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Volumn 66, Issue 1, 2011, Pages 425-443

Conditional LZ complexity and its application in mtDNA sequence analysis

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EID: 80155206420     PISSN: 03406253     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (3)

References (40)
  • 1
    • 0026870164 scopus 로고
    • Reexamination of the African hominoid trichotomy with additional sequences from the primate beta-globin gene cluster
    • W. J. Bailey, K. Hayasaka, C. G. Skinner, S. Kehoe, L. C. Sieu, J. L. Slightom, M. Goodman, Reexamination of the African hominoid trichotomy with additional sequences from the primate beta-globin gene cluster, Mol. Phylog. Evol. 1 (1992) 97-135.
    • (1992) Mol. Phylog. Evol. , vol.1 , pp. 97-135
    • Bailey, W.J.1    Hayasaka, K.2    Skinner, C.G.3    Kehoe, S.4    Sieu, L.C.5    Slightom, J.L.6    Goodman, M.7
  • 2
    • 77955500711 scopus 로고    scopus 로고
    • Classification studies based on a spectral representation of DNA
    • D. Bielinska-Waz, S. Subramaniam, Classification studies based on a spectral representation of DNA, J. Theor. Bio. 266 (2010) 667-674.
    • (2010) J. Theor. Bio. , vol.266 , pp. 667-674
    • Bielinska-Waz, D.1    Subramaniam, S.2
  • 5
    • 0001941057 scopus 로고    scopus 로고
    • A compression algorithm for DNA sequences and its applications in genome comparison
    • X. Chen, S. Kwong, M. Li, A compression algorithm for DNA sequences and its applications in genome comparison, Genome Inform. Ser. Workshop Genome Inform. 10 (1999) 51-S1.
    • (1999) Genome Inform. Ser. Workshop Genome Inform. , vol.10
    • Chen, X.1    Kwong, S.2    Li, M.3
  • 6
    • 0000122573 scopus 로고
    • PHYLIP-phylogeny inference package (version 3.2)
    • J. Felsenstein, PHYLIP-phylogeny inference package (version 3.2), Cladistics 5 (1989) 164-166.
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 7
    • 0033499888 scopus 로고    scopus 로고
    • On the complexity measures of genetic sequences
    • V. D. Gusev, L. A. Nemytikova, N. A. Chuzhanova, On the complexity measures of genetic sequences, Bioinformatics 15 (1999) 994-999. (Pubitemid 30142656)
    • (1999) Bioinformatics , vol.15 , Issue.12 , pp. 994-999
    • Gusev, V.D.1    Nemytikova, L.A.2    Chuzhanova, N.A.3
  • 10
    • 20744444195 scopus 로고    scopus 로고
    • DNA date compression in the post genome era
    • S. Hisahiko, Y. Takashi, DNA date compression in the post genome era, Genome Informatics 12 (2001) 512-514.
    • (2001) Genome Informatics , vol.12 , pp. 512-514
    • Hisahiko, S.1    Takashi, Y.2
  • 11
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • J. P. Huelsenbeck, F. Ronquist, MRBAYES: Bayesian inference of phylogenetic trees, Bioinformatics 17 (2001) 754-755. (Pubitemid 32851390)
    • (2001) Bioinformatics , vol.17 , Issue.8 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 12
    • 0031026266 scopus 로고    scopus 로고
    • The complete mitochondrial genome of the wallaroo (Macropus robustus) and the phylogenetic relationship among Monotremata, Marsupialia, and Eutheria
    • DOI 10.1073/pnas.94.4.1276
    • A. Janke, X. Xu, U. Arnason, The complete mitochondrial genome of the wallaroo (Macropus robustus) and the phylogenetic relationship among Monotremata, Marsupialia, and Eutheria, Proc. Natl. Acad. Sci. 94 (1997) 1276-1281. (Pubitemid 27087841)
    • (1997) Proceedings of the National Academy of Sciences of the United States of America , vol.94 , Issue.4 , pp. 1276-1281
    • Janke, A.1    Xu, X.2    Arnason, U.3
  • 13
    • 0034945722 scopus 로고    scopus 로고
    • Phylogenetic analysis based on 18s rRNA gene and matK gene sequences of Panax vietnamensis and five related species
    • DOI 10.1055/s-2001-15821
    • K. Komatsu, S. Zhu, H. Fushimi, T. K. Qui, S. Cai, S. Kadota, Phylogenetic analysis based on 18s rRNA gene and matk gene sequences of Panax vietnamensis and five related species, Planta Med. 67 (2001) 461-465. (Pubitemid 32652585)
    • (2001) Planta Medica , vol.67 , Issue.5 , pp. 461-465
    • Komatsu, K.1    Zhu, S.2    Fushimi, H.3    Qu, T.K.4    Cai, S.5    Kadota, S.6
  • 14
    • 0027992767 scopus 로고
    • Mammalian phylogeny inferred from multiple protein data
    • DOI 10.1266/jjg.69.555
    • K. Kuma, T. Miyata, Mammalian phytogeny inferred from multiple protein data, Jpn. J. Genet. 69 (1994) 555-566. (Pubitemid 24352183)
    • (1994) Japanese Journal of Genetics , vol.69 , Issue.5 , pp. 555-566
    • Kuma, K.1    Miyata, T.2
  • 16
    • 0035102453 scopus 로고    scopus 로고
    • An information-based sequence distance and its application to whole mitochondrial genome phylogeny
    • M. Li, J. H. Badger, X. Chen, S. Kwong, P. Kearney, H. Y. Zhang, An informationbased sequence distance and its application to whole mitochondrial genome phylogeny, Bioinformatics 17 (2001) 149-154. (Pubitemid 32208523)
    • (2001) Bioinformatics , vol.17 , Issue.2 , pp. 149-154
    • Li, M.1    Badger, J.H.2    Chen, X.3    Kwong, S.4    Kearney, P.5    Zhang, H.6
  • 17
    • 33745009759 scopus 로고    scopus 로고
    • LZ complexity distance of DNA sequences and its application in phylogenetic tree reconstruction
    • B. Li, Y. B. Li, H. B. He, LZ complexity distance of DNA sequences and its application in phylogenetic tree reconstruction, Geno. Prot. Bioinfo. 3 (2005) 206-212. (Pubitemid 43863277)
    • (2005) Genomics, Proteomics and Bioinformatics , vol.3 , Issue.4 , pp. 206-212
    • Li, B.1    Li, Y.-B.2    He, H.-B.3
  • 18
    • 33745892626 scopus 로고    scopus 로고
    • Coronavirus phylogeny based on 2D graphical representation of DNA sequence
    • DOI 10.1002/jcc.20439
    • B. Liao, X. Y. Xiang, W. Zhu, Coronavirus phylogeny based on 2D graphical representation of DNA sequence, J. Comput. Chem. 27 (2006) 1196-1202. (Pubitemid 44049061)
    • (2006) Journal of Computational Chemistry , vol.27 , Issue.11 , pp. 1196-1202
    • Liao, B.1    Xiang, X.2    Zhu, W.3
  • 19
    • 33845372678 scopus 로고    scopus 로고
    • 3D graphical representation of DNA sequence without degeneracy and its applications in constructing phylogenic tree
    • B. Liao, W. Zhu, Y. Liu, 3D graphical representation of DNA sequence without degeneracy and its applications in constructing phylogenic tree, MATCH Commun. Math. Comput. Chem. 56 (2006) 209-216. (Pubitemid 44884592)
    • (2006) Match , vol.56 , Issue.1 , pp. 209-216
    • Liao, B.1    Zhu, W.2    Liu, Y.3
  • 20
    • 33646066834 scopus 로고    scopus 로고
    • Phylogenetic tree construction based on 2D graphical representation
    • B. Liao, X. Z. Shan, W. Zhu, R. F. Li, Phylogenetic tree construction based on 2D graphical representation, Chem. Phys. Lett. 422 (2006) 282-288.
    • (2006) Chem. Phys. Lett. , vol.422 , pp. 282-288
    • Liao, B.1    Shan, X.Z.2    Zhu, W.3    Li, R.F.4
  • 22
    • 19744369153 scopus 로고    scopus 로고
    • A relative similarity measure for the similarity analysis of DNA sequences
    • DOI 10.1016/j.cplett.2005.04.031, PII S000926140500549X
    • N. Liu, T. M. Wang, A relative similarity measure for the similarity analysis of DNA sequences, Chem. Phys. Lett. 498 (2005) 307-311. (Pubitemid 40743897)
    • (2005) Chemical Physics Letters , vol.408 , Issue.4-6 , pp. 307-311
    • Liu, N.1    Wang, T.-M.2
  • 23
    • 67249144770 scopus 로고    scopus 로고
    • A new method to analyze the similarity based on dual nucleotides of the DNA sequence
    • Z. Liu, B. Liao, W. Zhu, A new method to analyze the similarity based on dual nucleotides of the DNA sequence, MATCH Commun. Math. Comput. Chem. 61 (2009) 541-552.
    • (2009) MATCH Commun. Math. Comput. Chem. , vol.61 , pp. 541-552
    • Liu, Z.1    Liao, B.2    Zhu, W.3
  • 24
    • 0000028423 scopus 로고
    • A quantitative approach to a problem in classification
    • C. D. Michener, R. R. Sokal, A quantitative approach to a problem in classification, Evolution 11 (1957) 130-162.
    • (1957) Evolution , vol.11 , pp. 130-162
    • Michener, C.D.1    Sokal, R.R.2
  • 25
    • 0023634938 scopus 로고
    • Phylogenetic relations of humans and African apes from DNA sequences in the psi eta-globin region
    • M. M. Miyamoto, J. L. Slightom, M. Goodman, Phylogenetic relations of humans and African apes from DNA sequences in the psi eta-globin region, Science 238 (1987) 369-373. (Pubitemid 17151730)
    • (1987) Science , vol.238 , Issue.4825 , pp. 369-373
    • Miyamoto, M.M.1    Slightom, J.L.2    Goodman, M.3
  • 26
    • 0242643741 scopus 로고    scopus 로고
    • A new sequence distance measure for phylogenetic tree construction
    • DOI 10.1093/bioinformatics/btg295
    • H. H. Otu, K. Sayood, A new sequence distance measure for phylogenetic tree construction, Bioinformatics 19 (2003) 2122-2130. (Pubitemid 37408164)
    • (2003) Bioinformatics , vol.19 , Issue.16 , pp. 2122-2130
    • Otu, H.H.1    Sayood, K.2
  • 27
    • 0030076123 scopus 로고    scopus 로고
    • Evidence on mammalian phylogeny from sequences of exon 28 of the von Willebrand Factor gene
    • DOI 10.1006/mpev.1996.0008
    • C. Porter, M. Goodman, M. Stanhope, Evidence on mammalian phylogeny from sequences of exon 28 of the von Willebrand factor gene, Mol. Phylogenet. Evol. 5 (1996) 89-101. (Pubitemid 126316999)
    • (1996) Molecular Phylogenetics and Evolution , vol.5 , Issue.1 , pp. 89-101
    • Porter, C.A.1    Goodman, M.2    Stanhope, M.J.3
  • 28
    • 0037470662 scopus 로고    scopus 로고
    • Analysis of similarity/dissimilarity of DNA sequences based on novel 2-D graphical representation
    • DOI 10.1016/S0009-2614(03)00244-6, PII S0009261403002446
    • M. Randić, M. Vračko, N. Lers, D. Plavšić, Analysis of similarity/dissimilarity of DNA sequences based on novel 2-D graphical representation, Chetn. Phys. Lett. 371 (2003) 202-207. (Pubitemid 36316644)
    • (2003) Chemical Physics Letters , vol.371 , Issue.1-2 , pp. 202-207
    • Randic, M.1    Vracko, M.2    Lers, N.3    Plavsic, D.4
  • 29
    • 0034117084 scopus 로고    scopus 로고
    • Where do rodents fit? Evidence from the complete mitochondrial genome of Sciurus vulgaris [2]
    • A. Reyes, C. Gissi, G. Pesole, F. M. Catzeflis, C. Saccone, Where do rodents fit? Evidence from the complete mitochondrialgenome of Sciurus vulgaris, Mol. Biol. Evol. 17 (2000) 979-983. (Pubitemid 30346558)
    • (2000) Molecular Biology and Evolution , vol.17 , Issue.6 , pp. 979-983
    • Reyes, A.1    Gissi, C.2    Pesole, G.3    Catzeflis, F.M.4    Saccone, C.5
  • 30
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • F. Ronquist, J. P. Huelsenbeck, MrBayes 3: Bayesian phylogenetic inference under mixed models, Bioinformatics 19 (2003) 108-110.
    • (2003) Bioinformatics , vol.19 , pp. 108-110
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 32
    • 0029785077 scopus 로고    scopus 로고
    • Mammalian evolution and the interphotoreceptor retinoid binding protein (IRBP) gene: Convincing evidence for several superordinal clades
    • M. J. Stanhope, M. R. Smith, V. G. Waddell, C. A. Porter, M. S. Shivji, M. Goodman, Mammalian evolution and the interphotoreceptor retinoid binding protein (IRBP) gene: convincing evidence for several superordinal clades, J. Mol. Evol. 43 (1996) 83-92. (Pubitemid 26260207)
    • (1996) Journal of Molecular Evolution , vol.43 , Issue.2 , pp. 83-92
    • Stanhope, M.J.1    Smith, M.R.2    Waddell, V.G.3    Porter, C.A.4    Shivji, M.S.5    Goodman, M.6
  • 33
    • 80155124807 scopus 로고    scopus 로고
    • Genome phylogeny based on gene content
    • B. Snel, P. Bork, M. A. Huynen, Genome phylogeny based on gene content, Nature Genet. 19 (1999) 1572-1574.
    • (1999) Nature Genet. , vol.19 , pp. 1572-1574
    • Snel, B.1    Bork, P.2    Huynen, M.A.3
  • 34
    • 0036166508 scopus 로고    scopus 로고
    • Integrated gene and species phylogenies from unaligned whole genome protein sequences
    • G. W. Stuart, K. Moffet, S. Baker, Integrated gene and species phytogenies from unligned whole genome protein sequences, Bioinformatics 18 (2002) 100-108. (Pubitemid 34145037)
    • (2002) Bioinformatics , vol.18 , Issue.1 , pp. 100-108
    • Stuart, G.W.1    Moffett, K.2    Baker, S.3
  • 36
    • 0242496286 scopus 로고    scopus 로고
    • Conditional Lempel-Ziv complexity and its application to source coding theorem with side information
    • T. Uyematsu, S. Kuzuoka, Conditional Lempel-Ziv complexity and its application to source coding theorem with side information, IEICE Trans. Fundamentals Yokohama Japan 86 (2003) 2615-2618.
    • (2003) IEICE Trans. Fundamentals Yokohama Japan , vol.86 , pp. 2615-2618
    • Uyematsu, T.1    Kuzuoka, S.2
  • 38
    • 0018019231 scopus 로고
    • Compression of individual sequences via variable-rate coding
    • J. Ziv, A. Lempel, Compression of individual sequences by variable rate coding, IEEE Trans. Inform. Theory 24 (1978) 530-536. (Pubitemid 8631609)
    • (1978) IEEE Transactions on Information Theory , vol.IT-24 , Issue.5 , pp. 530-536
    • Ziv, J.1    Lempel, A.2
  • 39
    • 77953282732 scopus 로고    scopus 로고
    • Phylogenetic analysis of protein sequences based on conditional LZ complexity
    • S. Zhang, T. Wang, Phylogenetic analysis of protein sequences based on conditional LZ complexity, MATCH Commun. Math. Comput. Chem. 63 (2010) 701-716.
    • (2010) MATCH Commun. Math. Comput. Chem. , vol.63 , pp. 701-716
    • Zhang, S.1    Wang, T.2
  • 40
    • 77951115650 scopus 로고    scopus 로고
    • A novel method for constructing phylogenetic tree based on a dissimilarity matrix
    • W. Zhu, B. Liao, R. Li, A novel method for constructing phylogenetic tree based on a dissimilarity matrix, MATCH Commun. Math. Comput. Chem. 63 (2010) 483-492.
    • (2010) MATCH Commun. Math. Comput. Chem. , vol.63 , pp. 483-492
    • Zhu, W.1    Liao, B.2    Li, R.3


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