-
1
-
-
34848911647
-
DNA methylation: The nuts and bolts of repression
-
Miranda, T. B., and Jones, P. A. (2007) DNA methylation: the nuts and bolts of repression, J Cell Physiol 213, 384–390.
-
(2007)
J Cell Physiol
, vol.213
, pp. 384-390
-
-
Miranda, T.B.1
Jones, P.A.2
-
2
-
-
0037007175
-
Beyond Watson and Crick: DNA methylation and molecular enzymology of DNA methyltransferases
-
Jeltsch, A. (2002) Beyond Watson and Crick: DNA methylation and molecular enzymology of DNA methyltransferases, Chembiochem 3, 274–293.
-
(2002)
Chembiochem
, vol.3
, pp. 274-293
-
-
Jeltsch, A.1
-
3
-
-
9744251005
-
Biochemistry and biology of mammalian DNA methyltransferases
-
Hermann, A., Gowher, H., and Jeltsch, A. (2004) Biochemistry and biology of mammalian DNA methyltransferases, Cell Mol Life Sci 61, 2571–2587.
-
(2004)
Cell Mol Life Sci
, vol.61
, pp. 2571-2587
-
-
Hermann, A.1
Gowher, H.2
Jeltsch, A.3
-
4
-
-
34250825379
-
Application of DNA methyltransferases in targeted DNA methylation
-
Jeltsch, A., Jurkowska, R. Z., Jurkowski, T. P., Liebert, K., Rathert, P., and Schlickenrieder, M. (2007) Application of DNA methyltransferases in targeted DNA methylation, Appl Microbiol Biotechnol 75, 1233–1240.
-
(2007)
Appl Microbiol Biotechnol
, vol.75
, pp. 1233-1240
-
-
Jeltsch, A.1
Jurkowska, R.Z.2
Jurkowski, T.P.3
Liebert, K.4
Rathert, P.5
Schlickenrieder, M.6
-
5
-
-
15744402299
-
Dam methylation: Coordinating cellular processes
-
Lobner-Olesen, A., Skovgaard, O., and Marinus, M. G. (2005) Dam methylation: coordinating cellular processes, Curr Opin Microbiol 8, 154–160.
-
(2005)
Curr Opin Microbiol
, vol.8
, pp. 154-160
-
-
Lobner-Olesen, A.1
Skovgaard, O.2
Marinus, M.G.3
-
6
-
-
85139004269
-
DNA Methylation, in The Chemical Biology of Nucleic Acids (Mayer, G., Ed.), pp 307–322
-
Jeltsch, A., and Jurkowska, R. Z. (2010) DNA Methylation, in The Chemical Biology of Nucleic Acids (Mayer, G., Ed.), pp 307–322, Wiley-VCH.
-
(2010)
Wiley-Vch
-
-
Jeltsch, A.1
Jurkowska, R.Z.2
-
7
-
-
22844457491
-
DNA methylation and human disease
-
Robertson, K. D. (2005) DNA methylation and human disease, Nat Rev Genet 6, 597–610.
-
(2005)
Nat Rev Genet
, vol.6
, pp. 597-610
-
-
Robertson, K.D.1
-
8
-
-
33847065486
-
The epigenomics of cancer
-
Jones, P. A., and Baylin, S. B. (2007) The epigenomics of cancer, Cell 128, 683–692.
-
(2007)
Cell
, vol.128
, pp. 683-692
-
-
Jones, P.A.1
Baylin, S.B.2
-
9
-
-
1042278765
-
The history of cancer epigenetics
-
Feinberg, A. P., and Tycko, B. (2004) The history of cancer epigenetics, Nat Rev Cancer 4, 143–153.
-
(2004)
Nat Rev Cancer
, vol.4
, pp. 143-153
-
-
Feinberg, A.P.1
Tycko, B.2
-
10
-
-
74049141478
-
Epigenetics in cancer
-
Sharma, S., Kelly, T. K., and Jones, P. A. (2010) Epigenetics in cancer, Carcinogenesis 31, 27–36.
-
(2010)
Carcinogenesis
, vol.31
, pp. 27-36
-
-
Sharma, S.1
Kelly, T.K.2
Jones, P.A.3
-
11
-
-
0029163078
-
Structure and function of DNA methyltransferases
-
Cheng, X. (1995) Structure and function of DNA methyltransferases, Annu Rev Biophys Biomol Struct 24, 293–318.
-
(1995)
Annu Rev Biophys Biomol Struct
, vol.24
, pp. 293-318
-
-
Cheng, X.1
-
12
-
-
0032585866
-
DNA methylation analysis: A review of current methodologies
-
Oakeley, E. J. (1999) DNA methylation analysis: a review of current methodologies, Pharmacol Ther 84, 389–400.
-
(1999)
Pharmacol Ther
, vol.84
, pp. 389-400
-
-
Oakeley, E.J.1
-
13
-
-
0036753290
-
DNA methylation: A profile of methods and applications
-
Fraga, M. F., and Esteller, M. (2002) DNA methylation: a profile of methods and applications, Biotechniques 33, 632, 634, 636–649.
-
(2002)
Biotechniques
, vol.33
, pp. 636-649
-
-
Fraga, M.F.1
Esteller, M.2
-
14
-
-
0017841507
-
Use of restriction enzymes to study eukaryotic DNA methylation
-
Bird, A. P., and Southern, E. M. (1978) Use of restriction enzymes to study eukaryotic DNA methylation: I. The methylation pattern in ribosomal DNA from Xenopus laevis, J Mol Biol 118, 27–47.
-
(1978)
I. the Methylation Pattern in Ribosomal DNA from Xenopus Laevis, J Mol Biol
, vol.118
, pp. 27-47
-
-
Bird, A.P.1
Southern, E.M.2
-
16
-
-
0018785482
-
Methylation of mouse liver DNA studied by means of the restriction enzymes msp I and hpa II
-
Singer, J., Roberts-Ems, J., and Riggs, A. D. (1979) Methylation of mouse liver DNA studied by means of the restriction enzymes msp I and hpa II, Science 203, 1019–1021.
-
(1979)
Science
, vol.203
, pp. 1019-1021
-
-
Singer, J.1
Roberts-Ems, J.2
Riggs, A.D.3
-
17
-
-
0026546877
-
A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands
-
Frommer, M., McDonald, L. E., Millar, D. S., Collis, C. M., Watt, F., Grigg, G. W., Molloy, P. L., and Paul, C. L. (1992) A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands, Proc Natl Acad Sci U S A 89, 1827–1831.
-
(1992)
Proc Natl Acad Sci U S A
, vol.89
, pp. 1827-1831
-
-
Frommer, M.1
McDonald, L.E.2
Millar, D.S.3
Collis, C.M.4
Watt, F.5
Grigg, G.W.6
Molloy, P.L.7
Paul, C.L.8
-
18
-
-
0028096611
-
High sensitivity mapping of methylated cytosines
-
Clark, S. J., Harrison, J., Paul, C. L., and Frommer, M. (1994) High sensitivity mapping of methylated cytosines, Nucleic Acids Res 22, 2990–2997.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 2990-2997
-
-
Clark, S.J.1
Harrison, J.2
Paul, C.L.3
Frommer, M.4
-
19
-
-
0019202657
-
Quantitative reversed-phase high performance liquid chromatographic determination of major and modified deoxyribonucleosides in DNA
-
Kuo, K. C., McCune, R. A., Gehrke, C. W., Midgett, R., and Ehrlich, M. (1980) Quantitative reversed-phase high performance liquid chromatographic determination of major and modified deoxyribonucleosides in DNA, Nucleic Acids Res 8, 4763–4776.
-
(1980)
Nucleic Acids Res
, vol.8
, pp. 4763-4776
-
-
Kuo, K.C.1
McCune, R.A.2
Gehrke, C.W.3
Midgett, R.4
Ehrlich, M.5
-
20
-
-
0021194159
-
Quantitative reversed-phase high-performance liquid chromatography of major and modified nucleosides in DNA
-
Gehrke, C. W., McCune, R. A., Gama-Sosa, M. A., Ehrlich, M., and Kuo, K. C. (1984) Quantitative reversed-phase high-performance liquid chromatography of major and modified nucleosides in DNA, J Chromatogr 301, 199–219.
-
(1984)
J Chromatogr
, vol.301
, pp. 199-219
-
-
Gehrke, C.W.1
McCune, R.A.2
Gama-Sosa, M.A.3
Ehrlich, M.4
Kuo, K.C.5
-
21
-
-
0021055250
-
Quantitative determination of 5-methylcytosine in DNA by reverse-phase high-performance liquid chromatography
-
Eick, D., Fritz, H. J., and Doerfler, W. (1983) Quantitative determination of 5-methylcytosine in DNA by reverse-phase high-performance liquid chromatography, Anal Biochem 135, 165–171.
-
(1983)
Anal Biochem
, vol.135
, pp. 165-171
-
-
Eick, D.1
Fritz, H.J.2
Doerfler, W.3
-
22
-
-
0017730133
-
EcoRI methylase. Physical and catalytic properties of the homogeneous enzyme
-
Rubin, R. A., and Modrich, P. (1977) EcoRI methylase. Physical and catalytic properties of the homogeneous enzyme, J Biol Chem 252, 7265–7272.
-
(1977)
J Biol Chem
, vol.252
, pp. 7265-7272
-
-
Rubin, R.A.1
Modrich, P.2
-
23
-
-
0022404732
-
DNA methyltransferases: Activity minigel analysis and determination with DNA covalently bound to a solid matrix
-
Hubscher, U., Pedrali-Noy, G., Knust-Kron, B., Doerfler, W., and Spadari, S. (1985) DNA methyltransferases: activity minigel analysis and determination with DNA covalently bound to a solid matrix, Anal Biochem 150, 442–448.
-
(1985)
Anal Biochem
, vol.150
, pp. 442-448
-
-
Hubscher, U.1
Pedrali-Noy, G.2
Knust-Kron, B.3
Doerfler, W.4
Spadari, S.5
-
24
-
-
0032488961
-
Kinetics of methylation and binding of DNA by the EcoRV adenine-N6 methyltransferase
-
Jeltsch, A., Friedrich, T., and Roth, M. (1998) Kinetics of methylation and binding of DNA by the EcoRV adenine-N6 methyltransferase, J Mol Biol 275, 747–758.
-
(1998)
J Mol Biol
, vol.275
, pp. 747-758
-
-
Jeltsch, A.1
Friedrich, T.2
Roth, M.3
-
25
-
-
0034112434
-
Biotin-avidin microplate assay for the quantitative analysis of enzymatic methylation of DNA by DNA methyltransferases
-
Roth, M., and Jeltsch, A. (2000) Biotin-avidin microplate assay for the quantitative analysis of enzymatic methylation of DNA by DNA methyltransferases, Biol Chem 381, 269–272.
-
(2000)
Biol Chem
, vol.381
, pp. 269-272
-
-
Roth, M.1
Jeltsch, A.2
-
26
-
-
40549138467
-
Detection and quantitation of the activity of DNA methyltransferases using a biotin/avidin microplate assay
-
Liebert, K., and Jeltsch, A. (2008) Detection and quantitation of the activity of DNA methyltransferases using a biotin/avidin microplate assay, Methods Mol Biol 418, 149–156.
-
(2008)
Methods Mol Biol
, vol.418
, pp. 149-156
-
-
Liebert, K.1
Jeltsch, A.2
-
27
-
-
0035407651
-
Bisulfite genomic sequencing: Systematic investigation of critical experimental parameters
-
Grunau, C., Clark, S. J., and Rosenthal, A. (2001) Bisulfite genomic sequencing: systematic investigation of critical experimental parameters, Nucleic Acids Res 29, E65-65.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. E65-E65
-
-
Grunau, C.1
Clark, S.J.2
Rosenthal, A.3
-
28
-
-
61449515589
-
DNA methylation analysis by bisulfite conversion, cloning
-
Zhang, Y., Rohde, C., Tierling, S., Stamerjohanns, H., Reinhardt, R., Walter, J., and Jeltsch, A. (2009) DNA methylation analysis by bisulfite conversion, cloning, and sequencing of individual clones, Methods Mol Biol 507, 177–187.
-
(2009)
And Sequencing of Individual Clones, Methods Mol Biol
, vol.507
, pp. 177-187
-
-
Zhang, Y.1
Rohde, C.2
Tierling, S.3
Stamerjohanns, H.4
Reinhardt, R.5
Walter, J.6
Jeltsch, A.7
-
29
-
-
9144228185
-
Hairpin-bisulfite PCR: Assessing epigenetic methylation patterns on complementary strands of individual DNA molecules
-
Laird, C. D., Pleasant, N. D., Clark, A. D., Sneeden, J. L., Hassan, K. M., Manley, N. C., Vary, J. C., Jr., Morgan, T., Hansen, R. S., and Stoger, R. (2004) Hairpin-bisulfite PCR: assessing epigenetic methylation patterns on complementary strands of individual DNA molecules, Proc Natl Acad Sci U S A 101, 204–209.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 204-209
-
-
Laird, C.D.1
Pleasant, N.D.2
Clark, A.D.3
Sneeden, J.L.4
Hassan, K.M.5
Manley, N.C.6
Vary, J.C.7
Morgan, T.8
Hansen, R.S.9
Stoger, R.10
-
30
-
-
57149094671
-
Formation of nucleo-protein filaments by mammalian DNA methyltransferase Dnmt3a in complex with regulator Dnmt3L
-
Jurkowska, R. Z., Anspach, N., Urbanke, C., Jia, D., Reinhardt, R., Nellen, W., Cheng, X., and Jeltsch, A. (2008) Formation of nucleo-protein filaments by mammalian DNA methyltransferase Dnmt3a in complex with regulator Dnmt3L, Nucleic Acids Res 36, 6656–6663.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 6656-6663
-
-
Jurkowska, R.Z.1
Anspach, N.2
Urbanke, C.3
Jia, D.4
Reinhardt, R.5
Nellen, W.6
Cheng, X.7
Jeltsch, A.8
-
31
-
-
0033003760
-
A Simple Statistical Parameter for Use in Evaluation and Validation of High Throughput Screening Assays
-
Zhang, J. H., Chung, T. D., and Oldenburg, K. R. (1999) A Simple Statistical Parameter for Use in Evaluation and Validation of High Throughput Screening Assays, J Biomol Screen 4, 67–73.
-
(1999)
J Biomol Screen
, vol.4
, pp. 67-73
-
-
Zhang, J.H.1
Chung, T.D.2
Oldenburg, K.R.3
-
32
-
-
77951850381
-
BISMA--fast and accurate bisulfite sequencing data analysis of individual clones from unique and repetitive sequences
-
Rohde, C., Zhang, Y., Reinhardt, R., and Jeltsch, A. (2010) BISMA--fast and accurate bisulfite sequencing data analysis of individual clones from unique and repetitive sequences, BMC Bioinformatics 11, 230.
-
(2010)
BMC Bioinformatics
, vol.11
-
-
Rohde, C.1
Zhang, Y.2
Reinhardt, R.3
Jeltsch, A.4
-
33
-
-
41149172342
-
Bisulfite sequencing Data Presentation and Compilation (BDPC) web server--a useful tool for DNA methylation analysis
-
Rohde, C., Zhang, Y., Jurkowski, T. P., Stamerjohanns, H., Reinhardt, R., and Jeltsch, A. (2008) Bisulfite sequencing Data Presentation and Compilation (BDPC) web server--a useful tool for DNA methylation analysis, Nucleic Acids Res 36, e34.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. e34
-
-
Rohde, C.1
Zhang, Y.2
Jurkowski, T.P.3
Stamerjohanns, H.4
Reinhardt, R.5
Jeltsch, A.6
-
34
-
-
77953173084
-
New clustering module in BDPC bisulfite sequencing data presentation and compilation web application for DNA methylation analyses
-
Rohde, C., Zhang, Y., Stamerjohanns, H., Hecher, K., Reinhardt, R., and Jeltsch, A. (2009) New clustering module in BDPC bisulfite sequencing data presentation and compilation web application for DNA methylation analyses, Biotechniques 47, 781–783.
-
(2009)
Biotechniques
, vol.47
, pp. 781-783
-
-
Rohde, C.1
Zhang, Y.2
Stamerjohanns, H.3
Hecher, K.4
Reinhardt, R.5
Jeltsch, A.6
-
35
-
-
19744383664
-
BiSearch: Primer-design and search tool for PCR on bisulfite-treated genomes
-
Tusnady, G. E., Simon, I., Varadi, A., and Aranyi, T. (2005) BiSearch: primer-design and search tool for PCR on bisulfite-treated genomes, Nucleic Acids Res 33, e9.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. e9
-
-
Tusnady, G.E.1
Simon, I.2
Varadi, A.3
Aranyi, T.4
-
36
-
-
0036856355
-
MethPrimer: Designing primers for methylation PCRs
-
Li, L. C., and Dahiya, R. (2002) MethPrimer: designing primers for methylation PCRs, Bioinformatics 18, 1427–1431.
-
(2002)
Bioinformatics
, vol.18
, pp. 1427-1431
-
-
Li, L.C.1
Dahiya, R.2
-
37
-
-
1242296842
-
A comprehensive analysis of allelic methylation status of CpG islands on human chromosome 21q
-
Yamada, Y., Watanabe, H., Miura, F., Soejima, H., Uchiyama, M., Iwasaka, T., Mukai, T., Sakaki, Y., and Ito, T. (2004) A comprehensive analysis of allelic methylation status of CpG islands on human chromosome 21q, Genome Res 14, 247–266.
-
(2004)
Genome Res
, vol.14
, pp. 247-266
-
-
Yamada, Y.1
Watanabe, H.2
Miura, F.3
Soejima, H.4
Uchiyama, M.5
Iwasaka, T.6
Mukai, T.7
Sakaki, Y.8
Ito, T.9
-
38
-
-
34548603504
-
Structure of Dnmt3a bound to Dnmt3L suggests a model for de novo DNA methylation
-
Jia, D., Jurkowska, R. Z., Zhang, X., Jeltsch, A., and Cheng, X. (2007) Structure of Dnmt3a bound to Dnmt3L suggests a model for de novo DNA methylation, Nature 449, 248–251.
-
(2007)
Nature
, vol.449
, pp. 248-251
-
-
Jia, D.1
Jurkowska, R.Z.2
Zhang, X.3
Jeltsch, A.4
Cheng, X.5
-
39
-
-
0028373557
-
A procedure for renaturation and purification of the extracellular Serratia marcescens nuclease from genetically engineered Escherichia coli
-
Friedhoff, P., Gimadutdinow, O., Ruter, T., Wende, W., Urbanke, C., Thole, H., and Pingoud, A. (1994) A procedure for renaturation and purification of the extracellular Serratia marcescens nuclease from genetically engineered Escherichia coli, Protein Expr Purif 5, 37–43.
-
(1994)
Protein Expr Purif
, vol.5
, pp. 37-43
-
-
Friedhoff, P.1
Gimadutdinow, O.2
Ruter, T.3
Wende, W.4
Urbanke, C.5
Thole, H.6
Pingoud, A.7
-
40
-
-
77954126183
-
Chromatin methylation activity of Dnmt3a and Dnmt3a/3L is guided by interaction of the ADD domain with the histone H3 tail
-
Zhang, Y., Jurkowska, R., Soeroes, S., Rajavelu, A., Dhayalan, A., Bock, I., Rathert, P., Brandt, O., Reinhardt, R., Fischle, W., and Jeltsch, A. (2010) Chromatin methylation activity of Dnmt3a and Dnmt3a/3L is guided by interaction of the ADD domain with the histone H3 tail, Nucleic Acids Res.
-
(2010)
Nucleic Acids Res
-
-
Zhang, Y.1
Jurkowska, R.2
Soeroes, S.3
Rajavelu, A.4
Dhayalan, A.5
Bock, I.6
Rathert, P.7
Brandt, O.8
Reinhardt, R.9
Fischle, W.10
Jeltsch, A.11
-
41
-
-
4444255882
-
Anomalous mobility of polymerase chain reaction products after bisulfite treatment of DNA
-
Handa, V., and Jeltsch, A. (2004) Anomalous mobility of polymerase chain reaction products after bisulfite treatment of DNA, Anal Biochem 333, 196–198.
-
(2004)
Anal Biochem
, vol.333
, pp. 196-198
-
-
Handa, V.1
Jeltsch, A.2
|