-
5
-
-
0032789448
-
Multiple sequence alignment: Algorithms and applications
-
DOI 10.1016/S0065-227X(99)80007-0
-
O. Gotoh Multiple sequence alignment: algorithms and applications Advanced Biophysics 36 1999 159 206 (Pubitemid 29344450)
-
(1999)
Advances in Biophysics
, vol.36
, pp. 159-206
-
-
Gotoh, O.1
-
6
-
-
79953307693
-
A comprehensive benchmark study of multiple sequence alignment methods: Current challenges and future perspectives
-
J.D. Thompson, B. Linard, O. Lecompte, and O. Poch A comprehensive benchmark study of multiple sequence alignment methods: current challenges and future perspectives PLoS ONE 6 3 2011 e18093
-
(2011)
PLoS ONE
, vol.6
, Issue.3
, pp. 18093
-
-
Thompson, J.D.1
Linard, B.2
Lecompte, O.3
Poch, O.4
-
7
-
-
78649828754
-
Issues in bioinformatics benchmarking: The case study of multiple sequence alignment
-
M.R. Aniba, O. Poch, and J.D. Thompson Issues in bioinformatics benchmarking: the case study of multiple sequence alignment Nucleic Acids Research 38 21 2010 7353 7363
-
(2010)
Nucleic Acids Research
, vol.38
, Issue.21
, pp. 7353-7363
-
-
Aniba, M.R.1
Poch, O.2
Thompson, J.D.3
-
8
-
-
70349866695
-
Upcoming challenges for multiple sequence alignment methods in the high-throughput era
-
C. Kemena, and C. Notredame Upcoming challenges for multiple sequence alignment methods in the high-throughput era Bioinformatics 25 19 2009 2455 2465
-
(2009)
Bioinformatics
, vol.25
, Issue.19
, pp. 2455-2465
-
-
Kemena, C.1
Notredame, C.2
-
9
-
-
80055045631
-
New challenges and strategies for multiple sequence alignment in the proteomics era
-
J.M. Walker, Springer
-
J.D. Thompson, and O. Poch New challenges and strategies for multiple sequence alignment in the proteomics era J.M. Walker, The Proteomics Protocols Handbook 2005 Springer 475 492
-
(2005)
The Proteomics Protocols Handbook
, pp. 475-492
-
-
Thompson, J.D.1
Poch, O.2
-
10
-
-
84887945601
-
Structural and evolutionary considerations for multiple sequence alignment of RNA, and the challenges for algorithms that ignore them
-
M.S. Rosenberg, University of California Press
-
K.M. Kjer, U. Roshan, and J.G. Gillepie Structural and evolutionary considerations for multiple sequence alignment of RNA, and the challenges for algorithms that ignore them M.S. Rosenberg, Sequence Alignment: Methods, Models, Concepts and Strategies 2009 University of California Press 105 150
-
(2009)
Sequence Alignment: Methods, Models, Concepts and Strategies
, pp. 105-150
-
-
Kjer, K.M.1
Roshan, U.2
Gillepie, J.G.3
-
12
-
-
0037411286
-
Workflow patterns
-
W.M.P. van der Aalst, A.H.M. ter Hofstede, B. Kiepuszewski, and A.P. Barros Workflow patterns Distributed and Parallel Databases 14 1 2003 5 51
-
(2003)
Distributed and Parallel Databases
, vol.14
, Issue.1
, pp. 5-51
-
-
Van Der Aalst, W.M.P.1
Ter Hofstede, A.H.M.2
Kiepuszewski, B.3
Barros, A.P.4
-
13
-
-
0014757386
-
A general method applicable to the search for similarities in the amino acid sequences of two proteins
-
S. Needleman, and C. Wunsch A general method applicable to the search for similarities in the amino acid sequences of two proteins Journal of Molecular Biology 48 1970 443 453
-
(1970)
Journal of Molecular Biology
, vol.48
, pp. 443-453
-
-
Needleman, S.1
Wunsch, C.2
-
14
-
-
0000303438
-
The multiple sequence alignment problem in biology
-
H. Carillo, and D. Lipman The multiple sequence alignment problem in biology SIAM Journal of Applied Mathematics 48 5 1988 1073 1082
-
(1988)
SIAM Journal of Applied Mathematics
, vol.48
, Issue.5
, pp. 1073-1082
-
-
Carillo, H.1
Lipman, D.2
-
17
-
-
0028679709
-
On the complexity of multiple sequence alignment
-
L. Wang, and T. Jiang On the complexity of multiple sequence alignment Journal of Computational Biology 1 4 1994 337 348
-
(1994)
Journal of Computational Biology
, vol.1
, Issue.4
, pp. 337-348
-
-
Wang, L.1
Jiang, T.2
-
18
-
-
0036208872
-
Recent progress in multiple sequence alignment: A survey
-
DOI 10.1517/14622416.3.1.131
-
C. Notredame Recent progress in multiple sequence alignment: a survey Pharmacogenomics 3 2002 131 144 (Pubitemid 34285245)
-
(2002)
Pharmacogenomics
, vol.3
, Issue.1
, pp. 131-144
-
-
Notredame, C.1
-
19
-
-
33744811392
-
Multiple sequence alignment
-
DOI 10.1016/j.sbi.2006.04.004, PII S0959440X06000704
-
R.C. Edgar, and S. Batzoglou Multiple sequence alignment Current Opinion in Structural Biology 16 2006 368 373 (Pubitemid 43831644)
-
(2006)
Current Opinion in Structural Biology
, vol.16
, Issue.3
, pp. 368-373
-
-
Edgar, R.C.1
Batzoglou, S.2
-
20
-
-
0023084055
-
Progressive sequence alignment as a prerequisite to correct phylogenetic trees
-
D. Feng, and R. Doolittle Progressive sequence alignment as a prerequisite to correct phylogenetic trees Journal of Molecular Evolution 25 1987 351 360
-
(1987)
Journal of Molecular Evolution
, vol.25
, pp. 351-360
-
-
Feng, D.1
Doolittle, R.2
-
21
-
-
0029935866
-
Progressive alignment of amino acid sequences and construction of phylogenetic trees from them
-
DOI 10.1016/S0076-6879(96)66023-6
-
D. Feng, and R. Doolittle Progressive alignment of amino acid sequences and construction of phylogenetic trees from them Methods in Enzymology 266 1996 368 382 (Pubitemid 26165877)
-
(1996)
Methods in Enzymology
, vol.266
, pp. 368-382
-
-
Feng, D.-F.1
Doolittle, R.F.2
-
24
-
-
33746334454
-
Discovering expressive process models by clustering log traces
-
DOI 10.1109/TKDE.2006.123, 1644726
-
G. Greco, A. Guzzo, L. Pontieri, and D. Sacca Discovering expressive process models by clustering log traces IEEE Transactions on Knowledge and Data Engineering 2006 1010 1027 (Pubitemid 44109532)
-
(2006)
IEEE Transactions on Knowledge and Data Engineering
, vol.18
, Issue.8
, pp. 1010-1027
-
-
Greco, G.1
Guzzo, A.2
Pontieri, L.3
Sacca, D.4
-
26
-
-
13244255415
-
MUSCLE: A multiple sequence alignment method with reduced time and space complexity
-
DOI 10.1186/1471-2105-5-113
-
R.C. Edgar MUSCLE: a multiple sequence alignment with reduced time and space complexity BMC Bioinformatics 5 2004 113 10.1186/1471-2105-5-113 (Pubitemid 40195393)
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 113
-
-
Edgar, R.C.1
-
28
-
-
44649129189
-
Outlier detection techniques for process mining applications
-
DOI 10.1007/978-3-540-68123-6-17, Foundations of Intelligent Systems - 17th International Symposium, ISMIS 2008, Proceedings
-
L. Ghionna, G. Greco, A. Guzzo, and L. Pontieri Outlier detection techniques for process mining applications Proceedings of the 17th International Symposium on Methodologies for Intelligent Systems (ISMIS) 2008 Springer-Verlag 150 159 (Pubitemid 351775889)
-
(2008)
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
, vol.4994
, pp. 150-159
-
-
Ghionna, L.1
Greco, G.2
Guzzo, A.3
Pontieri, L.4
-
29
-
-
80052812089
-
Mining usage scenarios in business processes: Outlier-aware discovery and run-time prediction
-
http://10.1016/j.datak.2011.07.002 in press, doi
-
F. Folino, G. Greco, A. Guzzo, L. Pontieri, Mining usage scenarios in business processes: outlier-aware discovery and run-time prediction, Data and Knowledge Engineering, in press, doi: 10.1016/j.datak.2011.07.002.
-
Data and Knowledge Engineering
-
-
Folino, F.1
Greco, G.2
Guzzo, A.3
Pontieri, L.4
-
32
-
-
0020848951
-
Survey of recent advances in hierarchical clustering algorithms
-
F. Murtagh A survey of recent advances in hierarchical clustering algorithms The Computer Journal 26 4 1983 354 359 (Pubitemid 14590891)
-
(1983)
Computer Journal
, vol.26
, Issue.4
, pp. 354-359
-
-
Murtagh, F.1
-
33
-
-
0003126317
-
A general theory of classificatory sorting strategies
-
G.N. Lance, and W.T. Williams A general theory of classificatory sorting strategies The Computer Journal 9 1967 373 380
-
(1967)
The Computer Journal
, vol.9
, pp. 373-380
-
-
Lance, G.N.1
Williams, W.T.2
-
35
-
-
79957467833
-
Mining context-dependent and interactive business process maps using execution patterns
-
M. zur Muehlen, J. Su, Springer-Verlag
-
J. Li, R.P.J.C. Bose, and W.M.P. van der Aalst Mining context-dependent and interactive business process maps using execution patterns M. zur Muehlen, J. Su, BPM 2010 Workshops, Lecture Notes in Business Information Processing vol. 66 2011 Springer-Verlag 109 121
-
(2011)
BPM 2010 Workshops, Lecture Notes in Business Information Processing
, vol.66
, pp. 109-121
-
-
Li, J.1
Bose, R.P.J.C.2
Van Der Aalst, W.M.P.3
-
36
-
-
34248363117
-
Multiple sequence alignment with user-defined anchor points
-
B. Morgenstern, S.J. Prohaska, D. Pöhler, and P.F. Stadler Multiple sequence alignment with user-defined anchor points Algorithms for Molecular Biology 1 6 2006 1 12
-
(2006)
Algorithms for Molecular Biology
, vol.1
, Issue.6
, pp. 1-12
-
-
Morgenstern, B.1
Prohaska, S.J.2
Pöhler, D.3
Stadler, P.F.4
-
37
-
-
0036203448
-
Multiple sequence alignment using partial order graphs
-
C. Lee, C. Grasso, and M.F. Sharlow Multiple sequence alignment using partial order graphs Bioinformatics 18 3 2002 452 464 (Pubitemid 34284947)
-
(2002)
Bioinformatics
, vol.18
, Issue.3
, pp. 452-464
-
-
Lee, C.1
Grasso, C.2
Sharlow, M.F.3
-
38
-
-
3543097981
-
Combining partial order alignment and progressive multiple sequence alignment increases alignment speed and scalability to very large alignment problems
-
DOI 10.1093/bioinformatics/bth126
-
C. Grasso, and C. Lee Combining partial order alignment and progressive multiple sequence alignment increases alignment speed and scalability to very large alignment problems Bioinformatics 20 10 2004 1546 1556 (Pubitemid 39023158)
-
(2004)
Bioinformatics
, vol.20
, Issue.10
, pp. 1546-1556
-
-
Grasso, C.1
Lee, C.2
-
40
-
-
35748949584
-
Conformance checking of processes based on monitoring real behavior
-
DOI 10.1016/j.is.2007.07.001, PII S030643790700049X
-
A. Rozinat, and W.M.P. van der Aalst Conformance checking of processes based on monitoring real behavior Information Systems 33 1 2008 64 95 (Pubitemid 350051578)
-
(2008)
Information Systems
, vol.33
, Issue.1
, pp. 64-95
-
-
Rozinat, A.1
Van Der Aalst, W.M.P.2
-
42
-
-
36549005538
-
PFAAT version 2.0: A tool for editing, annotating, and analyzing multiple sequence alignments
-
C. Daniel, D. Paul, M. Vidhya, O. Marco, H. Eun-Jong, W. Yaoyu, S. Shyamal, C. Brian, P. Shobha, and H. Enoch PFAAT version 2.0: a tool for editing, annotating, and analyzing multiple sequence alignments BMC Bioinformatics 8 1 2007 381
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.1
, pp. 381
-
-
Daniel, C.1
Paul, D.2
Vidhya, M.3
Marco, O.4
Eun-Jong, H.5
Yaoyu, W.6
Shyamal, S.7
Brian, C.8
Shobha, P.9
Enoch, H.10
|