Development of a gene cloning system in a fast-growing and moderately thermophilic Streptomyces species and heterologous expression of Streptomyces antibiotic biosynthetic gene clusters

BMC Microbiology

Volumn 11, Issue , 2011, Pages

  Chen, Weihua ^a   Qin, Zhongjun ^a  

^a INSTITUTE OF PLANT PHYSIOLOGY AND ECOLOGY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ACTINORHODINE; ANTHRAMYCIN; ANTIINFECTIVE AGENT; BACTERIAL PROTEIN;

ANTIBIOTIC BIOSYNTHESIS; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; DRUG IDENTIFICATION; DRUG ISOLATION; GENE CLUSTER; MESOPHILIC BACTERIUM; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PLASMID; PROTEIN EXPRESSION; SPOROGENESIS; STREPTOMYCES; THERMOPHILIC BACTERIUM; BIOSYNTHESIS; EVALUATION; GENE EXPRESSION; GENETICS; GROWTH, DEVELOPMENT AND AGING; HEAT; METABOLISM; METHODOLOGY; MULTIGENE FAMILY;

BACILLUS (BACTERIUM); BACTERIA (MICROORGANISMS); STREPTOMYCES; STREPTOMYCES COELICOLOR; STREPTOMYCES REFUINEUS;

ANTI-BACTERIAL AGENTS; BACTERIAL PROTEINS; CLONING, MOLECULAR; GENE EXPRESSION; HOT TEMPERATURE; MULTIGENE FAMILY; STREPTOMYCES;

EID: 80054973992     PISSN: None     EISSN: 14712180     Source Type: Journal    
DOI: 10.1186/1471-2180-11-243     Document Type: Article

References (49)

1. Bioactive microbial metabolites. Bérdy J, J Antibiot (Tokyo) 2005 58 1 26 10.1038/ja.2005.1
2. Genetics of differentiation in Streptomyces. Chater KF, Annu Rev Microbiol 1993 47 685 713 10.1146/annurev.mi.47.100193.003345 7504906 (Pubitemid 23302949)
3. Forty years of genetics with Streptomyces: from in vivo through in vitro to in silico. Hopwood DA, Microbiology 1999 145 Pt 9 2183 2202 10517572 (Pubitemid 29454337)
4. Soil to genomics: the Streptomyces chromosome. Hopwood DA, Annu Rev Genet 2006 40 1 23 10.1146/annurev.genet.40.110405.090639 16761950 (Pubitemid 44956777)
5. Plasmids, recombination and chromosome mapping in Streptomyces lividans 66. Hopwood DA, Kieser T, Wright HM, Bibb MJ, J Gen Microbiol 1983 129 2257 2269 6631413 (Pubitemid 13046137)
6. Practical Streptomyces Genetics. Kieser T, Bibb MJ, Buttner MJ, Chater KF, Hopwood DA, The John Innes Institute, The John Innes Foundation Press 2000
7. Ueber Actinomyces thermophilus und andere Actinomyceten. Gilbert R, Zeitschrift für Hygiene und Infektionskeiten 1904 47 383 406 10.1007/BF02284567 19349661
8. Thermophilic actinomycetes and fungi in soils and in composts. Waksman SA, Umbreit WW, Cordon TC, Soil Science 1939 47 37 61 10.1097/00010694- 193901000-00005
9. Approved lists of bacterial names. Skerman VBD, McGowan V, Sneath PHA, Int J Syst Bacteriol 1980 30 225 420 10.1099/00207713-30-1-225 (Pubitemid 10114719)
10. Numerical classification of thermophilic streptomycetes. Goodfellow M, Lacey J, Todd C, J Gen Microbiol 1987 133 3135 3149
11. Streptomyces thermocarboxydovorans sp. nov. and Streptomyces thermocarboxydus sp. nov., two moderately thermophilic carboxydotrophic species from soil. Kim SB, Falconer C, Williams E, Goodfellow M, Int J Syst Bacteriol 1998 48 59 68 10.1099/00207713-48-1-59 9542077 (Pubitemid 28144639)
12. Streptomyces thermospinisporus sp. nov., a moderately thermophilic carboxydotrophic streptomycete isolated from soil. Kim SB, Goodfellow M, Int J Syst Evol Microbiol 2002 52 1225 1228 10.1099/ijs.0.02003-0 12148632 (Pubitemid 34846420)
13. Streptomyces thermogriseus, a new species of the genus Streptomyces from soil, lake and hot-spring. Xu LH, Tiang YQ, Zhang YF, Zhao LX, Jiang CL, Int J Syst Bacteriol 1998 48 1089 1093 10.1099/00207713-48-4-1089 9828410
14. Streptomyces thermoautotrophicus sp. nov., a thermophilic CO- and H(2)-oxidizing obligate chemolithoautotroph. Gadkari D, Schricker K, Acker G, Kroppenstedt RM, Meyer O, Appl Environ Microbiol 1990 56 3727 3734 16348374
15. Isolation properties and potential applications of thermophilic actinomycetes. Edwards C, Appl Biochem Biotech 1993 42 161 179 10.1007/BF02788050
16. The effects of temperature on growth and production of the antibiotic granaticin by a thermotolerant streptomycete. James PD, Edwards C, J Gen Microbiol 1989 135 1997 2003 2575655 (Pubitemid 19197061)
17. Purification, properties, and partial amino acid sequences of thermostable xylanases from Streptomyces thermoviolaceus OPC-520. Tsujibo H, Miyamoto K, Kuda T, Minami K, Sakamoto T, Hasegawa T, Inamori Y, Appl Environ Microbiol 1992 58 371 375 1539982
18. Sequence of the Streptomyces thermoviolaceus CUB74 alpha-amylase-encoding gene and its transcription analysis in Streptomyces lividans. Bahri SM, Ward JM, Gene 1993 127 133 137 10.1016/0378-1119(93)90628-G 8486279 (Pubitemid 23140457)
19. Isolation and characterization of anthramycin, a new antitumor antibiotic. Leimgruber W, Stefanovi V, Schenker F, Karr A, Berger J, J Am Chem Soc 1965 87 5791 5793 10.1021/ja00952a050 5845427
20. Regulation of the expression of amy TO1 encoding a thermostable alpha-amylase from Streptomyces sp. TO1, in its original host and in Streptomyces lividans TK24. Mellouli L, Guerineau M, Bejar S, Virolle MJ, FEMS Microbiol Lett 1999 181 31 39 10564786 (Pubitemid 29516600)
21. An inducible Streptomyces gene cluster involved in aromatic compound metabolism. Park HJ, Kim ES, FEMS Microbiol Lett 2003 226 151 157 10.1016/S0378-1097(03)00585-8 13129621 (Pubitemid 38444910)
22. Reassembly of anthramycin biosynthetic gene cluster by using recombinogenic cassettes. Hu Y, Phelan VV, Farnet CM, Zazopoulos E, Bachmann BO, Chembiochem 2008 9 1603 1608 10.1002/cbic.200800029 18512205
23. Biosystematics and diversity amongst novel carboxydotrophic actinomycetes. O'Donnell AG, Falconer C, Goodfellow M, Ward AC, Williams E, Antonie Van Leeuwenhoek 1993 64 325 340 8085794 (Pubitemid 24151596)
24. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Saitou N, Nei M, Mol Biol Evol 1987 4 406 425 3447015
25. Analysis of thermophilic clades within the genus Streptomyces by 16S ribosomal DNA sequence comparisons. Kim D, Chun J, Sahin N, Hah Y, Goodfellow M, Int J Syst Bacteriol 1996 46 581 587 10.1099/00207713-46-2-581 (Pubitemid 26113888)
26. Mycelium differentiation and antibiotic production in submerged cultures of Streptomyces coelicolor. Manteca A, Alvarez R, Salazar N, Yagüe P, Sanchez J, Appl Environ Microbiol 2008 74 3877 3886 10.1128/AEM.02715-07 18441105 (Pubitemid 351874920)
27. Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2). Bentley SD, Chater KF, Cerdeno-Tarraga AM, Challis GL, Thomson NR, James KD, Harris DE, Quail MA, Kieser H, Harper D, Bateman A, Brown S, Chandra G, Chen CW, Collins M, Cronin A, Fraser A, Goble A, Hidalgo J, Hornsby T, Howarth S, Huang CH, Kieser T, Larke L, Murphy L, Oliver K, O'Neil S, Rabbinowitsch E, Rajandream MA, Rutherford K, Rutter S, Seeger K, Saunders S, Sharp D, Squares R, Squares S, Taylor K, Warren T, Wietzorrek A, Woodward J, Barrell BG, Parkhill J, Hopwood DA, Nature 2002 417 141 147 10.1038/417141a 12000953 (Pubitemid 34506788)
28. FramePlot: a new implementation of the frame analysis for predicting protein-coding regions in bacterial DNA with a high G + C content. Ishikawa J, Hotta K, FEMS Microbiol Lett 1999 174 251 253 10.1111/j.1574-6968.1999.tb13576.x 10339816 (Pubitemid 29217014)
29. pIJ101, a multi-copy broad host-range Streptomyces plasmid: functional analysis and development of DNA cloning vectors. Kieser T, Hopwood DA, Wright HM, Thompson CJ, Mol Gen Genet 1982 185 2 223 238 10.1007/BF00330791 6283316
30. Complete nucleotide sequence and characterization of pSNA1 from pimaricin-producing Streptomyces natalensis that replicates by a rolling circle mechanism. Mendes MV, Aparicio JF, Martin JF, Plasmid 2000 43 2 159 165 10.1006/plas.1999.1446 10686136 (Pubitemid 30141777)
31. Cloning and expression of the tyrosinase gene from Streptomyces antibioticus in Streptomyces lividans. Katz E, Thompson CJ, Hopwood DA, J Gen Microbiol 1983 129 2703 2714 6313861 (Pubitemid 13024809)
32. Variation in the replication loci of Streptomyces linear plasmids. Zhang R, Xia H, Guo P, Qin Z, FEMS Microbiol Lett 2009 290 209 216 19054078
33. Characterization of the replication and conjugation loci of Streptomyces circular plasmids pFP11 and pFP1 and their ability to propagate in linear mode with artificially attached telomeres. Zhang R, Zeng A, Fang P, Qin Z, Appl Environ Microbiol 2008 74 3368 3376 10.1128/AEM.00402-08 18390681 (Pubitemid 351812790)
34. Streptomyces coelicolor A3(2) plasmid SCP2*: deductions from the complete sequence. Haug I, Weissenborn A, Brolle D, Bentley S, Kieser T, Altenbuchner J, Microbiology 2003 149 505 513 10.1099/mic.0.25751-0 12624212 (Pubitemid 36285207)
35. Excision of chromosomal DNA sequences from Streptomyces coelicolor forms a novel family of plasmids detectable in Streptomyces lividans. Bibb MJ, Ward JM, Kieser T, Cohen SN, Hopwood DA, Mol Gen Genet 1981 184 2 230 240 6948998 (Pubitemid 12174243)
36. Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis. Ikeda H, Ishikawa J, Hanamoto A, Shinose M, Kikuchi H, Shiba T, Sakaki Y, Hattori M, Omura S, Nat Biotechnol 2003 21 5 526 531 10.1038/nbt820 12692562 (Pubitemid 36532017)
37. Site-specific degradation of Streptomyces lividans DNA during electrophoresis in buffers contaminated with ferrous iron. Zhou X, Deng Z, Firmin JL, Hopwood DA, Kieser T, Nucleic Acids Res 1988 16 4341 4352 10.1093/nar/16.10.4341 2837731
38. Plasmid cloning vectors for the conjugal transfer of DNA from Escherichia coli to Streptomyces spp. Bierman M, Logan R, Obrien K, Seno ET, Rao RN, Schoner BE, Gene 1992 116 1 43 49 10.1016/0378-1119(92)90627-2 1628843
39. Production of actinorhodin related "blue pigments" by Streptomyces coelicolor A3(2). Bystrykh LV, FernandezMoreno MA, Herrema JK, Malpartida F, Hopwood DA, Dijkhuizen L, J Bacteriol 1996 178 8 2238 2244 8636024
40. Effect of fermentation temperature on validamycin A production by Streptomyces hygroscopicus 5008. Liao YQ, Wei ZH, Bai LQ, Deng ZX, Zhong JJ, J Biotechnol 2009 142 271 274 10.1016/j.jbiotec.2009.04.015 19445979
41. Benzodiazepine biosynthesis in Streptomyces refuineus. Hu Y, Phelan V, Ntai I, Farnet CM, Zazopoulos E, Bachmann BO, Chem Biol 2007 14 691 701 10.1016/j.chembiol.2007.05.009 17584616 (Pubitemid 46929091)
42. Sambrook J, Fritsch EF, Maniatis T, Molecular Cloning: A Laboratory Manual Cold Spring Harbor, Cold Spring Harbor Laboratory Press 1989
43. Improved enumeration of Streptomyces spp. on a starch casein salt medium. Mackay SJ, Appl Environ Microbiol 1977 33 227 230 848946
44. Factors affecting the isolation of ccc DNA from Streptomyces lividans and Escherichia coli. Kieser T, Plasmid 1984 12 19 36 10.1016/0147-619X(84)90063-5 6387733 (Pubitemid 14046088)
45. Transformation of plasmid DNA into Streptomyces at high frequency. Bibb MJ, Ward JM, Hopwood DA, Nature 1978 274 398 400 10.1038/274398a0 672966 (Pubitemid 8387348)
46. Identification and characterization of a pSLA2 plasmid locus required for linear DNA replication and circular plasmid stable inheritance in Streptomyces lividans. Qin Z, Shen M, Cohen SN, J Bacteriol 2003 185 6575 6582 10.1128/JB.185.22.6575-6582.2003 14594830 (Pubitemid 37385876)
47. Construction of an ordered cosmid library of S. avermitilis for genetic modification of the industrial strains. Xia H, Huang J, Hu M, Shen M, Xie P, Zhang L, Wang H, Qin Z, Chin J antibiot 2009 34 340 343
48. High efficiency vectors for cosmid microcloning and genomic analysis. Evans GA, Lewis K, Rothenberg BE, Gene 1989 79 1 9 20 10.1016/0378-1119(89) 90088-7 2777090 (Pubitemid 19160731)
49. A repressor-response regulator gene pair controlling jadomycin B production in Streptomyces venezuelae ISP5230. Yang K, Han L, He J, Wang L, Vining LC, Gene 2001 279 165 173 10.1016/S0378-1119(01)00723-5 11733141 (Pubitemid 33132178)