Evaluation of genetic diversity among Iranian accessions of Ocimum spp. using AFLP markers

Biochemical Systematics and Ecology

Volumn 39, Issue 4-6, 2011, Pages 619-626

  Moghaddam, Mohammad ^a   Omidbiagi, Reza ^a   Naghavi, Mohammad Reza ^b  

^a TARBIAT MODARES UNIVERSITY   (Iran)

^b UNIVERSITY OF TEHRAN   (Iran)

Author keywords

Amplified fragment length polymorphism (AFLP); Basil; Genetic diversity; Germplasm; Lamiaceae; Molecular markers; Ocimum

Indexed keywords

BIOMARKER; CLUSTER ANALYSIS; COHORT ANALYSIS; DIVERSITY INDEX; GENETIC MARKER; GENETIC VARIATION; GERMPLASM; HERB; POLYMORPHISM;

LAMIACEAE; MAGNOLIOPHYTA; OCIMUM; OCIMUM BASILICUM; OCIMUM MINIMUM;

EID: 80054882768     PISSN: 03051978     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bse.2011.05.006     Document Type: Article

References (30)

1. Azizi A., Wagner C., Honermeier B., Friedt W. Intraspecific diversity and relationship between subspecies of Origanum vulgare revealed by comparative AFLP and SAMPL marker analysis. Plant Syst. Evol. 2009, 281:151-160.
2. Baydar N.G., Baydar H., Debener T. Analysis of genetic relationships among Rosa damascena plants grown in Turkey by using AFLP and microsatellite markers. J. Biotechnol. 2004, 111:263-267.
3. Botstein D., White R.L., Skolnick M., Davis R.W. Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am. J. Hum. Genet. 1980, 32:314-331.
4. Carović-Stanko K., Liber Z., Besendorfer V., Javornik B., Bohanec B., Kolak I., Satovic Z. Genetic relations among basil taxa (Ocimum L.) based on molecular markers, nuclear DNA content, and chromosome number. Plant Syst. Evol. 2010, 285:13-22.
5. Darrah H. The Cultivated Basil 1980, Thomas Buckeye Printing Co., Independence, MI, 82p.
6. De Masi L., Siviero P., Esposito C., Castaldo D., Siano F., Laratta B. Assessment of agronomic, chemical and genetic variability in common basil (Ocimum basilicum L.). Eur. Food Res. Technol. 2006, 223:273-281.
7. Grayer R.J., Bryan S.E., Veitch N.C., Goldstone F.J., Paton A., Wollenweber E. External flavones in sweet basil, Ocimum basilicum, and related taxa. Phytochemistry 1996, 43(5):1041-1047.
8. Grayer R.J., Kite G.C., Goldstone F.J., Bryan S.E., Paton A., Putievsky E. Infraspecific taxonomy and essential oil chemotypes in sweet basil, Ocimum basilicum. Phytochemistry 1996, 43(5):1033-1039.
9. Harisaranraj R., Prasitha R., Saravana Babu S., Suresh K. Analysis of inter-species relationships of Ocimum species using RAPD markers. Ethnobotanical Leaflets 2008, 12:609-613.
10. Holm Y. Bioactivity of basil. Basil: The Genus Ocimum 1999, 113-135. Hawood Academic, Amsterdam. Y. Holm, R. Hiltuen (Eds.).
11. Kongkiatngam P., Waterway M.J., Fortin M.G., Coulman B.E. Genetic variation within and among cultivars of red clover (Trifolium pratense): comparisions of morphological, isozyme and RAPD markers. Euphytica 1995, 84:237-246.
12. Labra M., Miele M., Ledda B., Grassi F., Mazzei M., Sala F. Morphological characterization, essential oil composition and DNA genotyping of Ocimum basilicum L. cultivars. Plant Sci. 2004, 167:725-731.
13. Makari O., Kintzios S. Ocimum sp. (Basil): botany, cultivation, pharmaceutical properties, and biotechnology. J. Herbs, Spices Med. Plants 2008, 13(3):123-150.
14. Nei M. Analysis of gene diversity in subdivided populations. Proc. Natl. Acad. Sci. U.S.A. 1973, 70:3321-3323.
15. Paton A., Putievesky E. Taxonomic problems and cytotaxonomic relationships between and within varieties of Ocimum basilicum and related species (Labiatae). Kew Bull. 1996, 51:509-524.
16. Paton A., Harley R.M., Harley M.M. Ocimum- an overview of relationships and classification. Basil: The Genus Ocimum 1999, 1-33. Hawood Academic, Amsterdam. Y. Holm, R. Hiltuen (Eds.).
17. Powell W., Morgante M., Andre C., Hanafey M., Vogel J., Tingey S., Rafalski A. The comparison of RFLP, RAPD, AFLP, and SSR (microsatellite) markers for germplasm analysis. Mol. Breed 1996, 2:225-238.
18. Pushpangadan P., Sobti S.N. Cytogenetical studies in the genus Ocimum. 1. Origin of O. americanum, cytotaxonomical and experimental proof. Cytologia 1982, 47:575-583.
19. Rahimmalek M., Tabatabaei B.E.S., Arzani A., Etemadi N. Assessment of genetic diversity among and within Achillea species using amplified fragment length polymorphism (AFLP). Biochem. Syst. Ecol. 2009, 37:354-361.
20. Rohlf F.J. NTSYS-pc Numerical Taxonomy and Multivariate Analysis System, Version 2.02 1998, Exeter Software, Setauket, NY.
21. Russi L., Moretti C., Raggi L., Albertini E., Falistocco E. Identifying commercially relevant Echinacea species by AFLP molecular markers. Genome 2009, 52(11):912-918.
22. Shaheen N., Pearce S.R., Khan M.A., Mahmood T., Yasmin G., Hayat M.Q. AFLP mediated genetic diversity of Malvaceae species. J. Med. Plants Res. 2010, 4(2):148-154.
23. Simon J.E., Quinn J., Murray R.G. Basil: a source of essential oils. Advances in New Crops 1990, 484-489. Timber Press, Portland, Oregon. J. Janick, J.E. Simon (Eds.).
24. Singh A., Chaudhury A., Srivastava P.S., Lakshmikumaran M. Comparison of AFLP and SAMPL markers for assessment of intra-population genetic variation in Azadirachta indica A. Juss. Plant Sci. 2002, 162:17-25.
25. Singh A.P., Dwivedi S., Bharti S., Srivastava A., Singh V., Khanuja S.P.S. Phylogenetic relationships as in Ocimum revealed by RAPD markers. Euphytica 2004, 136:11-20.
26. Vieira R.F., Grayer R.J., Paton A., Simon J.E. Genetic diversity of Ocimum gratissimum L. based on volatile oil constituents, flavonoids and RAPD markers. Biochem. Syst. Ecol. 2001, 29:287-304.
27. Vieira R.F., Goldsbrough P., Simon J.E. Genetic diversity of basil (Ocimum spp.) based on RAPD markers. J. Amer. Sco. Hort. Sci. 2003, 128(1):94-99.
28. Vos P., Hogers R., Bleeker M., Reuans M., Van De Lee T., Hornes M., Friters A., Pot J., Paleman J., Kuiper M., Zabeau M. AFLP: a new technique for DNA fingerprinting. Nucleic. Acids. Res. 1995, 23(21):4407-4414.
29. Weissing K., Nybom H., Wolff K., Meyer W. DNA Fingerprinting in Plants and Fungi 1995, CRC Press, Boca Raton, Florida.
30. Yeh F.C., Yang R.C., Boyle T. POPGENE Microsoft Windows-based Freeware for Population Genetic Analysis 1999, Universityof Alberta, Edmonton, Canada, release 1.31.