메뉴 건너뛰기




Volumn 6, Issue 10, 2011, Pages

Human embryonic stem cells derived from embryos at different stages of development share similar transcription profiles

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTOME; ALKALINE PHOSPHATASE;

EID: 80054844314     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0026570     Document Type: Article
Times cited : (22)

References (43)
  • 1
    • 0023874053 scopus 로고
    • Human gene expression first occurs between the four- and eight-cell stages of preimplantation development
    • Braude P, Bolton V, Moore S, (1988) Human gene expression first occurs between the four- and eight-cell stages of preimplantation development. Nature 332: 459-461.
    • (1988) Nature , vol.332 , pp. 459-461
    • Braude, P.1    Bolton, V.2    Moore, S.3
  • 2
    • 47649088993 scopus 로고    scopus 로고
    • The four blastomeres of a 4-cell stage human embryo are able to develop individually into blastocysts with inner cell mass and trophectoderm
    • Van de Velde H, Cauffman G, Tournaye H, Devroey P, Liebaers I, (2008) The four blastomeres of a 4-cell stage human embryo are able to develop individually into blastocysts with inner cell mass and trophectoderm. Hum Reprod 23: 1742-1747.
    • (2008) Hum Reprod , vol.23 , pp. 1742-1747
    • van de Velde, H.1    Cauffman, G.2    Tournaye, H.3    Devroey, P.4    Liebaers, I.5
  • 4
    • 70350218049 scopus 로고    scopus 로고
    • Derivation of human embryonic stem cell lines from biopsied blastomeres on human feeders with minimal exposure to xenomaterials
    • Ilic D, Giritharan G, Zdravkovic T, Caceres E, Genbacev O, et al. (2009) Derivation of human embryonic stem cell lines from biopsied blastomeres on human feeders with minimal exposure to xenomaterials. Stem Cells Dev 18: 1343-1350.
    • (2009) Stem Cells Dev , vol.18 , pp. 1343-1350
    • Ilic, D.1    Giritharan, G.2    Zdravkovic, T.3    Caceres, E.4    Genbacev, O.5
  • 5
    • 70350503771 scopus 로고    scopus 로고
    • Human embryonic stem cell lines derived from single blastomeres of two 4-cell stage embryos
    • Geens M, Mateizel I, Sermon K, De Rycke M, Spits C, et al. (2009) Human embryonic stem cell lines derived from single blastomeres of two 4-cell stage embryos. Hum Reprod 24: 2709-2717.
    • (2009) Hum Reprod , vol.24 , pp. 2709-2717
    • Geens, M.1    Mateizel, I.2    Sermon, K.3    de Rycke, M.4    Spits, C.5
  • 7
    • 11144285884 scopus 로고    scopus 로고
    • DNA methylation pattern in human zygotes and developing embryos
    • Fulka H, Mrazek M, Tepla O, Fulka J Jr, (2004) DNA methylation pattern in human zygotes and developing embryos. Reproduction 128: 703-708.
    • (2004) Reproduction , vol.128 , pp. 703-708
    • Fulka, H.1    Mrazek, M.2    Tepla, O.3    Fulka Jr., J.4
  • 8
    • 77956295358 scopus 로고    scopus 로고
    • Turner S, Wong HP, Rai J, Hartshorne GM Telomere lengths in human oocytes, cleavage stage embryos and blastocysts
    • Turner S, Wong HP, Rai J, Hartshorne GM Telomere lengths in human oocytes, cleavage stage embryos and blastocysts. Mol Hum Reprod 16: 685-694.
    • Mol Hum Reprod , vol.16 , pp. 685-694
  • 9
    • 34748852543 scopus 로고    scopus 로고
    • Disruption of apical-basal polarity of human embryonic stem cells enhances hematoendothelial differentiation
    • Krtolica A, Genbacev O, Escobedo C, Zdravkovic T, Nordstrom A, et al. (2007) Disruption of apical-basal polarity of human embryonic stem cells enhances hematoendothelial differentiation. Stem Cells 25: 2215-2223.
    • (2007) Stem Cells , vol.25 , pp. 2215-2223
    • Krtolica, A.1    Genbacev, O.2    Escobedo, C.3    Zdravkovic, T.4    Nordstrom, A.5
  • 10
    • 67650567329 scopus 로고    scopus 로고
    • Early cell fate decisions of human embryonic stem cells and mouse epiblast stem cells are controlled by the same signalling pathways
    • Vallier L, Touboul T, Chng Z, Brimpari M, Hannan N, et al. (2009) Early cell fate decisions of human embryonic stem cells and mouse epiblast stem cells are controlled by the same signalling pathways. PLoS One 4: e6082.
    • (2009) PLoS One , vol.4
    • Vallier, L.1    Touboul, T.2    Chng, Z.3    Brimpari, M.4    Hannan, N.5
  • 11
    • 38649093350 scopus 로고    scopus 로고
    • Human embryonic stem cell lines generated without embryo destruction
    • Chung Y, Klimanskaya I, Becker S, Li T, Maserati M, et al. (2008) Human embryonic stem cell lines generated without embryo destruction. Cell Stem Cell 2: 113-117.
    • (2008) Cell Stem Cell , vol.2 , pp. 113-117
    • Chung, Y.1    Klimanskaya, I.2    Becker, S.3    Li, T.4    Maserati, M.5
  • 12
    • 28744458859 scopus 로고    scopus 로고
    • Bioconductor: open software development for computational biology and bioinformatics
    • Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, et al. (2004) Bioconductor: open software development for computational biology and bioinformatics. Genome Biol 5: R80.
    • (2004) Genome Biol , vol.5
    • Gentleman, R.C.1    Carey, V.J.2    Bates, D.M.3    Bolstad, B.4    Dettling, M.5
  • 13
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical bayes methods for assessing differential expression in microarray experiments
    • Smyth GK, (2004) Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 3: Article3.
    • (2004) Stat Appl Genet Mol Biol , vol.3
    • Smyth, G.K.1
  • 14
    • 0142121516 scopus 로고    scopus 로고
    • Exploration, normalization, and summaries of high density oligonucleotide array probe level data
    • Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, et al. (2003) Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4: 249-264.
    • (2003) Biostatistics , vol.4 , pp. 249-264
    • Irizarry, R.A.1    Hobbs, B.2    Collin, F.3    Beazer-Barclay, Y.D.4    Antonellis, K.J.5
  • 15
    • 0037311919 scopus 로고    scopus 로고
    • TM4: a free, open-source system for microarray data management and analysis
    • Saeed AI, Sharov V, White J, Li J, Liang W, et al. (2003) TM4: a free, open-source system for microarray data management and analysis. Biotechniques 34: 374-378.
    • (2003) Biotechniques , vol.34 , pp. 374-378
    • Saeed, A.I.1    Sharov, V.2    White, J.3    Li, J.4    Liang, W.5
  • 16
    • 0037317323 scopus 로고    scopus 로고
    • Genomic sequence and transcriptional profile of the boundary between pericentromeric satellites and genes on human chromosome arm 10p
    • Guy J, Hearn T, Crosier M, Mudge J, Viggiano L, et al. (2003) Genomic sequence and transcriptional profile of the boundary between pericentromeric satellites and genes on human chromosome arm 10p. Genome Res 13: 159-172.
    • (2003) Genome Res , vol.13 , pp. 159-172
    • Guy, J.1    Hearn, T.2    Crosier, M.3    Mudge, J.4    Viggiano, L.5
  • 17
    • 3543111496 scopus 로고    scopus 로고
    • A protein interaction framework for human mRNA degradation
    • Lehner B, Sanderson CM, (2004) A protein interaction framework for human mRNA degradation. Genome Res 14: 1315-1323.
    • (2004) Genome Res , vol.14 , pp. 1315-1323
    • Lehner, B.1    Sanderson, C.M.2
  • 19
    • 1342282945 scopus 로고    scopus 로고
    • DAMAGE, a novel alpha-dystrobrevin-associated MAGE protein in dystrophin complexes
    • Albrecht DE, Froehner SC, (2004) DAMAGE, a novel alpha-dystrobrevin-associated MAGE protein in dystrophin complexes. J Biol Chem 279: 7014-7023.
    • (2004) J Biol Chem , vol.279 , pp. 7014-7023
    • Albrecht, D.E.1    Froehner, S.C.2
  • 20
    • 67649841949 scopus 로고    scopus 로고
    • A primate subfamily of galectins expressed at the maternal-fetal interface that promote immune cell death
    • Than NG, Romero R, Goodman M, Weckle A, Xing J, et al. (2009) A primate subfamily of galectins expressed at the maternal-fetal interface that promote immune cell death. Proc Natl Acad Sci U S A 106: 9731-9736.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 9731-9736
    • Than, N.G.1    Romero, R.2    Goodman, M.3    Weckle, A.4    Xing, J.5
  • 21
    • 0037824662 scopus 로고    scopus 로고
    • Potential roles of galectins in myeloid differentiation into three different lineages
    • Abedin MJ, Kashio Y, Seki M, Nakamura K, Hirashima M, (2003) Potential roles of galectins in myeloid differentiation into three different lineages. J Leukoc Biol 73: 650-656.
    • (2003) J Leukoc Biol , vol.73 , pp. 650-656
    • Abedin, M.J.1    Kashio, Y.2    Seki, M.3    Nakamura, K.4    Hirashima, M.5
  • 22
    • 0037177882 scopus 로고    scopus 로고
    • Charcot-Leyden crystal protein (galectin-10) is not a dual function galectin with lysophospholipase activity but binds a lysophospholipase inhibitor in a novel structural fashion
    • Ackerman SJ, Liu L, Kwatia MA, Savage MP, Leonidas DD, et al. (2002) Charcot-Leyden crystal protein (galectin-10) is not a dual function galectin with lysophospholipase activity but binds a lysophospholipase inhibitor in a novel structural fashion. J Biol Chem 277: 14859-14868.
    • (2002) J Biol Chem , vol.277 , pp. 14859-14868
    • Ackerman, S.J.1    Liu, L.2    Kwatia, M.A.3    Savage, M.P.4    Leonidas, D.D.5
  • 23
    • 0029959435 scopus 로고    scopus 로고
    • The C-terminal domain of the largest subunit of RNA polymerase II interacts with a novel set of serine/arginine-rich proteins
    • Yuryev A, Patturajan M, Litingtung Y, Joshi RV, Gentile C, et al. (1996) The C-terminal domain of the largest subunit of RNA polymerase II interacts with a novel set of serine/arginine-rich proteins. Proc Natl Acad Sci U S A 93: 6975-6980.
    • (1996) Proc Natl Acad Sci U S A , vol.93 , pp. 6975-6980
    • Yuryev, A.1    Patturajan, M.2    Litingtung, Y.3    Joshi, R.V.4    Gentile, C.5
  • 24
    • 53049102663 scopus 로고    scopus 로고
    • Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the carboxyl-terminal domain of RNA polymerase II
    • Becker R, Loll B, Meinhart A, (2008) Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the carboxyl-terminal domain of RNA polymerase II. J Biol Chem 283: 22659-22669.
    • (2008) J Biol Chem , vol.283 , pp. 22659-22669
    • Becker, R.1    Loll, B.2    Meinhart, A.3
  • 25
    • 0034682827 scopus 로고    scopus 로고
    • Interactions of the low density lipoprotein receptor gene family with cytosolic adaptor and scaffold proteins suggest diverse biological functions in cellular communication and signal transduction
    • Gotthardt M, Trommsdorff M, Nevitt MF, Shelton J, Richardson JA, et al. (2000) Interactions of the low density lipoprotein receptor gene family with cytosolic adaptor and scaffold proteins suggest diverse biological functions in cellular communication and signal transduction. J Biol Chem 275: 25616-25624.
    • (2000) J Biol Chem , vol.275 , pp. 25616-25624
    • Gotthardt, M.1    Trommsdorff, M.2    Nevitt, M.F.3    Shelton, J.4    Richardson, J.A.5
  • 26
    • 0033135013 scopus 로고    scopus 로고
    • LHFP, a novel translocation partner gene of HMGIC in a lipoma, is a member of a new family of LHFP-like genes
    • Petit MM, Schoenmakers EF, Huysmans C, Geurts JM, Mandahl N, et al. (1999) LHFP, a novel translocation partner gene of HMGIC in a lipoma, is a member of a new family of LHFP-like genes. Genomics 57: 438-441.
    • (1999) Genomics , vol.57 , pp. 438-441
    • Petit, M.M.1    Schoenmakers, E.F.2    Huysmans, C.3    Geurts, J.M.4    Mandahl, N.5
  • 27
    • 77949865316 scopus 로고    scopus 로고
    • Individuals with mutations in XPNPEP3, which encodes a mitochondrial protein, develop a nephronophthisis-like nephropathy
    • O'Toole JF, Liu Y, Davis EE, Westlake CJ, Attanasio M,et al. Individuals with mutations in XPNPEP3, which encodes a mitochondrial protein, develop a nephronophthisis-like nephropathy. J Clin Invest 120: 791-802.
    • J Clin Invest , vol.120 , pp. 791-802
    • O'Toole, J.F.1    Liu, Y.2    Davis, E.E.3    Westlake, C.J.4    Attanasio, M.5
  • 28
    • 15844384861 scopus 로고    scopus 로고
    • RIG-E, a human homolog of the murine Ly-6 family, is induced by retinoic acid during the differentiation of acute promyelocytic leukemia cell
    • Mao M, Yu M, Tong JH, Ye J, Zhu J, et al. (1996) RIG-E, a human homolog of the murine Ly-6 family, is induced by retinoic acid during the differentiation of acute promyelocytic leukemia cell. Proc Natl Acad Sci U S A 93: 5910-5914.
    • (1996) Proc Natl Acad Sci U S A , vol.93 , pp. 5910-5914
    • Mao, M.1    Yu, M.2    Tong, J.H.3    Ye, J.4    Zhu, J.5
  • 29
    • 51649084083 scopus 로고    scopus 로고
    • Stem cell antigen 2: a new gene involved in the self-renewal of erythroid progenitors
    • Bresson-Mazet C, Gandrillon O, Gonin-Giraud S, (2008) Stem cell antigen 2: a new gene involved in the self-renewal of erythroid progenitors. Cell Prolif 41: 726-738.
    • (2008) Cell Prolif , vol.41 , pp. 726-738
    • Bresson-Mazet, C.1    Gandrillon, O.2    Gonin-Giraud, S.3
  • 31
    • 0034682443 scopus 로고    scopus 로고
    • Identification of eIF2Bgamma and eIF2gamma as cofactors of hepatitis C virus internal ribosome entry site-mediated translation using a functional genomics approach
    • Kruger M, Beger C, Li QX, Welch PJ, Tritz R, et al. (2000) Identification of eIF2Bgamma and eIF2gamma as cofactors of hepatitis C virus internal ribosome entry site-mediated translation using a functional genomics approach. Proc Natl Acad Sci U S A 97: 8566-8571.
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 8566-8571
    • Kruger, M.1    Beger, C.2    Li, Q.X.3    Welch, P.J.4    Tritz, R.5
  • 32
    • 34248160996 scopus 로고    scopus 로고
    • The RBCC gene RFP2 (Leu5) encodes a novel transmembrane E3 ubiquitin ligase involved in ERAD
    • Lerner M, Corcoran M, Cepeda D, Nielsen ML, Zubarev R, et al. (2007) The RBCC gene RFP2 (Leu5) encodes a novel transmembrane E3 ubiquitin ligase involved in ERAD. Mol Biol Cell 18: 1670-1682.
    • (2007) Mol Biol Cell , vol.18 , pp. 1670-1682
    • Lerner, M.1    Corcoran, M.2    Cepeda, D.3    Nielsen, M.L.4    Zubarev, R.5
  • 33
    • 0037710527 scopus 로고    scopus 로고
    • Characterization of the human UBE3B gene: structure, expression, evolution, and alternative splicing
    • Gong TW, Huang L, Warner SJ, Lomax MI, (2003) Characterization of the human UBE3B gene: structure, expression, evolution, and alternative splicing. Genomics 82: 143-152.
    • (2003) Genomics , vol.82 , pp. 143-152
    • Gong, T.W.1    Huang, L.2    Warner, S.J.3    Lomax, M.I.4
  • 34
    • 33646574284 scopus 로고    scopus 로고
    • Human QKI, a potential regulator of mRNA expression of human oligodendrocyte-related genes involved in schizophrenia
    • Aberg K, Saetre P, Jareborg N, Jazin E, (2006) Human QKI, a potential regulator of mRNA expression of human oligodendrocyte-related genes involved in schizophrenia. Proc Natl Acad Sci U S A 103: 7482-7487.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 7482-7487
    • Aberg, K.1    Saetre, P.2    Jareborg, N.3    Jazin, E.4
  • 35
    • 0031858861 scopus 로고    scopus 로고
    • Structure-function analysis of Qk1: a lethal point mutation in mouse quaking prevents homodimerization
    • Chen T, Richard S, (1998) Structure-function analysis of Qk1: a lethal point mutation in mouse quaking prevents homodimerization. Mol Cell Biol 18: 4863-4871.
    • (1998) Mol Cell Biol , vol.18 , pp. 4863-4871
    • Chen, T.1    Richard, S.2
  • 36
    • 78650340922 scopus 로고    scopus 로고
    • Structural bases of PAS domain-regulated kinase (PASK) activation in the absence of activation loop phosphorylation.
    • Kikani CK, Antonysamy SA, Bonanno JB, Romero R, Zhang FF, et al. Structural bases of PAS domain-regulated kinase (PASK) activation in the absence of activation loop phosphorylation.J Biol Chem 285: 41034-41043.
    • J Biol Chem , vol.285 , pp. 41034-41043
    • Kikani, C.K.1    Antonysamy, S.A.2    Bonanno, J.B.3    Romero, R.4    Zhang, F.F.5
  • 37
    • 0024328734 scopus 로고
    • The human Rab genes encode a family of GTP-binding proteins related to yeast YPT1 and SEC4 products involved in secretion
    • Zahraoui A, Touchot N, Chardin P, Tavitian A, (1989) The human Rab genes encode a family of GTP-binding proteins related to yeast YPT1 and SEC4 products involved in secretion. J Biol Chem 264: 12394-12401.
    • (1989) J Biol Chem , vol.264 , pp. 12394-12401
    • Zahraoui, A.1    Touchot, N.2    Chardin, P.3    Tavitian, A.4
  • 38
    • 68549133583 scopus 로고    scopus 로고
    • Mapping key features of transcriptional regulatory circuitry in embryonic stem cells
    • Cole MF, Young RA, (2008) Mapping key features of transcriptional regulatory circuitry in embryonic stem cells. Cold Spring Harb Symp Quant Biol 73: 183-193.
    • (2008) Cold Spring Harb Symp Quant Biol , vol.73 , pp. 183-193
    • Cole, M.F.1    Young, R.A.2
  • 39
    • 78650971216 scopus 로고    scopus 로고
    • Dynamic changes in the copy number of pluripotency and cell proliferation genes in human ESCs and iPSCs during reprogramming and time in culture
    • Laurent LC, Ulitsky I, Slavin I, Tran H, Schork A, et al. (2010) Dynamic changes in the copy number of pluripotency and cell proliferation genes in human ESCs and iPSCs during reprogramming and time in culture. Cell Stem Cell 8: 106-118.
    • (2010) Cell Stem Cell , vol.8 , pp. 106-118
    • Laurent, L.C.1    Ulitsky, I.2    Slavin, I.3    Tran, H.4    Schork, A.5
  • 40
    • 79551677421 scopus 로고    scopus 로고
    • Reference Maps of Human ES and iPS Cell Variation Enable High-Throughput Characterization of Pluripotent Cell Lines
    • Bock C, Kiskinis E, Verstappen G, Gu H, Boulting G, et al. (2011) Reference Maps of Human ES and iPS Cell Variation Enable High-Throughput Characterization of Pluripotent Cell Lines. Cell 144: 439-452.
    • (2011) Cell , vol.144 , pp. 439-452
    • Bock, C.1    Kiskinis, E.2    Verstappen, G.3    Gu, H.4    Boulting, G.5
  • 41
    • 40449141341 scopus 로고    scopus 로고
    • Marked differences in differentiation propensity among human embryonic stem cell lines
    • Osafune K, Caron L, Borowiak M, Martinez RJ, Fitz-Gerald CS, et al. (2008) Marked differences in differentiation propensity among human embryonic stem cell lines. Nat Biotechnol 26: 313-315.
    • (2008) Nat Biotechnol , vol.26 , pp. 313-315
    • Osafune, K.1    Caron, L.2    Borowiak, M.3    Martinez, R.J.4    Fitz-Gerald, C.S.5
  • 42
    • 77956260872 scopus 로고    scopus 로고
    • Chromatin structure and gene expression programs of human embryonic and induced pluripotent stem cells
    • Guenther MG, Frampton GM, Soldner F, Hockemeyer D, Mitalipova M, et al. (2010) Chromatin structure and gene expression programs of human embryonic and induced pluripotent stem cells. Cell Stem Cell 7: 249-257.
    • (2010) Cell Stem Cell , vol.7 , pp. 249-257
    • Guenther, M.G.1    Frampton, G.M.2    Soldner, F.3    Hockemeyer, D.4    Mitalipova, M.5
  • 43
    • 77952732489 scopus 로고    scopus 로고
    • Derivation of pre-X inactivation human embryonic stem cells under physiological oxygen concentrations
    • Lengner CJ, Gimelbrant AA, Erwin JA, Cheng AW, Guenther MG, et al. (2010) Derivation of pre-X inactivation human embryonic stem cells under physiological oxygen concentrations. Cell 141: 872-883.
    • (2010) Cell , vol.141 , pp. 872-883
    • Lengner, C.J.1    Gimelbrant, A.A.2    Erwin, J.A.3    Cheng, A.W.4    Guenther, M.G.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.