communities and assessing community dynamics
    • Kitts, C. L. 2001. Terminal restriction fragment patterns: a tool for comparing microbial communities and assessing community dynamics. Curr. Issues Intest. Microbiol. 2:17-25.
    • (2001) Curr. Issues Intest. Microbiol. , vol.2 , pp. 17-25
    • Kitts, C.L.1
  • 23
    • 0035318078 scopus 로고    scopus 로고
    • Phylogenetic diversity of bacterial and archaeal communities in the anoxic zone of the Cariaco Basin
    • Madrid, V. M., G. T. Taylor, M. I. Scranton, and A. Y. Chistoserdov. 2001. Phylogenetic diversity of bacterial and archaeal communities in the anoxic zone of the Cariaco Basin. Appl. Environ. Microbiol. 67:1663-1674.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 1663-1674
    • Madrid, V.M.1    Taylor, G.T.2    Scranton, M.I.3    Chistoserdov, A.Y.4
  • 24
    • 0028976424 scopus 로고
    • Phylogenetic diversity of the bacterial community from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii
    • Moyer, C. L., F. C. Dobbs, and D. M. Karl. 1995. Phylogenetic diversity of the bacterial community from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii. Appl. Environ. Microbiol. 61:1555-1562.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 1555-1562
    • Moyer, C.L.1    Dobbs, F.C.2    Karl, D.M.3
  • 25
    • 0030831861 scopus 로고    scopus 로고
    • Phylogenetic diversity of archaea in sediment samples from a coastal salt marsh
    • Munson, M. A., D. B. Nedwell, and T. M. Embley. 1997. Phylogenetic diversity of archaea in sediment samples from a coastal salt marsh. Appl. Environ. Microbiol. 63:4729-4733.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 4729-4733
    • Munson, M.A.1    Nedwell, D.B.2    Embley, T.M.3
  • 29
    • 0031732243 scopus 로고    scopus 로고
    • Molecular characterization of a sulfate-reducing consortium which mineralizes benzene
    • Phelps, C. D., L. J. Kerkhof, and L. Y. Young. 1998. Molecular characterization of a sulfate-reducing consortium which mineralizes benzene. FEMS Microbiol. Ecol. 27:269-279.
    • (1998) FEMS Microbiol. Ecol. , vol.27 , pp. 269-279
    • Phelps, C.D.1    Kerkhof, L.J.2    Young, L.Y.3
  • 32
    • 0033823565 scopus 로고    scopus 로고
    • Novel bacterial and archaeal lineages from an in situ growth chamber deployed at a Mid-Atlantic Ridge hydrothermal vent
    • Reysenbach, A. L., K. Longnecker, and J. Kirshtein. 2000. Novel bacterial and archaeal lineages from an in situ growth chamber deployed at a Mid-Atlantic Ridge hydrothermal vent. Appl. Environ. Microbiol. 66:3798-3806.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 3798-3806
    • Reysenbach, A.L.1    Longnecker, K.2    Kirshtein, J.3
  • 33
    • 0024838268 scopus 로고
    • Anaerobic degradation of aniline and dihydroxybenzenes by newly isolated sulfate-reducing bacteria and description of Desulfobacterium anilini
    • Schnell, S., F. Bak, and N. Pfennig. 1989. Anaerobic degradation of aniline and dihydroxybenzenes by newly isolated sulfate-reducing bacteria and description of Desulfobacterium anilini. Arch. Microbiol. 152:556-563.
    • (1989) Arch. Microbiol. , vol.152 , pp. 556-563
    • Schnell, S.1    Bak, F.2    Pfennig, N.3
  • 34
    • 0034768573 scopus 로고    scopus 로고
    • Evidence for anaerobic methane oxidation by archaea in euxinic waters of the Black Sea
    • Schouten, S., S. G. Wakeham, and J. S. S. Damste. 2001. Evidence for anaerobic methane oxidation by archaea in euxinic waters of the Black Sea. Org. Geochem. 32:1277-1281.
    • (2001) Org. Geochem. , vol.32 , pp. 1277-1281
    • Schouten, S.1    Wakeham, S.G.2    Damste, J.S.S.3
  • 36
    • 0033933788 scopus 로고    scopus 로고
    • Microbial manganese and sulfate reduction in Black Sea shelf sediments
    • Thamdrup, B., R. Rossello-Mora, and R. Amann. 2000. Microbial manganese and sulfate reduction in Black Sea shelf sediments. Appl. Environ. Microbiol. 66:2888-2897.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 2888-2897
    • Thamdrup, B.1    Rossello-Mora, R.2    Amann, R.3
  • 37
    • 0035136402 scopus 로고    scopus 로고
    • Molecular signals for anaerobic methane oxidation in Black Sea seep carbonates and a microbial mat
    • Thiel, V., J. Peckmann, H. H. Richnow, U. Luth, J. Reitner, and W. Michaelis. 2001. Molecular signals for anaerobic methane oxidation in Black Sea seep carbonates and a microbial mat. Mar. Chem. 73:97-112.
    • (2001) Mar. Chem. , vol.73 , pp. 97-112
    • Thiel, V.1    Peckmann, J.2    Richnow, H.H.3    Luth, U.4    Reitner, J.5    Michaelis, W.6
  • 38
    • 0035316138 scopus 로고    scopus 로고
    • Biogeochemical and molecular signatures of anaerobic methane oxidation in a marine sediment
    • Thomsen, T. R., K. Finster, and N. B. Ramsing. 2001. Biogeochemical and molecular signatures of anaerobic methane oxidation in a marine sediment. Appl. Environ. Microbiol. 67:1646-1656.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 1646-1656
    • Thomsen, T.R.1    Finster, K.2    Ramsing, N.B.3
  • 39
    • 49549142424 scopus 로고
    • A new type of thiosulfate oxidizing, nitrate reducing microorganism: Thiomicrospira denitrificans sp. nov.
    • Timmer-ten Hoor, A. 1975. A new type of thiosulfate oxidizing, nitrate reducing microorganism: Thiomicrospira denitrificans sp. nov. Neth. J. Sea Res. 9:344-350.
    • (1975) Neth. J. Sea Res. , vol.9 , pp. 344-350
    • Timmer-ten Hoor, A.1
  • 40
    • 0032696569 scopus 로고    scopus 로고
    • Microbial diversity in marine sediments from Sagami Bay and Tokyo Bay, Japan, as determined by 16S rRNA gene analysis
    • Urakawa, H., K. Kita-Tsukamoto, and K. Ohwada. 1999. Microbial diversity in marine sediments from Sagami Bay and Tokyo Bay, Japan, as determined by 16S rRNA gene analysis. Microbiology 145:3305-3315.
    • (1999) Microbiology , vol.145 , pp. 3305-3315
    • Urakawa, H.1    Kita-Tsukamoto, K.2    Ohwada, K.3
  • 41
    • 0034993323 scopus 로고    scopus 로고
    • Taxonomic characterization of Ketogulonigenium vulgare gen. nov., sp. nov. and Ketogulonigenium robustum sp. nov., which oxidize L-sorbose to 2-keto-L-gulonic acid
    • Urbance, J. W., B. J. Bratina, S. F. Stoddard, and T. M. Schmidt. 2001. Taxonomic characterization of Ketogulonigenium vulgare gen. nov., sp. nov. and Ketogulonigenium robustum sp. nov., which oxidize L-sorbose to 2-keto-L-gulonic acid. Int. J. Syst. Evol. Microbiol. 51:1059-1070.
    • (2001) Int. J. Syst. Evol. Microbiol. , vol.51 , pp. 1059-1070
    • Urbance, J.W.1    Bratina, B.J.2    Stoddard, S.F.3    Schmidt, T.M.4
  • 42
    • 0032868072 scopus 로고    scopus 로고
    • Population structure and phylogenetic characterization of marine benthic archaea in deep-sea sediments
    • Vetriani, C., H. W. Jannasch, B. J. MacGregor, D. A. Stahl, and A. L. Reysenbach. 1999. Population structure and phylogenetic characterization of marine benthic archaea in deep-sea sediments. Appl. Environ. Microbiol. 65:4375-4384.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 4375-4384
    • Vetriani, C.1    Jannasch, H.W.2    MacGregor, B.J.3    Stahl, D.A.4    Reysenbach, A.L.5
  • 43
    • 0032960491 scopus 로고    scopus 로고
    • Phylogenetic analysis of an anaerobic, trichlorobenzene-transforming microbial consortium
    • von Wintzingerode, F., B. Selent, W. Hegemann, and U. B. Gobel. 1999. Phylogenetic analysis of an anaerobic, trichlorobenzene-transforming microbial consortium. Appi. Environ. Microbiol. 65:283-286.
    • (1999) Appi. Environ. Microbiol. , vol.65 , pp. 283-286
    • Von Wintzingerode, F.1    Selent, B.2    Hegemann, W.3    Gobel, U.B.4
  • 44
    • 0022650756 scopus 로고
    • A small-scale five-hour procedure for isolating multiple samples of CsCl-purified DNA: Application to isolations from mammalian, insect, higher plant, algal, yeast, and bacterial sources
    • Weeks, D. P., N. Beerman, and O. M. Griffith. 1986. A small-scale five-hour procedure for isolating multiple samples of CsCl-purified DNA: application to isolations from mammalian, insect, higher plant, algal, yeast, and bacterial sources. Anal. Biochem. 152:376-385.
    • (1986) Anal. Biochem. , vol.152 , pp. 376-385
    • Weeks, D.P.1    Beerman, N.2    Griffith, O.M.3


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