-
1
-
-
3042848952
-
Evidence for dynamically organized modularity in the yeast protein-protein interaction network
-
Han, J. D., Bertin, N., Hao, T., et al. (2004) Evidence for dynamically organized modularity in the yeast protein-protein interaction network. Nature 430, 88–93.
-
(2004)
Nature
, vol.430
, pp. 88-93
-
-
Han, J.D.1
Bertin, N.2
Hao, T.3
-
2
-
-
0346725935
-
Protein interaction maps on the fly
-
Uetz, P., and Pankratz, M. J. (2004) Protein interaction maps on the fly. Nat. Biotechnol. 22, 43–44.
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 43-44
-
-
Uetz, P.1
Pankratz, M.J.2
-
3
-
-
20744440332
-
Inferring genetic regulatory logic from expression data
-
Bulashevska, S., and Eils, R. (2005) Inferring genetic regulatory logic from expression data. Bioinformatics 21, 2706–2713.
-
(2005)
Bioinformatics
, vol.21
, pp. 2706-2713
-
-
Bulashevska, S.1
Eils, R.2
-
4
-
-
33845417184
-
Application of Petri net based analysis techniques to signal transduction pathways
-
Sackmann, A., Heiner, M., and Koch, I. (2006) Application of Petri net based analysis techniques to signal transduction pathways. BMC Bioinformatics 7, 482.
-
(2006)
BMC Bioinformatics
, vol.7
-
-
Sackmann, A.1
Heiner, M.2
Koch, I.3
-
5
-
-
34147189103
-
Systems biology standards – the community speaks
-
Klipp, E., Liebermeister, W., Helbig, A., Kowald, A., and Schaber, J. (2007) Systems biology standards – the community speaks. Nat. Biotechnol. 25, 390–391.
-
(2007)
Nat. Biotechnol.
, vol.25
, pp. 390-391
-
-
Klipp, E.1
Liebermeister, W.2
Helbig, A.3
Kowald, A.4
Schaber, J.5
-
6
-
-
0027223982
-
Stoichiometric interpretation of Escherichia coli glucose catabolism under various oxygenation rates
-
Varma, A., Boesch, B. W., and Palsson, B. O. (1993) Stoichiometric interpretation of Escherichia coli glucose catabolism under various oxygenation rates. Appl. Environ. Microbiol. 59, 2465–2473.
-
(1993)
Appl. Environ. Microbiol.
, vol.59
, pp. 2465-2473
-
-
Varma, A.1
Boesch, B.W.2
Palsson, B.O.3
-
7
-
-
33645429016
-
Exact Stochastic Simulation of coupled chemical-reactions
-
Gillespie, D. T. (1977) Exact Stochastic Simulation of coupled chemical-reactions. J. Phys. Chem. 81, 2340–2361.
-
(1977)
J. Phys. Chem.
, vol.81
, pp. 2340-2361
-
-
Gillespie, D.T.1
-
8
-
-
3343020085
-
Integrative analysis of cell cycle control in budding yeast
-
Chen, K. C., Calzone, L., Csikasz-Nagy, A., Cross, F. R., Novak, B., and Tyson, J. J. (2004) Integrative analysis of cell cycle control in budding yeast. Mol. Biol. Cell 15, 3841–3862.
-
(2004)
Mol. Biol. Cell
, vol.15
, pp. 3841-3862
-
-
Chen, K.C.1
Calzone, L.2
Csikasz-Nagy, A.3
Cross, F.R.4
Novak, B.5
Tyson, J.J.6
-
9
-
-
0033985570
-
Kinetic analysis of a molecular model of the budding yeast cell cycle
-
Chen, K. C., Csikasz-Nagy, A., Gyorffy, B., Val, J., Novak, B., and Tyson, J. J. (2000) Kinetic analysis of a molecular model of the budding yeast cell cycle. Mol. Biol. Cell 11, 369–391.
-
(2000)
Mol. Biol. Cell
, vol.11
, pp. 369-391
-
-
Chen, K.C.1
Csikasz-Nagy, A.2
Gyorffy, B.3
Val, J.4
Novak, B.5
Tyson, J.J.6
-
10
-
-
0033591846
-
Finishing the cell cycle
-
Novak, B., Toth, A., Csikasz-Nagy, A., Gyorffy, B., Tyson, J. J., and Nasmyth, K. (1999) Finishing the cell cycle. J. Theor. Biol. 199, 223–233.
-
(1999)
J. Theor. Biol.
, vol.199
, pp. 223-233
-
-
Novak, B.1
Toth, A.2
Csikasz-Nagy, A.3
Gyorffy, B.4
Tyson, J.J.5
Nasmyth, K.6
-
11
-
-
0036655823
-
Biochemical signaling networks decode temporal patterns of synaptic input
-
Bhalla, U. S. (2002) Biochemical signaling networks decode temporal patterns of synaptic input. J. Comput. Neurosci. 13, 49–62.
-
(2002)
J. Comput. Neurosci.
, vol.13
, pp. 49-62
-
-
Bhalla, U.S.1
-
12
-
-
3142557989
-
Models of cell signaling pathways
-
Bhalla, U. S. (2004) Models of cell signaling pathways. Curr. Opin. Genet. Dev. 14, 375–381.
-
(2004)
Curr. Opin. Genet. Dev.
, vol.14
, pp. 375-381
-
-
Bhalla, U.S.1
-
13
-
-
0033555859
-
Emergent properties of networks of biological signaling pathways
-
Bhalla, U. S., and Iyengar, R. (1999) Emergent properties of networks of biological signaling pathways. Science 283, 381–387.
-
(1999)
Science
, vol.283
, pp. 381-387
-
-
Bhalla, U.S.1
Iyengar, R.2
-
14
-
-
0009952303
-
Robustness of the bistable behavior of a biological signaling feedback loop
-
Bhalla, U. S., and Iyengar, R. (2001) Robustness of the bistable behavior of a biological signaling feedback loop. Chaos 11, 221–226.
-
(2001)
Chaos
, vol.11
, pp. 221-226
-
-
Bhalla, U.S.1
Iyengar, R.2
-
16
-
-
33845368513
-
COPASI – a COmplex PAthway SImulator
-
Hoops, S., Sahle, S., Gauges, R., et al. (2006) COPASI – a COmplex PAthway SImulator. Bioinformatics 22, 3067–3074.
-
(2006)
Bioinformatics
, vol.22
, pp. 3067-3074
-
-
Hoops, S.1
Sahle, S.2
Gauges, R.3
-
17
-
-
0015989446
-
A linear steady-state treatment of enzymatic chains. General properties, control and effector strength
-
Heinrich, R., and Rapoport, T. A. (1974) A linear steady-state treatment of enzymatic chains. General properties, control and effector strength. Eur. J. Biochem. 42, 89–95.
-
(1974)
Eur. J. Biochem.
, vol.42
, pp. 89-95
-
-
Heinrich, R.1
Rapoport, T.A.2
-
19
-
-
0023709196
-
Metabolic control theory: A structural approach
-
Reder, C. (1988) Metabolic control theory: a structural approach. J. Theor. Biol. 135, 175–201.
-
(1988)
J. Theor. Biol.
, vol.135
, pp. 175-201
-
-
Reder, C.1
-
21
-
-
71149108764
-
-
Weinheim: Wiley-VCH
-
Klipp, E., Liebermeister, W., Wierling, C., Kowald, A., Lehrach, H., and Herwig, R. (2009) Systems Biology. A Textbook. Weinheim: Wiley-VCH.
-
(2009)
Systems Biology. a Textbook
-
-
Klipp, E.1
Liebermeister, W.2
Wierling, C.3
Kowald, A.4
Lehrach, H.5
Herwig, R.6
-
22
-
-
0037466509
-
Sensitivity analysis of stoichiometric networks: An extension of metabolic control analysis to non-steady state trajectories
-
Ingalls, B. P, and Sauro, H. M. (2003) Sensitivity analysis of stoichiometric networks: an extension of metabolic control analysis to non-steady state trajectories. J. Theor. Biol. 222, 23–36.
-
(2003)
J. Theor. Biol.
, vol.222
, pp. 23-36
-
-
Ingalls, B.P.1
Sauro, H.M.2
-
23
-
-
0026006671
-
A minimal cascade model for the mitotic oscillator involving cyclin and cdc2 kinase
-
Goldbeter, A. (1991) A minimal cascade model for the mitotic oscillator involving cyclin and cdc2 kinase. Proc. Natl. Acad. Sci. USA 88, 9107–9111.
-
(1991)
Proc. Natl. Acad. Sci. USA
, vol.88
, pp. 9107-9111
-
-
Goldbeter, A.1
-
24
-
-
23444449142
-
Integrative model of the response of yeast to osmotic shock
-
Klipp, E., Nordlander, B., Krüger, R., Gen-nemark, P., and Hohmann, S. (2005). Integrative model of the response of yeast to osmotic shock. Nat. Biotechnol. 23, 975–982.
-
(2005)
Nat. Biotechnol.
, vol.23
, pp. 975-982
-
-
Klipp, E.1
Nordlander, B.2
Krüger, R.3
Gen-Nemark, P.4
Hohmann, S.5
-
25
-
-
38549084632
-
The frequency dependence of osmo-adaptation in Saccharomyces cerevisiae
-
Mettetal, J. T, Muzzey, D., Gomez-Uribe, C., and van Oudenaarden, A. (2008) The frequency dependence of osmo-adaptation in Saccharomyces cerevisiae. Science 319, 482–484.
-
(2008)
Science
, vol.319
, pp. 482-484
-
-
Mettetal, J.T.1
Muzzey, D.2
Gomez-Uribe, C.3
van Oudenaarden, A.4
-
26
-
-
34047259513
-
A systems-biology analysis of feedback inhibition in the Sho1 osmotic-stress-response pathway
-
Hao, N., Behar, M., Parnell, S. C., et al. (2007) A systems-biology analysis of feedback inhibition in the Sho1 osmotic-stress-response pathway. Curr. Biol. 17, 659–667.
-
(2007)
Curr. Biol.
, vol.17
, pp. 659-667
-
-
Hao, N.1
Behar, M.2
Parnell, S.C.3
-
27
-
-
0037342537
-
The systems biology markup language (SBML): A medium for representation and exchange of biochemical network models
-
Hucka, M., Finney, A., Sauro, H. M., et al. (2003) The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinformatics 19, 524–531.
-
(2003)
Bioinformatics
, vol.19
, pp. 524-531
-
-
Hucka, M.1
Finney, A.2
Sauro, H.M.3
-
28
-
-
28644433993
-
Minimum information requested in the annotation of biochemical models (MIRIAM)
-
Le Novere, N., Finney, A., Hucka, M., et al. (2005) Minimum information requested in the annotation of biochemical models (MIRIAM). Nat. Biotechnol. 23, 1509–1515.
-
(2005)
Nat. Biotechnol.
, vol.23
, pp. 1509-1515
-
-
Le Novere, N.1
Finney, A.2
Hucka, M.3
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