[21] Progressive alignment of amino acid sequences and construction of phylogenetic trees from them

Methods in Enzymology

Volumn 266, Issue , 1996, Pages 368-381

  Feng, Da Fei ^a   Doolittle, Russell F ^a  

^a NONE

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; ARTICLE; AUTOMATION; COMPUTER PROGRAM; PHYLOGENY; PRIORITY JOURNAL;

AMINO ACID SEQUENCE; ANIMALS; BACTERIA; DATABASES, FACTUAL; DECISION TREES; HUMANS; L-LACTATE DEHYDROGENASE; MOLECULAR SEQUENCE DATA; PHYLOGENY; PROTEINS; SEQUENCE HOMOLOGY, AMINO ACID; SOFTWARE;

EID: 0029935866     PISSN: 00766879     EISSN: None     Source Type: Book Series    
DOI: 10.1016/s0076-6879(96)66023-6     Document Type: Article

References (21)

1. S. B. Needleman and C. D. Wunsch, J. Mol. Biol. 48, 443 (1970).
2. M. O. Dayhoff, R. V. Eck, and C. M. Park, in "Atlas of Protein Sequence and Structure" (M. O. Dayhoff, ed.), Vol. 5, p 89. National Biomedical Research Foundation, Washington, D.C., 1972.
3. R. M. Schwartz and M. O. Dayhoff, in "Atlas of Protein Sequence and Structure" (M. O. Dayhoff, ed.), Vol. 5, Suppl. 3, p. 353. National Biomedical Research Foundation, Washington, D.C., 1978.
4. R. A. Jue, N. W. Woodbury, and R. F. Doolittle, J. Mol. Evol. 15, 129 (1979).
5. M. Murata, J. S. Richardson, and J. L. Sussman, Proc. Natl Acad. Sci. U.S.A. 82, 3073 (1985).
6. M. S. Johnson and R. F. Doolittle, J. Mol. Evol. 23, 267 (1986).
7. D. F. Feng and R. F. Doolittle, J. Mol. Evol. 25, 351 (1987).
8. W. R. Taylor, CABIOS 3, 81 (1987).
9. G. J. Barton and M. J. E. Sternberg, J. Mol. Biol. 198, 327 (1987).
10. D. F. Feng and R. F. Doolittle, this series, Vol. 183, p. 375.
11. B. W. Kernighan and D. M. Ritchie, "The C Programming Language." Prentice-Hall, Englewood Cliffs, New Jersey, 1978.
12. D. F. Feng, M. S. Johnson, and R. F. Doolittle, J. Mol. Evol. 21, 112 (1985).
13. R. F. Doolittle, "URFs and ORFs: A Primer on How to Analyze Derived Amino Acid Sequences," p. 21. University Science Books, Mill Valley, California, 1986.
14. W. M. Fitch and E. Margoliash, Science 155, 279 (1967).
15. G. H. Gonnet, M. A. Cohen, and S. A. Benner, Science 256, 1443 (1992).
16. S. Henikoff and J. G. Henikoff, Proteins: Struct. Funct. Genet. 89, 10915 (1992).
17. L. C. Klotz and R. L. Blanken, J. Theor. Biol. 91, 261 (1981).
18. W.-H. Li, Proc. Natl. Acad. Sci. U.S.A. 78, 1085 (1981).
19. J. Felsenstein, Evolution 39, 783 (1985).
20. W. M. Fitch, Am. Nat. 111, 223 (1977).
21. J. Felsenstein's PHYLIP programs can be obtained by anonymous ftp from 128.95.12.41.