Recent avian influenza virus A/H5N1 evolution in vaccinated and unvaccinated poultry from farms in Southern Vietnam, January-March 2010

Transboundary and Emerging Diseases

Volumn 58, Issue 6, 2011, Pages 537-543

  Long, N T ^a   Thanh, T T ^b   van Doorn, H R ^b,c,d   Vu, P P ^a   Dung, P T ^a   Dung, T T K ^e   Tien, T N ^e   Thao, D T T ^e   Hung, P ^f   Quang, N V ^f   Hoa, N T ^b,c   Bryant, J E ^b,c   Boni, M F ^b,c,g  

^a Regional Animal Health Office No 6   (Viet Nam)

^b OXFORD UNIVERSITY CLINICAL RESEARCH UNIT   (Viet Nam)

^c UNIVERSITY OF OXFORD   (United Kingdom)

^d Southeast Asian Infectious Diseases Clinical Research Network   (Indonesia)

^e Regional Animal Health Office No 7   (Viet Nam)

^f Central Vietnam Veterinary Institute   (Viet Nam)

^g UNIVERSITY OF OXFORD   (United Kingdom)

Author keywords

Emerging diseases; Vaccine; Veterinary epidemiology; Virus; Zoonosis zoonotics

Indexed keywords

INFLUENZA VACCINE;

AGRICULTURE; ANIMAL; ARTICLE; AVIAN INFLUENZA; CHICKEN; DUCK; GENETICS; IMMUNOLOGY; INFLUENZA VIRUS A H5N1; MOLECULAR EVOLUTION; PHYLOGENY; VIET NAM; VIROLOGY;

AGRICULTURE; ANIMALS; CHICKENS; DUCKS; EVOLUTION, MOLECULAR; INFLUENZA A VIRUS, H5N1 SUBTYPE; INFLUENZA IN BIRDS; INFLUENZA VACCINES; PHYLOGENY; VIETNAM;

AVIAN INFLUENZA VIRUS;

EID: 80255123833     PISSN: 18651674     EISSN: 18651682     Source Type: Journal    
DOI: 10.1111/j.1865-1682.2011.01229.x     Document Type: Article

References (26)

1. Boni, M.F., M.D. de Jong, H.R. van Doorn, and E.C. Holmes, 2010: Guidelines for identifying homologous recombination events in influenza A virus. PLoS ONE 5, e10434.
2. Chen, H., 2009: Avian influenza vaccination: the experience in China. Rev. Sci. Tech. Off. Int. Epiz. 28, 267-274.
3. Domenech, J., G. Dauphin, J. Rushton, J. McGrane, J. Lubroth, A. Tripodi, J. Gilbert, and L. D. Sims, 2009: Experiences with vaccination in countries endemically infected with highly pathogenic avian influenza: the Food and Agriculture Organization perspective. Rev. Sci. Tech. Off. Int. Epiz. 28, 293-305.
4. Edgar, R.C., 2004: MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32, 1792-1797.
5. Ghedin, E., N. A. Sengamalay, M. Shumway, J. Zaborsky, T. Feldblyum, V. Subbu, D. J. Spiro, J. Sitz, H. Koo, P. Bolotov, D. Dernovoy, T. Tatusova, Y. Bao, K. St George, J. Taylor, D. J. Lipman, C. M. Fraser, J. K. Taubenberger, and S. L. Salzberg, 2005: Large-scale sequencing of human influenza reveals the dynamic nature of viral genome evolution. Nature 437, 1162-1166.
6. Guan, Y., J. S. M. Peiris, A. S. Lipatov, T. M. Ellis, K. C. Dyrting, S. Krauss, L. J. Zhang, R. G. Webster, and K. F. Shortridge, 2002: Emergence of multiple genotypes of H5N1 avian influenza viruses in Hong Kong SAR. Proc. Natl Acad. Sci. USA 99, 8950-8955.
7. Henning, K. A., J. Henning, J. Morton, N. T. Long, N. T. Ha, and J. Meers, 2009: Farm- and flock-level risk factors associated with Highly Pathogenic Avian Influenza outbreaks on small holder duck and chicken farms in the Mekong Delta of Viet Nam. Prev. Vet. Med. 91, 179-188.
8. Henning, J., K. A. Henning, J. M. Morton, N. T. Long, N. T. Ha, L. T. Vu, P. P. Vu, D. M. Hoa, and J. Meers, 2010: Highly pathogenic avian influenza (H5N1) in ducks and in-contact chickens in backyard and smallholder commercial duck farms in Viet Nam. Prev. Vet. Med., in press.
9. Hinrichs, J., J. Otte, and J. Rushton, 2010: Technical, epidemiological, and financial implications of large-scale national vaccination campaigns to control HPAI H5N1. CAB Reviews 5, 021.
10. Le, M. T. Q., H. F. L. Wertheim, H. D. Nguyen, W. Taylor, P. V. M. Hoang, C. D. Vuong, H. L. K. Nguyen, H. H. Nguyen, T. Q. Nguyen, T. V. Nguyen, T. D. Van, B. T. Ngoc, T. N. Bui, B. G. Nguyen, L. T. Nguyen, S. T. Luong, P. H. Phan, H. V. Pham, T. Nguyen, A. Fox, C. V. Nguyen, H. Q. Do, M. Crusat, J. Farrar, H. T. Nguyen, M. D. de Jong, and P. Horby, 2008: Influenza A H5N1 clade 2.3.4 virus with a different antiviral susceptibility profile replaced clade 1 virus in humans in northern Vietnam. PLoS ONE 3, e3339.
11. Lee, C.-W., D. A. Senne, and D. L. Suarez, 2004: Effect of Vaccine Use in the Evolution of Mexican Lineage H5N2 Avian Influenza Virus. J. Virol. 78, 8372-8381.
12. Nguyen, T. D., T. V. Nguyen, D. Vijaykrishna, R. G. Webster, Y. Guan, J. S. M. Peiris, and G. J. D. Smith, 2008: Multiple Sublineages of Influenza A Virus (H5N1), Vietnam, 2005-2007. Emerg. Infect. Dis. 14, 632-636.
13. Nguyen, T., C. T. Davis, W. Stembridge, B. Shu, A. Balish, K. Inui, H. T. Do, H. T. Ngo, X.-F. Wan, M. McCarron, S. E. Lindstrom, N. J. Cox, C. V. Nguyen, A. I. Klimov, and R. O. Donis, 2009: Characterization of a highly pathogenic avian influenza H5N1 virus sublineage in poultry seized at ports of entry into Vietnam. Virology 387, 250-256.
14. OIE, 2008: Manual of Diagnostic Tests and Vaccines for Terrestrial Animals. OIE, Paris. Chapter 2.3.4. Avian influenza.
15. Peiris, J. S. M., M. D. de Jong, and Y. Guan, 2007: Avian Influenza Virus (H5N1): a Threat to Human Health. Clin. Microbiol. Rev. 20, 243-267.
16. Smith, G. J. D., T. S. P. Naipospos, T. D. Nguyen, M. D. de Jong, D. Vijaykrishna, T. B. Usman, S. S. Hassan, T. V. Nguyen, T. V. Dao, N. A. Bui, Y. H. C. Leung, C. L. Cheung, J. M. Rayner, J. X. Zhang, L. J. Zhang, L. L. M. Poon, K. S. Li, V. C. Nguyen, T. T. Hien, J. Farrar, R. G. Webster, H. Chen, J. S. M. Peiris, and Y. Guan, 2006a: Evolution and adaptation of H5N1 influenza virus in avian and human hosts in Indonesia and Vietnam. Virology 350, 258-268.
17. Smith, G. J. D., X. H. Fan, J. Wang, K. S. Li, K. Qin, J. X. Zhang, D. Vijaykrishna, C. L. Cheung, K. Huang, J. M. Rayner, J. S. M. Peiris, H. Chen, R. G. Webster, and Y. Guan, 2006b: Emergence and predominance of an H5N1 influenza variant in China. Proc. Natl Acad. Sci. USA 103, 16936-16941.
18. Stamatakis, A., 2006: RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22, 2688-2690.
19. Stamatakis, A., P. Hoover, and J. Rougemont, 2008: A rapid bootstrap algorithm for the RAxML Web servers. Syst. Biol. 57, 758-771.
20. Stevens, J., O. Blixt, T. M. Tumpey, J. K. Taubenberger, J. C. Paulson, and I. A. Wilson, 2006: Structure and receptor specificity of the hemagglutinin from an H5N1 influenza virus. Science 312, 404-410.
21. Tarantola, A., P. Barboza, V. Gauthier, S. Ioos, N. E. Omeiri, and M. Gastellu-Etchegorry, 2010: The influenza A(H5N1) epidemic at six and a half years: 500 notified human cases and more to come. Euro. Surv. 15, 1-5.
22. Tian, G., X. Zeng, Y. Li, J. Shi, and H. Chen, 2010: Protective Efficacy of the H5 Inactivated Vaccine Against Different Highly Pathogenic H5N1 Avian Influenza Viruses Isolated in China and Vietnam. Avian Dis. 54, 287-289.
23. Wan, X-F., T. Nguyen, C. T. Davis, C. B. Smith, Z-M. Zhao, M. Carrel, K. Inui, H. T. Do, D. T. Mai, S. Jadhao, A. Balish, B. Shu, F. Luo, M. Emch, Y. Matsuoka, S. E. Lindstrom, N. J. Cox, C. V. Nguyen, A. Klimov, and R. Donis, 2008: Evolution of highly pathogenic H5N1 avian influenza viruses in Vietnam between 2001 and 2007. PLoS ONE 3, e3462.
24. WHO Global Influenza Program, 2005: Evolution of H5N1 avian influenza viruses in Asia. Emerg. Infect. Dis. 11, 1515-1521.
25. WHO/OIE/FAO H5N1 Evolution Working Group, 2009: Continuing progress towards a unified nomenclature for the highly pathogenic H5N1 avian influenza viruses: divergence of clade 2.2 viruses. Influenza Other Respi. Viruses 3, 59-62.
26. Yen, H-L, J. R. Aldridge, A. C. M. Boon, N. A. Ilyushina, R. Salomon, D. J. Hulse-Post, H. Marjuki, J. Franks, D. A. Boltz, D. Bush, A. S. Lipatov, R. J. Webby, J. E. Rehg, and R. G. Webster, 2009: Changes in H5N1 influenza virus hemagglutinin receptor binding domain affect systemic spread. Proc. Natl Acad. Sci. USA 106, 286-291.