Evaluation of glyceraldehyde-3-phosphate, prolylpeptidyl isomerase A, and a set of stably expressed genes as reference mRNAs in urate crystal inflammation

BMC Research Notes

Volumn 4, Issue , 2011, Pages

  Della Beffa, Cristina ^a   Klawonn, Frank ^a,b   Menetski, Joseph P ^c   Schumacher, H Ralph ^d,e   Pessler, Frank ^a,f  

^a HELMHOLTZ CENTRE FOR INFECTION RESEARCH   (Germany)

^b OSTFALIA UNIVERSITY OF APPLIED SCIENCES   (Germany)

^c MERCK RESEARCH LABORATORIES   (United States)

^d UNIVERSITY OF PENNSYLVANIA   (United States)

^e VETERANS AFFAIRS MEDICAL CENTER   (United States)

^f DRESDEN UNIVERSITY OF TECHNOLOGY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

MURINAE;

EID: 80054805682     PISSN: None     EISSN: 17560500     Source Type: Journal    
DOI: 10.1186/1756-0500-4-443     Document Type: Article

References (29)

1. Control selection for RNA quantitation. Suzuki T, Higgins PJ, Crawford DR, Biotechniques 2000 29 332 337 10948434 (Pubitemid 30658285)
2. Absence of GAPDH regulation in tumor-cells of different origin under hypoxic conditions in-vitro. Said HM, Polat B, Hagemann C, Anacker J, Flentje M, Vordermark D, BMC Res Notes 2009 2 8 10.1186/1756-0500-2-8 19144146
3. Instability of standard PCR reference genes in adipose-derived stem cells during propagation, differentiation and hypoxic exposure. Fink T, Lund P, Pilgaard L, Rasmussen JG, Duroux M, Zachar V, BMC Mol Biol 2008 9 98 10.1186/1471-2199-9-98 18976469
4. Direct comparison of GAPDH, beta-actin, cyclophilin, and 28S rRNA as internal standards for quantifying RNA levels under hypoxia. Zhong H, Simons JW, Biochem Biophys Res Commun 1999 259 523 526 10.1006/bbrc.1999.0815 10364451 (Pubitemid 29335566)
5. Identification of an oxygen responsive enhancer element in the glyceraldehyde-3-phosphate dehydrogenase gene. Graven KK, Yu Q, Pan D, Roncarati JS, Farber HW, Biochim Biophys Acta 1999 1447 208 218 10542317 (Pubitemid 29494992)
6. Up-regulation of glyceraldehyde-3-phosphate dehydrogenase gene expression by HIF-1 activity depending on Sp1 in hypoxic breast cancer cells. Higashimura Y, Nakajima Y, Yamaji R, Harada N, Shibasaki F, Nakano Y, Inui H, Arch Biochem Biophys 2011 509 1 8 10.1016/j.abb.2011.02.011 21338575
7. Hypoxia and inflammation. Eltzschig HK, Carmeliet P, N Engl J Med 2011 364 656 665 10.1056/NEJMra0910283 21323543
8. Hypoxia-inducible factor 1 as one of the "signaling drivers" of Toll-like receptor-dependent and allergic inflammation. Sumbayev VV, Nicholas SA, Arch Immunol Ther Exp (Warsz) 2010 58 287 294 10.1007/s00005-010-0083-0
9. Synovial tissue hypoxia and inflammation in vivo. Ng CT, Biniecka M, Kennedy A, McCormick J, Fitzgerald O, Bresnihan B, Buggy D, Taylor CT, O'Sullivan J, Fearon U, Veale DJ, Ann Rheum Dis 2010 69 1389 1395 10.1136/ard.2009.119776 20439288
10. The involvement of hypoxia-inducible factor 1 alpha in Toll-like receptor 7/8-mediated inflammatory response. Nicholas SA, Sumbayev VV, Cell Res 2009 19 973 983 10.1038/cr.2009.44 19381167
11. Hypoxia inducible factor-1-alpha (HIF-1alpha) is related to both angiogenesis and inflammation in rheumatoid arthritis. Brouwer E, Gouw AS, Posthumus MD, van Leeuwen MA, Boerboom AL, Bijzet J, Bos R, Limburg PC, Kallenberg CG, Westra J, Clin Exp Rheumatol 2009 27 945 951 20149310
12. Identification of endogenous control genes for normalisation of real-time quantitative PCR data in colorectal cancer. Kheirelseid EA, Chang KH, Newell J, Kerin MJ, Miller N, BMC Mol Biol 2010 11 12 10.1186/1471-2199-11-12 20122155
13. Evaluation and validation of candidate endogenous control genes for real-time quantitative PCR studies of breast cancer. McNeill RE, Miller N, Kerin MJ, BMC Mol Biol 2007 8 107 10.1186/1471-2199-8-107 18042273
14. Cyclophilin A may contribute to the inflammatory processes in rheumatoid arthritis through induction of matrix degrading enzymes and inflammatory cytokines from macrophages. Kim H, Kim WJ, Jeon ST, Koh EM, Cha HS, Ahn KS, Lee WH, Clin Immunol 2005 116 217 224 10.1016/j.clim.2005.05.004 15993649 (Pubitemid 41112725)
15. The formation of a structure with the features of synovial lining by subcutaneous injection of air: an in vivo tissue culture system. Edwards JC, Sedgwick AD, Willoughby DA, J Pathol 1981 134 147 156 10.1002/path.1711340205 7019400 (Pubitemid 11065839)
16. Identification of novel monosodium urate crystal regulated mRNAs by transcript profiling of dissected murine air pouch membranes. Pessler F, Mayer CT, Jung SM, Behrens EM, Dai L, Menetski JP, Schumacher HR, Arthritis Res Ther 2008 10 64 10.1186/ar2435 18522745 (Pubitemid 352006130)
17. Reduction of urate crystal-induced inflammation by root extracts from traditional oriental medicinal plants: elevation of prostaglandin D2 levels. Jung SM, Schumacher HR, Kim H, Kim M, Lee SH, Pessler F, Arthritis Res Ther 2007 9 64 10.1186/ar2222 17612394 (Pubitemid 350041673)
18. A comparison of the duration of local anti-inflammatory effect of several adrenocorticosteroid esters - a bioassay technique. McCarty DJ Jr, Faires JS, Curr Ther Res Clin Exp 1963 5 284 290 13932060
19. Descriptive Statistics. Berthold Michael R, Christian Borgelt, Frank Höppner, Klawonn F, Guide to Intelligent Data Analysis: How to Intelligently Make Sense of Real Data Springer 1 2010 315
20. Hoaglin DC, Understanding Robust and Exploratory Data Analysis John Wiley & Sons 1983
21. qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data. Hellemans J, Mortier G, De Paepe A, Speleman F, Vandesompele J, Genome Biol 2007 8 19 10.1186/gb-2007-8-2-r19 17291332 (Pubitemid 351851037)
22. Mechanisms of uric acid crystal-mediated autoinflammation. Martinon F, Immunol Rev 2010 233 218 232 10.1111/j.0105-2896.2009.00860.x 20193002
23. Monosodium urate monohydrate crystal-induced inflammation in vivo: quantitative histomorphometric analysis of cellular events. Schiltz C, Lioté F, Prudhommeaux F, Meunier A, Champy R, Callebert J, Bardin T, Arthritis Rheum 2002 46 1643 1650 10.1002/art.10326 12115197 (Pubitemid 34620213)
24. HIF-1alpha is up-regulated in activated mast cells by a process that involves calcineurin and NFAT. Walczak-Drzewiecka A, Ratajewski M, Wagner W, Dastych J, J Immunol 2008 181 1665 1672 18641302
25. DAD1, the defender against apoptotic cell death, is a subunit of the mammalian oligosaccharyltransferase. Kelleher DJ, Gilmore R, Proc Natl Acad Sci USA 1997 94 4994 4999 10.1073/pnas.94.10.4994 9144178 (Pubitemid 27214724)
26. The inhibition of spontaneous and tumor necrosis factor-alpha induced neutrophil apoptosis by crystals of calcium pyrophosphate dihydrate and monosodium urate monohydrate. Tudan C, Fong D, Duronio V, Burt HM, Jackson JK, J Rheumatol 2000 27 2463 2472 11036845
27. HMGB1: roles in base excision repair and related function. Liu Y, Prasad R, Wilson SH, Biochim Biophys Acta 2010 1799 119 130 20123074
28. HMGB1 release by inflammasomes. Vande Walle L, Kanneganti TD, Lamkanfi M, Virulence 2011 2 162 165 10.4161/viru.2.2.15480 21422809
29. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, De Paepe A, Speleman F, Genome Biol 2002 3 ESEARCH0034 12184808