-
1
-
-
84976753721
-
A class of generalized stochastic Petri nets for the performance analysis of multiprocessor systems
-
M. Ajmone Marsan, G. Balbo, G. Conte, A class of generalized stochastic Petri nets for the performance analysis of multiprocessor systems, ACM Transactions on Computer Systems 2 (1) (1984).
-
(1984)
ACM Transactions on Computer Systems
, vol.2
, Issue.1
-
-
Ajmone Marsan, M.1
Balbo, G.2
Conte, G.3
-
2
-
-
84865741541
-
Comparison of approximate kinetics for unireactant enzymes: Michaelis-Menten against the equivalent server
-
BioPPN
-
A. Angius, G. Balbo, F. Cordero, A. Horvath, D. Manini, Comparison of approximate kinetics for unireactant enzymes: Michaelis-Menten against the equivalent server, in: Proceedings of the International Workshop on Biological Processes and Petri Nets, BioPPN, 2010.
-
(2010)
Proceedings of the International Workshop on Biological Processes and Petri Nets
-
-
Angius, A.1
Balbo, G.2
Cordero, F.3
Horvath, A.4
Manini, D.5
-
3
-
-
84993971722
-
The Great SPN tool: Recent enhancements, ACM SIGMETRICS
-
S. Baarir, M. Beccuti, D. Cerotti, M. De Pierro, S. Donatelli, G. Franceschinis, The Great SPN tool: recent enhancements, ACM SIGMETRICS, Performance Evaluation Review 36 (4) (2009) 4-9.
-
(2009)
Performance Evaluation Review
, vol.36
, Issue.4
, pp. 4-9
-
-
Baarir, S.1
Beccuti, M.2
Cerotti, D.3
De Pierro, M.4
Donatelli, S.5
Franceschinis, G.6
-
4
-
-
84944323296
-
Introduction to stochastic Petri nets
-
E. Brinksma, H. Hermanns, J.-P. Katoen (Eds.) LNCS Springer, Berlin, Germany
-
G. Balbo, Introduction to stochastic Petri nets, in: E. Brinksma, H. Hermanns, J.-P. Katoen (Eds.), Lectures on Formal Mathods and Performance Analysis, in: LNCS, vol. 2090, Springer, Berlin, Germany, 2001, pp. 1-37.
-
(2001)
Lectures on Formal Mathods and Performance Analysis
, vol.2090
, pp. 1-37
-
-
Balbo, G.1
-
5
-
-
33845196693
-
A numerical aggregation algorithm for the enzyme-catalyzed substrate conversion
-
LNCS Springer
-
H. Busch, W. Sandmann, V. Wolf, A numerical aggregation algorithm for the enzyme-catalyzed substrate conversion, in: Computational Methods in Systems Biology, in: LNCS, vol. 4210, Springer, 2006, pp. 298-311.
-
(2006)
Computational Methods in Systems Biology
, vol.4210
, pp. 298-311
-
-
Busch, H.1
Sandmann, W.2
Wolf, V.3
-
6
-
-
33845224593
-
Analysis of signalling pathways using continuous time Markov chains
-
M. Calder, V. Vyshemirsky, D. Gilbert, R. Orton, Analysis of signalling pathways using continuous time Markov chains, Transactions on Computational Systems Biology VI 4 (2006) 44-67.
-
(2006)
Transactions on Computational Systems Biology
, vol.6
, Issue.4
, pp. 44-67
-
-
Calder, M.1
Vyshemirsky, V.2
Gilbert, D.3
Orton, R.4
-
7
-
-
0016427060
-
Parametric analysis of queueing networks
-
K.M. Chandy, U. Herzog, L.S. Woo, Parametric analysis of queueing networks, IBM Journal of R. & D. 19 (1) (1975) 36-42.
-
(1975)
IBM Journal of R. & D.
, vol.19
, Issue.1
, pp. 36-42
-
-
Chandy, K.M.1
Herzog, U.2
Woo, L.S.3
-
8
-
-
65649102679
-
Recent developments in parameter estimation and structure identification of biochemical and genomic systems
-
I.-C. Chou, E. O. Voit, Recent developments in parameter estimation and structure identification of biochemical and genomic systems, Mathematical Biosciences 219 (2) (2009) 57-83.
-
(2009)
Mathematical Biosciences
, vol.219
, Issue.2
, pp. 57-83
-
-
Chou, I.-C.1
Voit, E.O.2
-
9
-
-
33747340770
-
The adaptor protein Gab1 couples the stimulation of vascular endothelial growth factor receptor-2 to the activation of phosphoinositide 3-kinase
-
M. Dance, A. Montagner, A. Yart, B. Masri, Y. Audigier, B. Perret, J. Salles, P. Raynal, The adaptor protein Gab1 couples the stimulation of vascular endothelial growth factor receptor-2 to the activation of phosphoinositide 3-kinase, Journal of Biological Chemestry 281 (2006) 23285-23295.
-
(2006)
Journal of Biological Chemestry
, vol.281
, pp. 23285-23295
-
-
Dance, M.1
Montagner, A.2
Yart, A.3
Masri, B.4
Audigier, Y.5
Perret, B.6
Salles, J.7
Raynal, P.8
-
10
-
-
0018012356
-
The operational analysis of queueing network models
-
P.J. Denning, J.P. Buzen, The operational analysis of queueing network models, ACM Computing Surveys 10 (3) (1978) 225-261.
-
(1978)
ACM Computing Surveys
, vol.10
, Issue.3
, pp. 225-261
-
-
Denning, P.J.1
Buzen, J.P.2
-
12
-
-
0032515047
-
Vascular endothelial growth factor regulates endothelial cell survival through the phosphatidylinositol 3'-kinase/Akt signal transduction pathway. requirement for Flk-1/KDR activation
-
H. Gerber, A. McMurtrey, J. Kowalski, M. Yan, B. Keyt, V. Dixit, N. Ferrara, Vascular endothelial growth factor regulates endothelial cell survival through the phosphatidylinositol 3'-kinase/Akt signal transduction pathway. requirement for Flk-1/KDR activation, Journal of Biological Chemestry 273 (1998) 30336-30343.
-
(1998)
Journal of Biological Chemestry
, vol.273
, pp. 30336-30343
-
-
Gerber, H.1
McMurtrey, A.2
Kowalski, J.3
Yan, M.4
Keyt, B.5
Dixit, V.6
Ferrara, N.7
-
13
-
-
44049109914
-
A rigorous derivation of the master chemical equation
-
D. Gillespie, A rigorous derivation of the master chemical equation, Physica 188 (1992) 404-425.
-
(1992)
Physica
, vol.188
, pp. 404-425
-
-
Gillespie, D.1
-
14
-
-
0032499741
-
Quantitative modelingofstochasticsystemsinmolecularbiologybyusing stochasticPetri nets
-
P. Goss, J. Pecoud, Quantitative modelingofstochasticsystemsinmolecularbiologybyusing stochasticPetri nets, Proceedings of the National Academy of Sciences 95 (12) (1998) 6750-6755.
-
(1998)
Proceedings of the National Academy of Sciences
, vol.95
, Issue.12
, pp. 6750-6755
-
-
Goss, P.1
Pecoud, J.2
-
15
-
-
41549107955
-
Modularizationofbiochemical networks based on classification of Petri net t-invariants
-
E. Grafahrend-Belau, F. Schreiber, M. Heiner, A. Sackmann, B. Junker, S. Grunwald, A. Speer, K. Winder, I. Koch, Modularizationofbiochemical networks based on classification of Petri net t-invariants, BMC Bioinformatics 9 (2008).
-
(2008)
BMC Bioinformatics
, vol.9
-
-
Grafahrend-Belau, E.1
Schreiber, F.2
Heiner, M.3
Sackmann, A.4
Junker, B.5
Grunwald, S.6
Speer, A.7
Winder, K.8
Koch, I.9
-
16
-
-
33845224003
-
-
Springer
-
J. Heath, M. Kwiatkowska, G. Norman, D. Parker, O. Tymchyshyn, Probabilistic Model Checking of Complex Biological Pathways, Springer, 2006, pp. 32-47.
-
(2006)
Probabilistic Model Checking of Complex Biological Pathways
, pp. 32-47
-
-
Heath, J.1
Kwiatkowska, M.2
Norman, G.3
Parker, D.4
Tymchyshyn, O.5
-
17
-
-
45749112203
-
Petri nets for systems and synthetic biology
-
LNCS, Springer, Bertinoro, Italy
-
M. Heiner, D. Gilbert, R. Donaldson, Petri nets for systems and synthetic biology, in: 8th International School on Formal Methods for the Design of Computer, Communication, and Software Systems, in: LNCS, Springer, Bertinoro, Italy, 2008, pp. 215-264.
-
(2008)
8th International School on Formal Methods for the Design of Computer, Communication, and Software Systems
, pp. 215-264
-
-
Heiner, M.1
Gilbert, D.2
Donaldson, R.3
-
18
-
-
3042699469
-
Model validation of biological pathways using Petri nets demonstrated for apoptosis
-
M. Heiner, I. Koch, J. Will, Model validation of biological pathways using Petri nets demonstrated for apoptosis, BioSystems 75 (2004) 10-28.
-
(2004)
BioSystems
, vol.75
, pp. 10-28
-
-
Heiner, M.1
Koch, I.2
Will, J.3
-
21
-
-
0032229446
-
Quantitative modeling of biochemical networks
-
R. Hofestädt, S. Thelen, Quantitative modeling of biochemical networks, In Silico Biology 1 (6) (1998).
-
(1998)
Silico Biology
, vol.1
, Issue.6
-
-
Hofestädt, R.1
Thelen, S.2
-
22
-
-
0001455869
-
The relationship between stochastic and deterministic models for chemical reactions
-
T.G. Kurtz, The relationship between stochastic and deterministic models for chemical reactions, Journal of Chemical Physics57 (7) (1972) 2976-2978.
-
(1972)
Journal of Chemical Physics
, vol.57
, Issue.7
, pp. 2976-2978
-
-
Kurtz, T.G.1
-
23
-
-
34247221517
-
The scaffolding adapter Gab1 mediates Vascular Endothelial Growth factor signaling andis required for endothelial cell migration and capillary formation
-
M. Laramée, C. Chabot, M. Cloutier, R. Stenne, M. Holgado-Madruga, A. Wong, I. Royal, The scaffolding adapter Gab1 mediates Vascular Endothelial Growth factor signaling andis required for endothelial cell migration and capillary formation, Journal of Biological Chemestry 282 (2007) 7758-7769.
-
(2007)
Journal of Biological Chemestry
, vol.282
, pp. 7758-7769
-
-
Laramée, M.1
Chabot, C.2
Cloutier, M.3
Stenne, R.4
Holgado-Madruga, M.5
Wong, A.6
Royal, I.7
-
24
-
-
85030573952
-
-
Webpage
-
MEDDLY, 2010. Webpage. http://sourceforge.net/projects/meddly.
-
(2010)
MEDDLY
-
-
-
25
-
-
84865741540
-
Advanced algebraic techniques
-
W. Brawer, W. Reisig, G. Rozenberg (Eds.) LNCS Springer Verlag, Bad Honnef, West Germany
-
G. Memmi, J. Vautherin, Advanced algebraic techniques, in: W. Brawer, W. Reisig, G. Rozenberg (Eds.), Advances on Petri Nets '86-Part I, in: LNCS, vol. 254, Springer Verlag, Bad Honnef, West Germany, 1987.
-
(1987)
Advances on Petri Nets '86-part I
, vol.254
-
-
Memmi, G.1
Vautherin, J.2
-
26
-
-
77955380744
-
Greatspn enhanced with decision diagram data structures
-
LNCS Springer, Braga, Portugal
-
A. Miner, J. Babar, M. Beccuti, S. Donatelli, Greatspn enhanced with decision diagram data structures, in: Proc. 31-st Int. Conf. Applications and Theory of Petri Nets ICATPN 2010, in: LNCS, vol. 6128, Springer, Braga, Portugal, 2010, pp. 308-317.
-
(2010)
Proc. 31-st Int. Conf. Applications and Theory of Petri Nets ICATPN 2010
, vol.6128
, pp. 308-317
-
-
Miner, A.1
Babar, J.2
Beccuti, M.3
Donatelli, S.4
-
27
-
-
0020175425
-
Performance analysis using stochastic Petri nets
-
M.K. Molloy, Performance analysis using stochastic Petri nets, IEEE Transaction on Computers 31 (9) (1982) 913-917.
-
(1982)
IEEE Transaction on Computers
, vol.31
, Issue.9
, pp. 913-917
-
-
Molloy, M.K.1
-
28
-
-
0024645936
-
Petri nets: Properties, analysis, and applications
-
T. Murata, Petri nets: properties, analysis, and applications, Proceedings of the IEEE 77 (4) (1989) 541-580.
-
(1989)
Proceedings of the IEEE
, vol.77
, Issue.4
, pp. 541-580
-
-
Murata, T.1
-
29
-
-
70349309911
-
On the use of stochastic Petri nets in the analysis of signal transduction pathways for angiogenesis process
-
CMSB 2009, in: Lecture Notes in Bioinformatics Bologna, Italy
-
L. Napione, D. Manini, F. Cordero, A. Horváth, A. Picco, M.D. Pierro, S. Pavan, M. Sereno, A. Veglio, F. Bussolino, G. Balbo, On the use of stochastic Petri nets in the analysis of signal transduction pathways for angiogenesis process, in: Proc. of The 7th Conference on Computational Methods in Systems Biology, CMSB 2009, in: Lecture Notes in Bioinformatics, vol. 5688, Bologna, Italy, 2009, 281-295.
-
(2009)
Proc. of the 7th Conference on Computational Methods in Systems Biology
, vol.5688
, pp. 281-295
-
-
Napione, L.1
Manini, D.2
Cordero, F.3
Horváth, A.4
Picco, A.5
Pierro, M.D.6
Pavan, S.7
Sereno, M.8
Veglio, A.9
Bussolino, F.10
Balbo, G.11
-
31
-
-
33646107369
-
Vegf receptor signalingin control of vascular function
-
A. Olsson, A. Dimberg, J. Kreuger, L. Claesson-Welsh, Vegf receptor signalingin control of vascular function, Nature Reviews Molecular Cell Biology 7 (5) (2006) 359-371.
-
(2006)
Nature Reviews Molecular Cell Biology
, vol.7
, Issue.5
, pp. 359-371
-
-
Olsson, A.1
Dimberg, A.2
Kreuger, J.3
Claesson-Welsh, L.4
-
32
-
-
0027902978
-
Petri net representation in metabolic pathways
-
V. Reddy, M. Mavrovouniotis, M. Liebman, Petri net representation in metabolic pathways, in: Proc. Int. Conf. Intelligent Systems for Molecular Biology, 1993, pp. 328-336.
-
(1993)
Proc. Int. Conf. Intelligent Systems for Molecular Biology
, pp. 328-336
-
-
Reddy, V.1
Mavrovouniotis, M.2
Liebman, M.3
-
34
-
-
1842474510
-
Conservation analysis in biochemical networks: Computational issues for software writers
-
H. Sauro, B. Ingalls, Conservation analysis in biochemical networks: computational issues for software writers, Biophysical Chemistry 109 (1) (2004) 1-15.
-
(2004)
Biophysical Chemistry
, vol.109
, Issue.1
, pp. 1-15
-
-
Sauro, H.1
Ingalls, B.2
-
36
-
-
84884087337
-
-
Princeton University Press (Chapter 15)
-
W.J. Stewart, Probability, Markov Chains, Queues, and Simulation: The Mathematical Basis of Performance Modeling, Princeton University Press, 2009 (Chapter 15).
-
(2009)
Probability, Markov Chains, Queues, and Simulation: The Mathematical Basis of Performance Modeling
-
-
Stewart, W.J.1
-
37
-
-
0033118228
-
VEGF activates protein kinase C-dependent, but Ras-independent Raf-MEK-MAP kinase pathway for DNA synthesis in primary endothelial cells
-
T. Takahashi, H. Ueno, M. Shibuya, VEGF activates protein kinase C-dependent, but Ras-independent Raf-MEK-MAP kinase pathway for DNA synthesis in primary endothelial cells, Oncogene 18 (1999) 2221-2230.
-
(1999)
Oncogene
, vol.18
, pp. 2221-2230
-
-
Takahashi, T.1
Ueno, H.2
Shibuya, M.3
-
38
-
-
0344395658
-
Michaelis-Menten kinetics at high enzyme concentrations
-
A.R. Tzafriri, Michaelis-Menten kinetics at high enzyme concentrations, Bulletin of Mathematical Biology 65 (2003) 1111-1129.
-
(2003)
Bulletin of Mathematical Biology
, vol.65
, pp. 1111-1129
-
-
Tzafriri, A.R.1
|